RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6218
(533 letters)
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 147 bits (372), Expect = 8e-41
Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 10/196 (5%)
Query: 336 LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSY 395
+F+ V T ++ +R + DTW I + FT R P + + +
Sbjct: 15 IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERL-GPHLVVTQCSAEH 73
Query: 396 PPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGN 455
S M WF DDD YV + L ++L++ + ++G+
Sbjct: 74 SHPALSCKMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNR 133
Query: 456 QEE-----FGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYC----LKNLYTTHEDVE 506
+ F GG G ++R + P L +D
Sbjct: 134 PIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCT 193
Query: 507 LGRCVQKFAGIPCTWS 522
+G ++ G S
Sbjct: 194 VGYIIECKLGGRLQPS 209
Score = 52.8 bits (126), Expect = 8e-08
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 9 KSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYC----LKNLYT 64
K ++ + + F GG G ++R + P L
Sbjct: 128 KPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIR 187
Query: 65 THEDVELGRCVQKFAGIP 82
+D +G ++ G
Sbjct: 188 LPDDCTVGYIIECKLGGR 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 9e-04
Identities = 71/434 (16%), Positives = 115/434 (26%), Gaps = 204/434 (47%)
Query: 15 GGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRC 74
GG+GN +++ ++E L++LY T+ + +G
Sbjct: 161 GGQGNTDDY------FEE--------------------------LRDLYQTYHVL-VGDL 187
Query: 75 VQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPRPST-YKAS-EVSL 132
++ A LS R +++ + Q + + + P Y S +S
Sbjct: 188 IKFSAET--LSELIRTTL-----DAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 133 ------------STKFKLGLWSPAIELF------FLCPQD------FAWASTWAS----- 163
T LG ++P EL Q A +W S
Sbjct: 239 PLIGVIQLAHYVVTAKLLG-FTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 164 ------------SCGRNFSVSPLSISQRQ-------GPRPTPFQM---RGP--------- 192
C + + L S + G P+P M
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSP--MLSISNLTQEQVQDYV 353
Query: 193 -----YSREGRRLS------------TGLCMGLY-LGVLLR------------------- 215
+ G+++ +G LY L + LR
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 216 PK----FLSLAALHFSTP--RPAAD--------------------PVSDAEAILPRGEET 249
K FL +A+ F + PA+D PV D G +
Sbjct: 414 LKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD----GSDL 468
Query: 250 QGQTDG---------------WSSSAGEKGRGISDVG-LSESGLLFVGVMTANSYLNTRA 293
+ + W ++ K I D G SGL GV+T N
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL---GVLTHR---NKDG 522
Query: 294 TSVYDTWARDIPAT 307
T R I A
Sbjct: 523 -----TGVRVIVAG 531
Score = 29.6 bits (66), Expect = 3.2
Identities = 51/319 (15%), Positives = 84/319 (26%), Gaps = 109/319 (34%)
Query: 214 LRPKFLSLAALHFSTPRP-----AADPVSDA-EAILPRGEETQGQTDGWSSSAGEKGR-- 265
RP LS +L P A + + ILP E D ++ A G+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 266 G-ISDVGLSESGLLFVGVMTA------NSYLNTRATSVYDTWARDIPATQGQTDGWSSSG 318
G +S + F V+ N YL DI A + + +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN----------DIHALAAKLLQENDTT 115
Query: 319 GEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPA 378
K + + +Y+ R + R + S S+ A
Sbjct: 116 LVKTKEL-----------------IKNYITARIMA-----KRPFDKK-----SNSALFRA 148
Query: 379 AR---------------PDLPLVKLRGVDDSYPPQKKSFL-----MLQ----------YM 408
D +LR + +Y + L +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 409 WERYGDKYEWFMRAD---DDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLE 465
+ + + EW D Y L S+ S P I G++ L
Sbjct: 209 FTQGLNILEWLENPSNTPDKDY---------LLSIPISCP-LI-----------GVIQLA 247
Query: 466 YDENFC--MG-GPGVIMSR 481
+ +G PG + S
Sbjct: 248 HYVVTAKLLGFTPGELRSY 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.007
Identities = 42/278 (15%), Positives = 71/278 (25%), Gaps = 86/278 (30%)
Query: 3 FNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFC---MGGPGVIMSRATLALVAPHIKYCL 59
+NV R + + + LL L +N + G G + +AL
Sbjct: 129 YNVSRLQPY-------LKLRQALLELRPAKNVLIDGVLGSG----KTWVALDV------C 171
Query: 60 KNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSN 119
+ V+ C F I +L+ +N ++ Q L Q R SN
Sbjct: 172 LS-----YKVQ---CKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 120 PRPST----YKASEVSLSTKFKLGL------WSP-AIELFFLCPQDFAWASTWASSC--- 165
+ + + S ++ L + A F + SC
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NL--------SCKIL 269
Query: 166 --GRNFSVSPLSISQRQGPRPTPFQMRGPYSREGRRLSTGLCMGLYLGVLLRPKFLSLAA 223
R V+ + E + L + YL + L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDC----RPQDL-- 318
Query: 224 LHFSTPRPAADPVSDAEAILPR-----GEETQGQTDGW 256
PR + PR E + W
Sbjct: 319 -----PR-------EVLTTNPRRLSIIAESIRDGLATW 344
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 31.9 bits (72), Expect = 0.56
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 428 VRGERLARMLR-SVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLAL 486
V+ E + R +VD + + G+ L+ + +GG +
Sbjct: 108 VKTEYIKRKAFMTVDGQESPSVTVVGKATT-------LDVERKLYLGGLPSHYRARNIGT 160
Query: 487 VAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYE 524
+ I C+ + + ++ R + A C +
Sbjct: 161 ITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQ 198
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 30.5 bits (68), Expect = 1.6
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 10/109 (9%)
Query: 339 GVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQ 398
+ S A+ + T V + + + KL + ++P
Sbjct: 366 KAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFL 425
Query: 399 KKS---FLMLQYMWERYG-------DKYEWFMRADDDLYVRGERLARML 437
S + + + D Y+ + +L A +
Sbjct: 426 AYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVA 474
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,965,203
Number of extensions: 471009
Number of successful extensions: 812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 9
Length of query: 533
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 435
Effective length of database: 3,965,535
Effective search space: 1725007725
Effective search space used: 1725007725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)