Query psy6220
Match_columns 101
No_of_seqs 76 out of 78
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:47:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1739|consensus 100.0 2.2E-35 4.7E-40 248.6 4.5 86 10-96 450-535 (611)
2 cd08872 START_STARD11-like Cer 100.0 5.4E-28 1.2E-32 185.4 9.9 88 10-97 73-160 (235)
3 cd08907 START_STARD8-like C-te 99.9 4.1E-24 8.9E-29 163.5 6.5 86 4-99 66-152 (205)
4 cd08910 START_STARD2-like Lipi 99.8 4E-21 8.7E-26 144.0 7.7 92 2-99 61-153 (207)
5 cd08911 START_STARD7-like Lipi 99.8 1.9E-20 4.1E-25 139.9 8.2 89 5-99 60-150 (207)
6 cd08909 START_STARD13-like C-t 99.8 2E-20 4.4E-25 142.4 7.6 86 5-99 67-152 (205)
7 KOG2761|consensus 99.8 2.7E-20 5.9E-25 143.8 7.5 91 3-100 66-158 (219)
8 cd08904 START_STARD6-like Lipi 99.8 3.1E-20 6.7E-25 140.6 6.2 89 3-98 58-149 (204)
9 smart00234 START in StAR and p 99.8 1.8E-19 3.9E-24 130.6 8.6 83 10-99 66-149 (206)
10 cd08871 START_STARD10-like Lip 99.8 3.3E-19 7.2E-24 133.1 7.2 90 2-99 59-149 (222)
11 cd08906 START_STARD3-like Chol 99.8 1.8E-19 3.8E-24 135.6 4.9 88 2-98 60-152 (209)
12 cd08873 START_STARD14_15-like 99.8 3.5E-19 7.6E-24 138.1 6.6 92 3-99 89-181 (235)
13 cd08868 START_STARD1_3_like Ch 99.8 3.4E-19 7.5E-24 131.9 5.5 89 3-99 60-152 (208)
14 cd08914 START_STARD15-like Lip 99.8 9.4E-19 2E-23 136.0 6.5 91 3-99 90-182 (236)
15 cd08908 START_STARD12-like C-t 99.7 3E-18 6.5E-23 130.2 7.2 84 5-99 67-151 (204)
16 cd08870 START_STARD2_7-like Li 99.7 3.8E-18 8.1E-23 127.1 7.6 89 3-99 63-153 (209)
17 cd08913 START_STARD14-like Lip 99.7 6.5E-18 1.4E-22 131.0 6.3 89 5-99 95-186 (240)
18 cd08867 START_STARD4_5_6-like 99.7 7.4E-18 1.6E-22 124.6 5.5 84 9-99 65-152 (206)
19 cd08874 START_STARD9-like C-te 99.7 4.7E-17 1E-21 123.3 7.0 88 4-99 58-149 (205)
20 cd08869 START_RhoGAP C-termina 99.7 1.3E-16 2.7E-21 118.5 9.1 79 13-99 65-144 (197)
21 cd08903 START_STARD5-like Lipi 99.7 4.2E-17 9E-22 122.2 5.5 83 5-96 60-149 (208)
22 cd08905 START_STARD1-like Chol 99.7 1.1E-16 2.4E-21 120.0 6.1 81 10-99 70-153 (209)
23 cd00177 START Lipid-binding ST 99.6 1.5E-15 3.3E-20 106.4 8.9 82 10-98 59-140 (193)
24 PF01852 START: START domain; 99.6 9.2E-16 2E-20 110.7 6.6 76 17-99 71-149 (206)
25 PLN00188 enhanced disease resi 99.6 1.4E-15 3.1E-20 132.7 5.3 77 14-97 252-331 (719)
26 cd08876 START_1 Uncharacterize 99.5 2.2E-14 4.8E-19 103.6 6.4 90 3-99 53-143 (195)
27 cd08877 START_2 Uncharacterize 99.3 3.4E-12 7.4E-17 94.9 7.9 84 10-99 66-160 (215)
28 cd08902 START_STARD4-like Lipi 99.3 2.8E-12 6E-17 98.3 5.9 77 10-96 67-145 (202)
29 cd08864 SRPBCC_DUF3074 DUF3074 99.1 3E-10 6.5E-15 86.3 9.2 82 12-99 62-151 (208)
30 PF11274 DUF3074: Protein of u 97.9 9.6E-05 2.1E-09 55.4 9.3 81 18-98 34-126 (184)
31 cd08875 START_ArGLABRA2_like C 97.3 0.00052 1.1E-08 53.7 5.2 76 15-97 82-171 (229)
32 cd01816 Raf_RBD Ubiquitin doma 29.9 30 0.00064 23.1 1.1 21 5-25 41-64 (74)
33 PHA02678 hypothetical protein; 28.7 1.1E+02 0.0023 21.2 3.7 16 31-47 3-18 (89)
34 PF05846 Chordopox_A15: Chordo 25.9 37 0.0008 23.4 1.1 14 31-48 3-16 (90)
35 PF10419 TFIIIC_sub6: TFIIIC s 20.8 47 0.001 18.8 0.6 21 2-22 8-28 (35)
No 1
>KOG1739|consensus
Probab=100.00 E-value=2.2e-35 Score=248.55 Aligned_cols=86 Identities=38% Similarity=0.657 Sum_probs=84.6
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPVS 89 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~~ 89 (101)
+|++||++||||||+|+|||+|++||+|+||+|||+|||+|||++||||||++++..++++ |+|||||+|++|.++|.+
T Consensus 450 ~~~~~rndwettle~~~vve~is~d~~~~~qthkrvwpasqrd~lf~shirki~~~~e~ga-d~wivcn~s~~~a~~pl~ 528 (611)
T KOG1739|consen 450 WNVDVRNDWETTLENFHVVETISDDAIIIYQTHKRVWPASQRDVLFLSHIRKIPALTENGA-DTWIVCNFSVDHASAPLN 528 (611)
T ss_pred cChhhhcchhhhhhhceeeeeecCCeEEEEecccccCCCCcchhHHHHHHhhcccccCCCC-ceEEEecCccccccCccC
Confidence 7999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCcEEEE
Q psy6220 90 RRRVTQT 96 (101)
Q Consensus 90 ~~~VRa~ 96 (101)
+.||||-
T Consensus 529 n~cvr~~ 535 (611)
T KOG1739|consen 529 NRCVRAK 535 (611)
T ss_pred CceEEEe
Confidence 9999984
No 2
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.95 E-value=5.4e-28 Score=185.40 Aligned_cols=88 Identities=39% Similarity=0.691 Sum_probs=84.8
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPVS 89 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~~ 89 (101)
+|++||.+||++++++++||+|++++.|+||.+|++||++|||+|+++++++.++..++++++.|++||+|++||++|++
T Consensus 73 ~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~ 152 (235)
T cd08872 73 FDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLN 152 (235)
T ss_pred hChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999987766777999999999999999999
Q ss_pred CCcEEEEE
Q psy6220 90 RRRVTQTV 97 (101)
Q Consensus 90 ~~~VRa~~ 97 (101)
+|+||+..
