BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6220
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6VVX2|C43BP_CRIGR Collagen type IV alpha-3-binding protein OS=Cricetulus griseus
GN=COL4A3BP PE=1 SV=1
Length = 598
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D + WIV N S
Sbjct: 448 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSAIRKIPALTENDPE-TWIVCNFS 506
Query: 81 TDLDAYPVSRRRVTQTV 97
D D+ P++ R V +
Sbjct: 507 VDHDSAPLNNRCVRAKI 523
>sp|Q9EQG9|C43BP_MOUSE Collagen type IV alpha-3-binding protein OS=Mus musculus
GN=Col4a3bp PE=1 SV=1
Length = 624
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D + WIV N S
Sbjct: 474 TIENFHVVETLADNAIIVYQTHKRVWPASQRDVLYLSAIRKIPALTENDPE-TWIVCNFS 532
Query: 81 TDLDAYPVSRRRVTQTV 97
D D+ P++ R V +
Sbjct: 533 VDHDSAPLNNRCVRAKI 549
>sp|Q9Y5P4|C43BP_HUMAN Collagen type IV alpha-3-binding protein OS=Homo sapiens
GN=COL4A3BP PE=1 SV=1
Length = 624
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D + WIV N S
Sbjct: 474 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPE-TWIVCNFS 532
Query: 81 TDLDAYPVSRRRVTQTV 97
D D+ P++ R V +
Sbjct: 533 VDHDSAPLNNRCVRAKI 549
>sp|Q5R6M6|C43BP_PONAB Collagen type IV alpha-3-binding protein OS=Pongo abelii
GN=COL4A3BP PE=2 SV=1
Length = 624
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D + WIV N S
Sbjct: 474 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPE-TWIVCNFS 532
Query: 81 TDLDAYPVSRRRVTQTV 97
D D+ P++ R V +
Sbjct: 533 VDHDSAPLNNRCVRAKI 549
>sp|Q9GKI7|C43BP_BOVIN Collagen type IV alpha-3-binding protein OS=Bos taurus GN=COL4A3BP
PE=2 SV=1
Length = 624
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D + WIV N S
Sbjct: 474 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSAIRKIPALNENDPE-TWIVCNFS 532
Query: 81 TDLDAYPVSRRRVTQTV 97
D + P++ R V +
Sbjct: 533 VDHSSAPLNNRCVRAKI 549
>sp|Q6P3Q6|C43BP_XENTR Collagen type IV alpha-3-binding protein OS=Xenopus tropicalis
GN=col4a3bp PE=2 SV=1
Length = 617
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V E +S + I+ +Q HK +WP +QRD ++ S + VP S+ + + WIV N S
Sbjct: 468 TIENFHVVEKLSPNAIIVYQTHKRVWPASQRDVLYLSAIRMVPAASENE-MDTWIVCNFS 526
Query: 81 TDLDAYPVSR 90
D D P++R
Sbjct: 527 VDHDNAPLNR 536
>sp|Q6NRZ4|C43BP_XENLA Collagen type IV alpha-3-binding protein OS=Xenopus laevis
GN=col4a3bp PE=2 SV=1
Length = 617
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V E +S + I+ +Q HK +WP +QRD ++ S + VP S+ + + WIV N S
Sbjct: 468 TIENFHVVEKLSPNAIIVYQTHKRVWPASQRDVLYLSAIRVVPAASENE-MDTWIVCNFS 526
Query: 81 TDLDAYPVSR 90
D D P++R
Sbjct: 527 VDHDKAPLNR 536
>sp|Q5M7Y0|C43BP_DANRE Collagen type IV alpha-3-binding protein OS=Danio rerio GN=col4a3bp
PE=1 SV=2
Length = 620
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET+S+ + Q K +WP +QRD ++ S M ++ ++ D + W+V N S
Sbjct: 470 TVESFQVVETLSDQACIIHQTLKRVWPASQRDVLYVSVMRKILSTNENDP-DTWLVCNFS 528
Query: 81 TDLDAYPVSRR 91
D D YP S R
Sbjct: 529 VDHDGYPPSTR 539
>sp|Q96WX9|AGUA_ASPNG Probable alpha-glucuronidase A OS=Aspergillus niger GN=aguA PE=2
SV=1
Length = 841
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 36 ILFWQIHKSIWPVTQRDAV--FWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAY 86
+++ H +W RDA+ F+ +MT +PD + R + W + S LD Y
Sbjct: 662 LVYQAGHSIVW----RDAINNFYYNMTGIPDVAGRVGHHPWRIEAESMRLDGY 710
>sp|O42814|AGUA_ASPTU Alpha-glucuronidase A OS=Aspergillus tubingensis GN=aguA PE=1 SV=1
Length = 841
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 36 ILFWQIHKSIWPVTQRDAV--FWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAY 86
+++ H +W RDA+ F+ +MT +PD + R + W + S LD Y
Sbjct: 662 LVYQAGHSIVW----RDAINNFYYNMTGIPDVAGRVGHHPWRIEAESMRLDGY 710
>sp|Q2LZ62|POMT1_DROPS Protein O-mannosyltransferase 1 OS=Drosophila pseudoobscura
pseudoobscura GN=rt PE=3 SV=2
Length = 908
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 42 HKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIV 76
H +++PV +D SH QV S +D N WIV
Sbjct: 497 HAAVYPVRYKDKRGSSHQQQVTCYSFKDVNNWWIV 531
>sp|A2R3X3|AGUA_ASPNC Probable alpha-glucuronidase A OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=aguA PE=3 SV=1
Length = 841
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 42 HKSIWPVTQRDAV--FWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAY 86
H +W RDA+ F+ +MT +PD + R + W + S LD Y
Sbjct: 668 HSIVW----RDAINNFYYNMTGIPDVAGRVGHHPWRIEAESMGLDGY 710
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.128 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,661,800
Number of Sequences: 539616
Number of extensions: 1077095
Number of successful extensions: 2305
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2295
Number of HSP's gapped (non-prelim): 13
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)