BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6218
         (533 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
 pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
           Complex With Udp And Manganese
          Length = 280

 Score = 34.7 bits (78), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 334 GLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAAR--PDLPLVKLRGV 391
           G +F+ V T  ++  +R   + DTW   I  +   FT         R  P L +V     
Sbjct: 13  GDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHL-VVTQCSA 71

Query: 392 DDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQ 450
           + S+P    S  M             WF   DDD YV  + L ++L++    +  ++G+
Sbjct: 72  EHSHP--ALSCKMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGK 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,563,553
Number of Sequences: 62578
Number of extensions: 709808
Number of successful extensions: 1175
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 33
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)