T Consensus 153 ~g~VRv~~ 160 (235)
T cd08872 153 NKCVRAKL 160 (235)
T ss_pred CCeEEEEE
Confidence 99999986
No 3
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.90 E-value=4.1e-24 Score=163.53 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=79.0
Q ss_pred ceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCC
Q psy6220 4 PFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTD 82 (101)
Q Consensus 4 ~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~ 82 (101)
.+|+|+ || |+.||.+|.+.++||+|++||+|+||+.+++-|.++||+|.+|+|+..... +.++++|+||+
T Consensus 66 ~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~------g~~iI~~~SV~ 136 (205)
T cd08907 66 VVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPR------GGCLLVSQSVD 136 (205)
T ss_pred HHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEEEEEEEccCCCC------CCEEEEEeccc
Confidence 468888 88 999999999999999999999999999999999999999999999744321 46999999999
Q ss_pred CCCCCCCCCcEEEEEEe
Q psy6220 83 LDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 83 H~~~P~~~~~VRa~~l~ 99 (101)
|+++||.+| |||++|+
T Consensus 137 H~~~pp~~g-VRa~~l~ 152 (205)
T cd08907 137 HDNPQLEAG-VRAVLLT 152 (205)
T ss_pred CCcCCCCCC-eEEEEEe
Confidence 999999999 9999986
No 4
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.84 E-value=4e-21 Score=143.95 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=79.3
Q ss_pred CCceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 2 SPPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 2 ~~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
+|..|+.. +|++||++|++++++ ++|.+++++.|+|+..|.|||+++||+|++++++..+.. .+..|||+|+|
T Consensus 61 s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~----~~~~~iv~~~s 134 (207)
T cd08910 61 SPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVE----GRKIWVILARS 134 (207)
T ss_pred CHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCC----CCeEEEEEecC
Confidence 34445544 899999999999997 689999999999999999999999999999998866531 12489999999
Q ss_pred CCCCCCCCCCCcEEEEEEe
Q psy6220 81 TDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 81 v~H~~~P~~~~~VRa~~l~ 99 (101)
++||++|+++|+||+..+.
T Consensus 135 ~~~p~~P~~~~~VRv~~~~ 153 (207)
T cd08910 135 TSLPQLPEKPGVIRVKQYK 153 (207)
T ss_pred CCCCCCCCCCCCEEEEEEE
Confidence 9999999999999998764
No 5
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.83 E-value=1.9e-20 Score=139.92 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=79.9
Q ss_pred eeeee-cCcchhhhhHhhhhheeeeeccCC-CceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCC
Q psy6220 5 FLFRS-NETTATLDACATLEKMTVAETISE-DTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTD 82 (101)
Q Consensus 5 ~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~-nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~ 82 (101)
.+|.. +|+++|.+||.+++++++||.+++ ++.|+|+..|.|||+++||+|+.++++..++ .+.++|+|+|++
T Consensus 60 ~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~------~~~~~i~~~sv~ 133 (207)
T cd08911 60 DFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE------NKLIVIVSKAVQ 133 (207)
T ss_pred HHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC------CCEEEEEEecCC
Confidence 34443 899999999999999999999765 9999999999999999999999999877764 258999999999
Q ss_pred CCCCCCCCCcEEEEEEe
Q psy6220 83 LDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 83 H~~~P~~~~~VRa~~l~ 99 (101)
||.+|+.+|+||+.++.
T Consensus 134 hp~~P~~~g~VRv~~~~ 150 (207)
T cd08911 134 HPSYPESPKKVRVEDYW 150 (207)
T ss_pred CCCCCCCCCCEEEEEeE
Confidence 99999999999998764
No 6
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.82 E-value=2e-20 Score=142.36 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=76.4
Q ss_pred eeeeecCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCC
Q psy6220 5 FLFRSNETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLD 84 (101)
Q Consensus 5 ~~~~~~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~ 84 (101)
+|+++-+ +|.+||.++++.++||+|+++|+|+||..|+++|++.||+|.+++|+.-... +.|+++|+||+|+
T Consensus 67 VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~------G~~vi~~~Sv~H~ 138 (205)
T cd08909 67 VLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPK------GACSLVSVSVEHE 138 (205)
T ss_pred HHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCC------CcEEEEEecCCCC
Confidence 4556622 7999999999999999999999999999999999999999999999765421 5799999999999
Q ss_pred CCCCCCCcEEEEEEe
Q psy6220 85 AYPVSRRRVTQTVLQ 99 (101)
Q Consensus 85 ~~P~~~~~VRa~~l~ 99 (101)
++|+. |.|||.++.
