Query psy6218
Match_columns 533
No_of_seqs 260 out of 1284
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 20:44:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 56.3 10 0.00073 33.1 6.7 107 405-513 80-199 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 43.6 8.2 0.0006 32.0 3.7 29 415-443 81-109 (265)
3 d1s4na_ c.68.1.16 (A:) Glycoli 12.0 70 0.0051 30.4 3.7 27 414-440 135-164 (339)
4 d1gh9a_ g.41.6.1 (A:) Hypothet 11.5 19 0.0014 26.5 -0.6 16 189-204 10-25 (71)
5 d1ozza_ g.3.7.4 (A:) Defensin 9.9 28 0.0021 23.0 -0.0 15 68-82 1-15 (44)
6 d1rutx3 g.39.1.3 (X:83-113) LI 7.5 88 0.0064 19.7 1.6 14 414-427 13-26 (31)
7 d1xhba2 c.68.1.17 (A:95-422) P 5.9 76 0.0055 28.3 0.9 48 469-521 195-242 (328)
8 d1u5sb2 g.39.1.3 (B:103-137) P 4.7 1E+02 0.0076 19.6 0.7 17 183-199 6-22 (35)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 4.6 2.1E+02 0.015 25.8 3.1 24 467-491 53-76 (252)
10 d2fuka1 c.69.1.36 (A:3-220) XC 4.5 2.8E+02 0.021 23.5 3.8 30 419-448 158-187 (218)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=56.34 E-value=10 Score=33.09 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcC--CCCCCeEEEeec-CC---Ccc---cccccc--CCCCCCCccC
Q psy6218 405 LQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSV--DSSKPQFIGQAG-RG---NQE---EFGLLS--LEYDENFCMG 473 (533)
Q Consensus 405 L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~--dpseplYiG~~~-~~---~~~---ey~~~~--~~~~~~Y~sG 473 (533)
+....+.. +.+|++..|+|.++..+.|...++.+ +|+..++.|... .. ... ...... .........+
T Consensus 80 ~N~gi~~a--~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T d1qg8a_ 80 INQAIEMA--EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAID 157 (255)
T ss_dssp HHHHHHHC--CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCSCBSCCTTTSC
T ss_pred cccccccc--ccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeecccchhhhhhhccccc
Confidence 44444543 68999999999999877666655533 455555554421 11 000 000000 0112223335
Q ss_pred CCceeeCHHHHHHHHHhHHHhhcc--CCCCchhHHHHHHHHh
Q psy6218 474 GPGVIMSRATLALVAPHIKYCLKN--LYTTHEDVELGRCVQK 513 (533)
Q Consensus 474 GAGYVLSr~aLrkL~~~~~~C~~~--~~~~~EDV~LG~CL~~ 513 (533)
++++++++++++++.......... .+...+|..+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~ 199 (255)
T d1qg8a_ 158 HCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH 199 (255)
T ss_dssp GGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHHc
Confidence 578999999999987643222111 1244678777655543
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.60 E-value=8.2 Score=32.05 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCceEEEEcCCccccHHHHHHHHhcCCCC
Q psy6218 415 KYEWFMRADDDLYVRGERLARMLRSVDSS 443 (533)
Q Consensus 415 ~~dWFlKvDDDTYVnvdNL~~~L~~~dps 443 (533)
+.+|++..|||+.+..+.|..+++.+...
T Consensus 81 ~ge~i~~lD~D~~~~~~~l~~l~~~~~~~ 109 (265)
T d1omza_ 81 ETNAVLMVDDDTLISAQDLVFAFSIWQQF 109 (265)
T ss_dssp CSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred CcCEEEEeCcccCCCHHHHHHHHHHHHhC
Confidence 67999999999999999999988876543
No 3
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.99 E-value=70 Score=30.40 Aligned_cols=27 Identities=15% Similarity=0.537 Sum_probs=20.5
Q ss_pred CCCceEEEEcCCccccH---HHHHHHHhcC
Q psy6218 414 DKYEWFMRADDDLYVRG---ERLARMLRSV 440 (533)
Q Consensus 414 ~~~dWFlKvDDDTYVnv---dNL~~~L~~~ 440 (533)
.++||++++|||+++.= ..+-++++..
