RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6218
         (533 letters)



>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A
           virus, different strains [TaxId: 11320]}
          Length = 387

 Score = 28.3 bits (63), Expect = 2.2
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 255 GWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQ 308
            WSSS+   G+    V ++          TA+   + R      +W++ I  TQ
Sbjct: 95  AWSSSSCHDGKAWLHVCVTGHD----ENATASFIYDGRLVDSIGSWSKKILRTQ 144


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 28.3 bits (62), Expect = 2.4
 Identities = 11/113 (9%), Positives = 28/113 (24%), Gaps = 10/113 (8%)

Query: 335 LLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDS 394
           +     +   S     A+ +  T        V    +       +     + KL   + +
Sbjct: 168 INLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAA 227

Query: 395 YPPQKK---SFLMLQYMWERY-------GDKYEWFMRADDDLYVRGERLARML 437
           +P         +   +  +          D Y+  +    +L       A + 
Sbjct: 228 FPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVA 280


>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
           different strains [TaxId: 11320]}
          Length = 388

 Score = 27.5 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 255 GWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQ 308
           GWSS++   G+    + +S          +A  + N R  +  +TWAR+I  TQ
Sbjct: 97  GWSSTSCHDGKTRMSICISGPN----NNASAVIWYNRRPVTEINTWARNILRTQ 146


>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
           different strains [TaxId: 11520]}
          Length = 390

 Score = 27.5 bits (61), Expect = 4.3
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 255 GWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQ 308
            WS SA   GR  + +G+                     T  Y ++A +I  TQ
Sbjct: 100 AWSGSACHDGREWTYIGVDGPD----SNALIKIKYGEAYTDTYHSYANNILRTQ 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,930,531
Number of extensions: 87295
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 4
Length of query: 533
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,171,896
Effective search space: 519149928
Effective search space used: 519149928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)