T Consensus 139 ~~p~~-g~VRa~~~~ 152 (205)
T cd08909 139 EAPLL-GGVRAVVLD 152 (205)
T ss_pred cCCCC-CcEEEEEEc
Confidence 99995 999999885
No 7
>KOG2761|consensus
Probab=99.82 E-value=2.7e-20 Score=143.80 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=83.8
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccC-CCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETIS-EDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls-~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
|-.++-. ||.|||++||+++.++.+||... .+|.|+|...|.+.|.++||.|+++.|+..++ ..+.+||.|
T Consensus 66 p~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~-------k~~~i~s~~ 138 (219)
T KOG2761|consen 66 PEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDE-------KDYYIVSKS 138 (219)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCC-------ceEEEEEec
Confidence 3344444 99999999999999999999998 89999999999999999999999999999986 588999999
Q ss_pred CCCCCCCCCCCcEEEEEEee
Q psy6220 81 TDLDAYPVSRRRVTQTVLQV 100 (101)
Q Consensus 81 v~H~~~P~~~~~VRa~~l~~ 100 (101)
|+||++|+.+++||+.+++.
T Consensus 139 v~h~s~P~~~~~vRv~~~~s 158 (219)
T KOG2761|consen 139 VQHPSYPPLKKKVRVTVYRS 158 (219)
T ss_pred ccCCCcCCcCCcEEEEEEEE
Confidence 99999999999999999875
No 8
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.81 E-value=3.1e-20 Score=140.63 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=78.2
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeee-eCC-CCCcceEEeeccccCCCCCCCCCCceEEEEEe
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKS-IWP-VTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNN 79 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKr-vwP-asqRD~vflss~r~~~~~~~~~~~d~wiV~N~ 79 (101)
|+.+|.. +|+++|.+||.+++++++||+|++||+|+|+.-+. .++ +++||+|.++||++... +.|++++.
T Consensus 58 ~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-------~~~ii~~~ 130 (204)
T cd08904 58 PAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-------NMNIVSSV 130 (204)
T ss_pred HHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-------CEEEEEEE
Confidence 3444544 88999999999999999999999999999977664 455 99999999999998764 78999999
Q ss_pred CCCCCCCCCCCCcEEEEEE
Q psy6220 80 STDLDAYPVSRRRVTQTVL 98 (101)
Q Consensus 80 Sv~H~~~P~~~~~VRa~~l 98 (101)
||+||++||.+|+|||...
T Consensus 131 sv~Hp~~Pp~~g~VRa~n~ 149 (204)
T cd08904 131 SVEYPQCPPSSNYIRGYNH 149 (204)
T ss_pred ecccCCCCCCCCcEEEeee
Confidence 9999999999999999764
No 9
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.80 E-value=1.8e-19 Score=130.60 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=78.6
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeC-CCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIW-PVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPV 88 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvw-PasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~ 88 (101)
.|.++|.+||.++.++++||.+++++.|.|++.|.+| |+++||+|+++++++.++ +.|+|++.|++||++|+
T Consensus 66 ~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~-------~~~vi~~~Sv~~~~~p~ 138 (206)
T smart00234 66 DDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD-------GSYAVVDVSVTHPTSPP 138 (206)
T ss_pred hcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC-------CcEEEEEEECCCCCCCC
Confidence 8999999999999999999999999999999999999 999999999999998654 78999999999999999
Q ss_pred CCCcEEEEEEe
Q psy6220 89 SRRRVTQTVLQ 99 (101)
Q Consensus 89 ~~~~VRa~~l~ 99 (101)
.+|+||+..+.
T Consensus 139 ~~~~VR~~~~~ 149 (206)
T smart00234 139 TSGYVRAENLP 149 (206)
T ss_pred CCCceEEEEec
Confidence 99999998754
No 10
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.78 E-value=3.3e-19 Score=133.12 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 2 SPPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 2 ~~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
+|..+|.. +|+++|++||.++.+.++||.+++++.|.|+..|.+||+++||+|++++++..+ +.++|++.|
T Consensus 59 s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~--------~~~vi~~~s 130 (222)
T cd08871 59 PAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG--------GEYIIFNHS 130 (222)
T ss_pred CHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC--------CEEEEEecc
Confidence 34456665 899999999999999999999999999999999999999999999999998766 688999999
Q ss_pred CCCCCCCCCCCcEEEEEEe
Q psy6220 81 TDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 81 v~H~~~P~~~~~VRa~~l~ 99 (101)
++||++|+++|+||+..+.
