BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6220
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E3M|A Chain A, Crystal Structure Of Cert Start Domain
 pdb|2E3N|A Chain A, Crystal Structure Of Cert Start Domain In Complex With C6-
           Ceramide (P212121)
 pdb|2E3O|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
           C16- Ceramide (P212121)
 pdb|2E3P|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
           C16- Cearmide (P1)
 pdb|2E3P|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
           C16- Cearmide (P1)
 pdb|2E3Q|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
           C18- Ceramide (p212121)
 pdb|2E3R|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
           C18- Ceramide (P1)
 pdb|2E3R|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
           C18- Ceramide (P1)
 pdb|2E3S|A Chain A, Crystal Structure Of Cert Start Domain Co-Crystallized
           With C24-Ceramide (P21)
 pdb|2Z9Y|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
           C10- Diacylglycerol
 pdb|3H3Q|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-13
 pdb|3H3Q|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-13
 pdb|3H3R|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-14
 pdb|3H3R|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-14
 pdb|3H3S|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-15
 pdb|3H3S|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-15
 pdb|3H3T|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-16
 pdb|3H3T|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
           Hpa-16
          Length = 255

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 21  TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
           T+E   V ET++++ I+ +Q HK +WP +QRD ++ S + ++P  ++ D +  WIV N S
Sbjct: 105 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPET-WIVCNFS 163

Query: 81  TDLDAYPVSRRRVTQTV 97
            D D+ P++ R V   +
Sbjct: 164 VDHDSAPLNNRCVRAKI 180


>pdb|2Z9Z|A Chain A, Crystal Structure Of Cert Start Domain(N504a Mutant), In
           Complex With C10-Diacylglycerol
          Length = 255

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 21  TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
           T+E   V ET++++ I+ +Q HK +WP +QRD ++ S + ++P  ++ D +  WIV   S
Sbjct: 105 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPET-WIVCAFS 163

Query: 81  TDLDAYPVSRRRVTQTV 97
            D D+ P++ R V   +
Sbjct: 164 VDHDSAPLNNRCVRAKI 180


>pdb|3A0F|A Chain A, The Crystal Structure Of Geotrichum Sp. M128 Xyloglucanase
          Length = 763

 Score = 25.4 bits (54), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 34  DTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPS 66
           D + F    + +W  T R A  WS M Q+PD S
Sbjct: 146 DELWFGSRTQGLWRSTDR-AQTWSRMNQLPDSS 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.128    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,704,468
Number of Sequences: 62578
Number of extensions: 87072
Number of successful extensions: 211
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 5
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)