T Consensus 135 ~~YdYywRvdpD~~f~cdI~yD~F~~M~~n 164 (339)
T d1s4na_ 135 EEYDWYWRVEPDIKLYCDINYDVFKWMQEN 164 (339)
T ss_dssp TTCSEEEECCTTCEECSCCCSCHHHHHHHT
T ss_pred hccceEEEeCCCcEEecCCCCCHHHHHhhc
Confidence 58999999999998842 3555677653
No 4
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.49 E-value=19 Score=26.47 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.2
Q ss_pred ccCccccccccchhhH
Q psy6218 189 MRGPYSREGRRLSTGL 204 (533)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (533)
||+||++||..-++-+
T Consensus 10 GRvLYskEg~kTrKCv 25 (71)
T d1gh9a_ 10 GRALYSREGAKTRKCV 25 (71)
T ss_dssp SCCEEEETTCSEEEET
T ss_pred cceeeeccccceeeee
Confidence 7899999998777655
No 5
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]}
Probab=9.94 E-value=28 Score=23.02 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=11.5
Q ss_pred ccccchhhhhhcCCc
Q psy6218 68 DVELGRCVQKFAGIP 82 (533)
Q Consensus 68 D~~lGRCi~~~~~~~ 82 (533)
|.-||||||-+++-.
T Consensus 1 d~lig~cvwga~nyt 15 (44)
T d1ozza_ 1 DKLIGSCVWGAVNYT 15 (44)
T ss_dssp CEEEEESSTTSSSBC
T ss_pred Cceeeeeeecccccc
Confidence 556899999888643
No 6
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.47 E-value=88 Score=19.66 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=12.0
Q ss_pred CCCceEEEEcCCcc
Q psy6218 414 DKYEWFMRADDDLY 427 (533)
Q Consensus 414 ~~~dWFlKvDDDTY 427 (533)
+..+|+|++-|.+|
T Consensus 13 ~~~e~VmRA~~~Vy 26 (31)
T d1rutx3 13 PASELVMRAQGNVY 26 (31)
T ss_dssp CTTSEEEEETTEEE
T ss_pred ChhHhheeccccee
Confidence 36799999999888
No 7
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.87 E-value=76 Score=28.25 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=30.0
Q ss_pred CCccCCCceeeCHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceee
Q psy6218 469 NFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTW 521 (533)
Q Consensus 469 ~Y~sGGAGYVLSr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~ 521 (533)
+++. |+.+++++++++++--. +.. ......||.-++.-+.+ .|-....
T Consensus 195 ~~~~-g~~~~irr~~f~~vGgf-De~--~~~~g~ED~Dl~~R~~~-~G~~i~~ 242 (328)
T d1xhba2 195 PTMA-GGLFSIDRDYFQEIGTY-DAG--MDIWGGENLEISFRIWQ-CGGTLEI 242 (328)
T ss_dssp SBCC-SSSEEEEHHHHHHTTSC-CTT--SCTTCCCCSHHHHHHHH-TTCEEEE
T ss_pred ceec-ceeeeeeHHHHHHhCCC-CCC--CcCcCchHHHHHHHHHH-hCCeEEE
Confidence 3444 47788999999987521 111 01124699999877776 5765443
No 8
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=1e+02 Score=19.61 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.0
Q ss_pred CCCCccccCcccccccc
Q psy6218 183 RPTPFQMRGPYSREGRR 199 (533)
Q Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (533)
-|.||.||--|.+.|..
T Consensus 6 CekPF~G~rhyE~~g~a 22 (35)
T d1u5sb2 6 CEKPFLGHRHYERKGLA 22 (35)
T ss_dssp TCCBCSSSCCEEETTEE
T ss_pred cCCccCCchhhhhcCch
Confidence 37799999999988764
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=4.64 E-value=2.1e+02 Score=25.80 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.1
Q ss_pred CCCCccCCCceeeCHHHHHHHHHhH
Q psy6218 467 DENFCMGGPGVIMSRATLALVAPHI 491 (533)
Q Consensus 467 ~~~Y~sGGAGYVLSr~aLrkL~~~~ 491 (533)
+.||- ||+|.||..+-+.+-++..
T Consensus 53 D~PyG-GGpGMVmk~ePl~~ai~~~ 76 (252)
T d1uala_ 53 DRPYG-GGPGMLMMVQPLRDAIHTA 76 (252)
T ss_dssp ECCTT-CCSCCEECHHHHHHHHHHH
T ss_pred CCcCC-CCCcceeechhHHHHHHHH
Confidence 46775 8899999998777666543
No 10
>d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]}
Probab=4.46 E-value=2.8e+02 Score=23.49 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred EEEEcCCccccHHHHHHHHhcCCCCCCeEE
Q psy6218 419 FMRADDDLYVRGERLARMLRSVDSSKPQFI 448 (533)
Q Consensus 419 FlKvDDDTYVnvdNL~~~L~~~dpseplYi 448 (533)
++..+.|++|.++.+.++.+.+.....+.+
T Consensus 158 vi~G~~D~~vp~~~~~~l~~~~~~~~~l~~ 187 (218)
T d2fuka1 158 VIQGDADEIVDPQAVYDWLETLEQQPTLVR 187 (218)
T ss_dssp EEEETTCSSSCHHHHHHHHTTCSSCCEEEE
T ss_pred eEecCCCcCcCHHHHHHHHHHccCCceEEE
Done!