T Consensus 131 v~~~~~P~~~g~VR~~~~~ 149 (222)
T cd08871 131 VKHKKYPPRKGFVRAISLL 149 (222)
T ss_pred ccCCCCCCCCCeEEeEEEc
Confidence 9999999999999998753
No 11
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.78 E-value=1.8e-19 Score=135.63 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=80.3
Q ss_pred CCceeee--ecCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeC---CCCCcceEEeeccccCCCCCCCCCCceEEE
Q psy6220 2 SPPFLFR--SNETTATLDACATLEKMTVAETISEDTILFWQIHKSIW---PVTQRDAVFWSHMTQVPDPSDRDAQNIWIV 76 (101)
Q Consensus 2 ~~~~~~~--~~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvw---PasqRD~vflss~r~~~~~~~~~~~d~wiV 76 (101)
+|..||- .+|+++|.+|++++.++++||++++|+.|.| ..+.+| |+++||+|.++++.+.+ +.|++
T Consensus 60 ~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~--------~~~i~ 130 (209)
T cd08906 60 PAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRR--------DRYVS 130 (209)
T ss_pred CHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEE-EEccccccCCCCCCceEEEEEEEecC--------CcEEE
Confidence 4556663 4999999999999999999999999999998 888888 89999999999999877 67999
Q ss_pred EEeCCCCCCCCCCCCcEEEEEE
Q psy6220 77 VNNSTDLDAYPVSRRRVTQTVL 98 (101)
Q Consensus 77 ~N~Sv~H~~~P~~~~~VRa~~l 98 (101)
+|.|++|+.+|+.+|+||+.++
T Consensus 131 ~~~sv~~~~~P~~~~~VR~~~~ 152 (209)
T cd08906 131 AGISTTHSHKPPLSKYVRGENG 152 (209)
T ss_pred EEEEEecCCCCCCCCeEEEeee
Confidence 9999999999999999999854
No 12
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.78 E-value=3.5e-19 Score=138.11 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=82.1
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCC
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNST 81 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv 81 (101)
|..+|-. +|+++|.+||..+.++++||+++++..|.|+.-+.+||+++||+|.++++++..+. ++.++|+|.||
T Consensus 89 ~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~-----~~~~~I~~~SV 163 (235)
T cd08873 89 ASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATD-----GDPYKVAFRSV 163 (235)
T ss_pred HHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCC-----CCeEEEEEeee
Confidence 3344545 99999999999999999999999999999999999999999999999999874431 15699999999
Q ss_pred CCCCCCCCCCcEEEEEEe
Q psy6220 82 DLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 82 ~H~~~P~~~~~VRa~~l~ 99 (101)
.||.+||.+|+||+.+++
T Consensus 164 ~h~~~Pp~kgyVR~~~~~ 181 (235)
T cd08873 164 TLPRVPQTPGYSRTEVAC 181 (235)
T ss_pred ecccCCCCCCeEEEEEEe
Confidence 999999999999999876
No 13
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.77 E-value=3.4e-19 Score=131.89 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred Cceeee-e-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeee--CCCCCcceEEeeccccCCCCCCCCCCceEEEEE
Q psy6220 3 PPFLFR-S-NETTATLDACATLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78 (101)
Q Consensus 3 ~~~~~~-~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrv--wPasqRD~vflss~r~~~~~~~~~~~d~wiV~N 78 (101)
|..+|. . .|.++|.+|+..+.++++||++++++.|+|+.-+.. ||+++||+|+++++++.+ +.++|++
T Consensus 60 ~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~--------~~~~i~~ 131 (208)
T cd08868 60 AEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE--------NCYLSSG 131 (208)
T ss_pred HHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecC--------CeEEEEE
Confidence 444554 2 699999999999999999999999999999998876 999999999999999876 5799999
Q ss_pred eCCCCCCCCCCCCcEEEEEEe
Q psy6220 79 NSTDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 79 ~Sv~H~~~P~~~~~VRa~~l~ 99 (101)
.|++||++|+++|.|||..+.
T Consensus 132 ~sv~h~~~P~~~g~VR~~~~~ 152 (208)
T cd08868 132 VSVEHPAMPPTKNYVRGENGP 152 (208)
T ss_pred EeccCCCCCCCCCeEEEeccc
Confidence 999999999999999998653
No 14
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.76 E-value=9.4e-19 Score=136.03 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=79.5
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeC-CCCCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIW-PVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvw-PasqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
+..||-. ||+++|.+|+..++++++||++++|+. +||.-+-+| |+++||+++++++++-.+. ++.++|+|+|
T Consensus 90 ~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d-----g~~~~I~~~S 163 (236)
T cd08914 90 AHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKD-----GNTYVVAVKS 163 (236)
T ss_pred HHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCC-----CCEEEEEEee
Confidence 3345555 999999999999999999999999999 788888999 9999999999998766621 2469999999
Q ss_pred CCCCCCCCCCCcEEEEEEe
Q psy6220 81 TDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 81 v~H~~~P~~~~~VRa~~l~ 99 (101)
|.||.+|+.+|+||+.+++
T Consensus 164 Vp~~~~Pp~kg~VRv~~~~ 182 (236)
T cd08914 164 VILPSVPPSPQYIRSEIIC 182 (236)
T ss_pred cccccCCCCCCcEEeEEEE
Confidence 9999999999999999853
No 15
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.75 E-value=3e-18 Score=130.18 Aligned_cols=84 Identities=24% Similarity=0.244 Sum_probs=73.8
Q ss_pred eeeeecCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeecccc-CCCCCCCCCCceEEEEEeCCCC
Q psy6220 5 FLFRSNETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQ-VPDPSDRDAQNIWIVVNNSTDL 83 (101)
Q Consensus 5 ~~~~~~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~-~~~~~~~~~~d~wiV~N~Sv~H 83 (101)
+|.+..|. |..||..++++++||+|++|+.|+||..+.+||+++||+|.+|+|+. .++ +.++++|+|++|
T Consensus 67 vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~-------g~~~I~~~Sv~h 137 (204)
T cd08908 67 ILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPK-------GACALLATSVDH 137 (204)
T ss_pred HHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCC-------CeEEEEEeecCc
Confidence 34455555 89999999999999999999999999999999999999999988865 343 678999999999
Q ss_pred CCCCCCCCcEEEEEEe
Q psy6220 84 DAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 84 ~~~P~~~~~VRa~~l~ 99 (101)
+.+|++ .|||.+++
T Consensus 138 ~~~P~~--~VR~~~~~ 151 (204)
T cd08908 138 DRAPVA--GVRVNVLL 151 (204)
T ss_pred ccCCcC--ceEEEEEe
Confidence 999977 59999875
No 16
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.75 E-value=3.8e-18 Score=127.08 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=78.8
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCC-CceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISE-DTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~-nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
|..|+.. +|.+||++||.+++++++||..++ ++.|+|+..|.|||+++||+|+.+.++...+ +.++|++.|
T Consensus 63 ~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~-------~~~~i~~~s 135 (209)
T cd08870 63 PELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD-------RSYVCVTKG 135 (209)
T ss_pred HHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC-------CEEEEEEeC
Confidence 3444555 899999999999999999999665 6999999999999999999999998887643 689999999
Q ss_pred CCCCCCCCCCCcEEEEEEe
Q psy6220 81 TDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 81 v~H~~~P~~~~~VRa~~l~ 99 (101)
++||++|++ |.||+.++.
T Consensus 136 v~~~~~P~~-~~vRv~~~~ 153 (209)
T cd08870 136 VPYPSVPRS-GRKRVDDYE 153 (209)
T ss_pred CcCCCCCCC-CcEEEEEEE
Confidence 999999999 999998765
No 17
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.72 E-value=6.5e-18 Score=130.97 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=76.8
Q ss_pred eeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeC--CCCCcceEEeeccccCCCCCCCCCCceEEEEEeCC
Q psy6220 5 FLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIW--PVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNST 81 (101)
Q Consensus 5 ~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvw--PasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv 81 (101)
.||-. +|+++|.+|+.+++++++||+++++.. +||.--.+| |+++||+|.++++++..+. ++.|+|+|+|+
T Consensus 95 ~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~-----g~~yii~~~sv 168 (240)
T cd08913 95 QAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDN-----GDPYVIALRSV 168 (240)
T ss_pred HHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCC-----CccEEEEEEEe
Confidence 34444 999999999999999999999999976 577776777 9999999999999775432 26899999999
Q ss_pred CCCCCCCCCCcEEEEEEe
Q psy6220 82 DLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 82 ~H~~~P~~~~~VRa~~l~ 99 (101)
.||++|+.+|+||+..+.
T Consensus 169 ~~P~~Pp~kgyVR~~~~~ 186 (240)
T cd08913 169 TLPTHPPTPEYTRGETLC 186 (240)
T ss_pred ecCCCCCCCCcEEeeecc
Confidence 999999999999998764
No 18
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.72 E-value=7.4e-18 Score=124.60 Aligned_cols=84 Identities=24% Similarity=0.155 Sum_probs=74.3
Q ss_pred ecC--cchhhhhHhhhhheeeeeccCCCceEEEEEeeee--CCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCC
Q psy6220 9 SNE--TTATLDACATLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLD 84 (101)
Q Consensus 9 ~~d--~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrv--wPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~ 84 (101)
++| .++|.+|+++++++++||++++++.|.|+..+.+ +++++||+|+++++++.++ +.++++++||+||
T Consensus 65 l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~-------~~~~i~~~Sv~hp 137 (206)
T cd08867 65 IIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED-------NQWSSSGKSVDIP 137 (206)
T ss_pred HHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC-------CeEEEEEEeccCC
Confidence 366 8999999999999999999999999999954432 4599999999999999885 5899999999999
Q ss_pred CCCCCCCcEEEEEEe
Q psy6220 85 AYPVSRRRVTQTVLQ 99 (101)
Q Consensus 85 ~~P~~~~~VRa~~l~ 99 (101)
++|+.+|+|||..+.
T Consensus 138 ~~p~~~~~VR~~~~~ 152 (206)
T cd08867 138 ERPPTPGFVRGYNHP 152 (206)
T ss_pred CCCCCCCcEEEEeec
Confidence 999999999998653
No 19
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.69 E-value=4.7e-17 Score=123.25 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=79.6
Q ss_pred ceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCC--CCcceEEeeccccCCCCCCCCCCceEEEEEeC
Q psy6220 4 PFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPV--TQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80 (101)
Q Consensus 4 ~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPa--sqRD~vflss~r~~~~~~~~~~~d~wiV~N~S 80 (101)
..++.. +|+++|.+|+..++++++||++++++-|.||..+.+||+ ++||+|.+++++..+ +.+++.+.|
T Consensus 58 ~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~--------~~~vi~~~S 129 (205)
T cd08874 58 ATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEG--------ELSVVACQS 129 (205)
T ss_pred HHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECC--------CcEEEEEEe
Confidence 334444 999999999999999999999999999999999999999 999999999998866 577788999
Q ss_pred CCCCCCCCCC-CcEEEEEEe
Q psy6220 81 TDLDAYPVSR-RRVTQTVLQ 99 (101)
Q Consensus 81 v~H~~~P~~~-~~VRa~~l~ 99 (101)
|.||.+|+.+ |+||+..+.
T Consensus 130 V~~~~~P~~~~~~VR~~~~~ 149 (205)
T cd08874 130 VYDKSMPEPGRSLVRGEILP 149 (205)
T ss_pred cccccCCCCCCCeEEeeeEe
Confidence 9999999986 999999875
No 20
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.69 E-value=1.3e-16 Score=118.53 Aligned_cols=79 Identities=23% Similarity=0.222 Sum_probs=69.7
Q ss_pred chhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCC-CCCCCCC
Q psy6220 13 TATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLD-AYPVSRR 91 (101)
Q Consensus 13 dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~-~~P~~~~ 91 (101)
++|.+||..+.++++||++++++.|+||..+.+||+++||+|.+++++.-... +.+++.+.||+|| .+|+ |
T Consensus 65 d~r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~------g~~~i~~~Sv~~~~~~p~--g 136 (197)
T cd08869 65 RERHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPK------GACVLVETSVEHTEPVPL--G 136 (197)
T ss_pred HHHhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCC------CcEEEEEECCcCCCCCCC--C
Confidence 46899999999999999999999999999999999999999999998754431 5799999999996 4555 9
Q ss_pred cEEEEEEe
Q psy6220 92 RVTQTVLQ 99 (101)
Q Consensus 92 ~VRa~~l~ 99 (101)
+|||..+.
T Consensus 137 ~VR~~~~~ 144 (197)
T cd08869 137 GVRAVVLA 144 (197)
T ss_pred CEEEEEEe
Confidence 99999864
No 21
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.68 E-value=4.2e-17 Score=122.17 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=70.4
Q ss_pred eeeee-cC--cchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCC----CCCcceEEeeccccCCCCCCCCCCceEEEE
Q psy6220 5 FLFRS-NE--TTATLDACATLEKMTVAETISEDTILFWQIHKSIWP----VTQRDAVFWSHMTQVPDPSDRDAQNIWIVV 77 (101)
Q Consensus 5 ~~~~~-~d--~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwP----asqRD~vflss~r~~~~~~~~~~~d~wiV~ 77 (101)
-+|.. +| .++|.+|+.+++++++||+|++++.|.|+ |.+|| +++||+|..+++++.++ +.+++.
T Consensus 60 ~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d-------~~i~i~ 130 (208)
T cd08903 60 QVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYED-------GTISSN 130 (208)
T ss_pred HHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCC-------ceEEEe
Confidence 34444 54 45899999999999999999999999777 89998 99999999999999874 455544
Q ss_pred EeCCCCCCCCCCCCcEEEE
Q psy6220 78 NNSTDLDAYPVSRRRVTQT 96 (101)
Q Consensus 78 N~Sv~H~~~P~~~~~VRa~ 96 (101)
-.|++||++|+++|+|||.
T Consensus 131 ~~sv~h~~~P~~~~~VR~~ 149 (208)
T cd08903 131 ATNVEHPLCPPQAGFVRGF 149 (208)
T ss_pred EEeccCCCCCCCCCeEEEe
Confidence 4499999999999999993
No 22
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.66 E-value=1.1e-16 Score=119.99 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=75.1
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCC---CCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWP---VTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAY 86 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwP---asqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~ 86 (101)
+|.+.+.+|+.++.++++||++++++.|+|+ ...+|| +++||+|..+++++.+ +..++++.|++||++
T Consensus 70 ~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~--------~~~~~~~~s~~~~~~ 140 (209)
T cd08905 70 DRMEQMGEWNPNVKEVKILQRIGKDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRG--------STCVLAGMATHFGLM 140 (209)
T ss_pred hchhhhceecccchHHHHHhhcCCCceEEEE-EeccCCCCccCccceEEEEEEEEcC--------CcEEEEEEeecCCCC
Confidence 6889999999999999999999999999998 778888 9999999999999887 567888999999999
Q ss_pred CCCCCcEEEEEEe
Q psy6220 87 PVSRRRVTQTVLQ 99 (101)
Q Consensus 87 P~~~~~VRa~~l~ 99 (101)
|+.+|+|||....
T Consensus 141 P~~~~~VR~~~~~ 153 (209)
T cd08905 141 PEQKGFIRAENGP 153 (209)
T ss_pred CCCCCeEEEEeec
Confidence 9999999997653
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.63 E-value=1.5e-15 Score=106.43 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=77.3
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPVS 89 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~~ 89 (101)
.|++.|.+|+..+++.+++|.+++++.|.|+.+|.+||+++||+|+++++...++ +.+++++.|++|+.+|..
T Consensus 59 ~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~-------~~~~~~~~Si~~~~~p~~ 131 (193)
T cd00177 59 MDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDD-------GTYVIVSKSVDHDSHPKE 131 (193)
T ss_pred hCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCC-------CeEEEEEeecCCCCCCCC
Confidence 6789999999999999999999999999999999999999999999999988873 689999999999999999
Q ss_pred CCcEEEEEE
Q psy6220 90 RRRVTQTVL 98 (101)
Q Consensus 90 ~~~VRa~~l 98 (101)
+++|||..+
T Consensus 132 ~~~vR~~~~ 140 (193)
T cd00177 132 KGYVRAEIK 140 (193)
T ss_pred CCcEEEEEE
Confidence 999999875
No 24
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.62 E-value=9.2e-16 Score=110.66 Aligned_cols=76 Identities=32% Similarity=0.452 Sum_probs=70.1
Q ss_pred hhHhhhhheeeeeccCCCceEEEEEeeeeC--CCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCC-CCCcE
Q psy6220 17 DACATLEKMTVAETISEDTILFWQIHKSIW--PVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPV-SRRRV 93 (101)
Q Consensus 17 ~WetT~e~~~vvE~Ls~nt~I~yqthKrvw--PasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~-~~~~V 93 (101)
+||.++.++.+||.+++++.|.|+.+|.+| |+++||+|+++++++..+ +.|+++..|++||++|+ .+|+|
T Consensus 71 ~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~-------~~~~i~~~Si~~~~~~~~~~~~V 143 (206)
T PF01852_consen 71 QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED-------GTYVIVSRSIDHPQYPPNSKGYV 143 (206)
T ss_dssp HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT-------SEEEEEEEEEEBTTSSTT-TTSE
T ss_pred hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc-------ceEEEEEeeeccccccccccCcc
Confidence 999999999999999999999999999999 999999999999999554 79999999999999999 99999
Q ss_pred EEEEEe
Q psy6220 94 TQTVLQ 99 (101)
Q Consensus 94 Ra~~l~ 99 (101)
||..+.
T Consensus 144 R~~~~~ 149 (206)
T PF01852_consen 144 RAEILI 149 (206)
T ss_dssp EEEEES
T ss_pred eeeeee
Confidence 998764
No 25
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.58 E-value=1.4e-15 Score=132.70 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=71.7
Q ss_pred hhhhhHhhhhheeeeeccCCCceEEEEEeeee---CCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCCCCC
Q psy6220 14 ATLDACATLEKMTVAETISEDTILFWQIHKSI---WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPVSR 90 (101)
Q Consensus 14 yR~~WetT~e~~~vvE~Ls~nt~I~yqthKrv---wPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P~~~ 90 (101)
+|.+||.+++++.+||+|+++|+|+|++.+.- |=.+.||+|+++.|++.++ ++|++++.||+||++||.+
T Consensus 252 ~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eD-------GsYvil~~Sv~Hp~cPP~k 324 (719)
T PLN00188 252 TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-------GSYVVLFRSREHENCGPQP 324 (719)
T ss_pred ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCC-------CcEEEeeeeeecCCCCCCC
Confidence 99999999999999999999999999999833 3677799999999999997 7899999999999999999
Q ss_pred CcEEEEE
Q psy6220 91 RRVTQTV 97 (101)
Q Consensus 91 ~~VRa~~ 97 (101)
|+|||-.
T Consensus 325 G~VRg~~ 331 (719)
T PLN00188 325 GFVRAHL 331 (719)
T ss_pred CeEEEEE
Confidence 9999965
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.52 E-value=2.2e-14 Score=103.64 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=77.7
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCC
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNST 81 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv 81 (101)
|.-+|.. .|.++|.+|+.++++.++||++++++.+.|+..+.+||+++||+++.++++...+ ...+++...|+
T Consensus 53 ~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~------~~~~~i~~~s~ 126 (195)
T cd08876 53 IEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDAD------DGSVTITLEAA 126 (195)
T ss_pred HHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCC------CCEEEEEeecC
Confidence 4445555 8999999999999999999999999999999999999999999999988866542 15788888999
Q ss_pred CCCCCCCCCCcEEEEEEe
Q psy6220 82 DLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 82 ~H~~~P~~~~~VRa~~l~ 99 (101)
+|+ +|+++++||+..+.
T Consensus 127 ~~~-~P~~~~~vR~~~~~ 143 (195)
T cd08876 127 PEA-LPEQKGYVRIKTVE 143 (195)
T ss_pred Ccc-CCCCCCeEEceece
Confidence 998 89999999997764
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.35 E-value=3.4e-12 Score=94.94 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=72.8
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEee-ccccCCCCCCCCCCceEEEEEeCCCCCC---
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWS-HMTQVPDPSDRDAQNIWIVVNNSTDLDA--- 85 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vfls-s~r~~~~~~~~~~~d~wiV~N~Sv~H~~--- 85 (101)
+|++++.+|...+.+..+|+.+++++.|+|+..+.+||+++||+|+.+ +...+++ .+..+|++.|++|+.
T Consensus 66 ~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~------~~~i~i~~~si~~~~~~~ 139 (215)
T cd08877 66 NEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE------NGQIVILLKSIDDDPEFL 139 (215)
T ss_pred ehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc------CCCEEEEEecCCCCcccc
Confidence 899999999999999999999999999999999999999999999863 3333422 168999999999886
Q ss_pred ------CCCCC-CcEEEEEEe
Q psy6220 86 ------YPVSR-RRVTQTVLQ 99 (101)
Q Consensus 86 ------~P~~~-~~VRa~~l~ 99 (101)
+|+.+ |+||+....
T Consensus 140 ~~~~~~iP~~~~~~vR~~~~~ 160 (215)
T cd08877 140 KLTDLDIPSTSAKGVRRIIKY 160 (215)
T ss_pred cccCCcCCCCCCCceEEEEec
Confidence 69988 999987653
No 28
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.32 E-value=2.8e-12 Score=98.35 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEE-EEEeeeeCC-CCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILF-WQIHKSIWP-VTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYP 87 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~-yqthKrvwP-asqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P 87 (101)
.+..+|.+||.+++++++||+|++||.|+ |.+-|..++ +++||+|-+++..+.+ |.++.|+-|++|++.|
T Consensus 67 ~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~--------d~~~s~gvs~~~~~~p 138 (202)
T cd08902 67 RPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYE--------DGLLSCGVSIEYEEAR 138 (202)
T ss_pred hcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeC--------CCeEEEEeeecCCCCC
Confidence 56778999999999999999999999998 666666654 6999999999998888 4669999999999988
Q ss_pred CCCCcEEEE
Q psy6220 88 VSRRRVTQT 96 (101)
Q Consensus 88 ~~~~~VRa~ 96 (101)
| |+|||.
T Consensus 139 p--g~VRge 145 (202)
T cd08902 139 P--NFVRGF 145 (202)
T ss_pred C--CeEeec
Confidence 7 999985
No 29
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.14 E-value=3e-10 Score=86.31 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=70.8
Q ss_pred cchhhhhHhhhh--heeeeeccCCCc----eEEEEEeeeeCCCCCcceEEeec-cccCCCCCCCCCCceEEEEEeCCCCC
Q psy6220 12 TTATLDACATLE--KMTVAETISEDT----ILFWQIHKSIWPVTQRDAVFWSH-MTQVPDPSDRDAQNIWIVVNNSTDLD 84 (101)
Q Consensus 12 ~dyR~~WetT~e--~~~vvE~Ls~nt----~I~yqthKrvwPasqRD~vflss-~r~~~~~~~~~~~d~wiV~N~Sv~H~ 84 (101)
.++.++|-..+. ++.+||..++.- .|.|++||.+||+++||++.+.. ....+. .+.+|+++.+++|+
T Consensus 62 ~~~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~------~~~~i~vs~p~~~~ 135 (208)
T cd08864 62 TEYEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDP------ASEFMVVSLPITPP 135 (208)
T ss_pred HhhhhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCC------CCeEEEEEEEecCC
Confidence 677789999998 899999998777 99999999999999999999988 333331 26899999999999
Q ss_pred CCC-CCCCcEEEEEEe
Q psy6220 85 AYP-VSRRRVTQTVLQ 99 (101)
Q Consensus 85 ~~P-~~~~~VRa~~l~ 99 (101)
.+| +.+|+|||....
T Consensus 136 ~~p~~~~~~Vr~~y~S 151 (208)
T cd08864 136 LVESLYENAVLGRYAS 151 (208)
T ss_pred cCCccCCCcEEEEEEE
Confidence 999 899999998554
No 30
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=97.95 E-value=9.6e-05 Score=55.39 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred hHhhhhheeeeecc----------CCCceEEEEEeeeeCCCCCcceEEeeccccCCC--CCCCCCCceEEEEEeCCCCCC
Q psy6220 18 ACATLEKMTVAETI----------SEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPD--PSDRDAQNIWIVVNNSTDLDA 85 (101)
Q Consensus 18 WetT~e~~~vvE~L----------s~nt~I~yqthKrvwPasqRD~vflss~r~~~~--~~~~~~~d~wiV~N~Sv~H~~ 85 (101)
.-..|...+.++.. +....|..-+||-++|+++||++.|-.....+. .........+||+..-++|++
T Consensus 34 yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~~~~~~~~~~f~vVs~P~~~~~ 113 (184)
T PF11274_consen 34 YIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKTEDDSTGPREFMVVSIPVDHPD 113 (184)
T ss_pred hccccceEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccccCCCCCCCeEEEEEEEcCCcc
Confidence 34556677888887 566788899999999999999988877766661 112222389999999999999
Q ss_pred CCCCCCcEEEEEE
Q psy6220 86 YPVSRRRVTQTVL 98 (101)
Q Consensus 86 ~P~~~~~VRa~~l 98 (101)
.|+.+|.|||..-
T Consensus 114 ~~~~~~~V~g~Y~ 126 (184)
T PF11274_consen 114 SPPRKGYVRGQYE 126 (184)
T ss_pred cCCCCCCEEEEEE
Confidence 9999999999753
No 31
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=97.28 E-value=0.00052 Score=53.65 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=63.7
Q ss_pred hhhhHh----hhhheeeeeccCCCc--------eEEEEEeeeeCCC-CCcceEEeeccccCCCCCCCCCCceEEEEEeCC
Q psy6220 15 TLDACA----TLEKMTVAETISEDT--------ILFWQIHKSIWPV-TQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNST 81 (101)
Q Consensus 15 R~~Wet----T~e~~~vvE~Ls~nt--------~I~yqthKrvwPa-sqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv 81 (101)
+++|-. -+....+++.|+.++ -+.|.-.+-+-|+ ..||+.|||-=.++++ +.|+||..|+
T Consensus 82 ~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~d-------G~w~VvdvSl 154 (229)
T cd08875 82 VNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLED-------GLWAVVDVSI 154 (229)
T ss_pred hhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCC-------CeEEEEEEee
Confidence 345666 778899999999884 5678778888885 5799999999999997 8999999999
Q ss_pred CCC-CCCCCCCcEEEEE
Q psy6220 82 DLD-AYPVSRRRVTQTV 97 (101)
Q Consensus 82 ~H~-~~P~~~~~VRa~~ 97 (101)
+|. ..|+.++++|+--
T Consensus 155 d~~~~~p~~~~~~r~~~ 171 (229)
T cd08875 155 DGVQTAPPPASFVRCRR 171 (229)
T ss_pred cccccCCCCCCccEEEE
Confidence 998 7888889999854
No 32
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=29.86 E-value=30 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=16.9
Q ss_pred eeeeecCc---chhhhhHhhhhhe
Q psy6220 5 FLFRSNET---TATLDACATLEKM 25 (101)
Q Consensus 5 ~~~~~~d~---dyR~~WetT~e~~ 25 (101)
..|+.+++ +++.+|||.+...
T Consensus 41 ~V~~~~~~~~~~~~i~W~td~~~L 64 (74)
T cd01816 41 AVFRLGDGSSKKLRIDWDTDISSL 64 (74)
T ss_pred EEEEcCCCcccccccchhhhhhhc
Confidence 36888888 7999999987643
No 33
>PHA02678 hypothetical protein; Provisional
Probab=28.66 E-value=1.1e+02 Score=21.19 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=11.1
Q ss_pred cCCCceEEEEEeeeeCC
Q psy6220 31 ISEDTILFWQIHKSIWP 47 (101)
Q Consensus 31 Ls~nt~I~yqthKrvwP 47 (101)
+++||+|+|-.-+ -||
T Consensus 3 VDDnTlIVy~~g~-~WP 18 (89)
T PHA02678 3 LDSDTVIVAVPGT-RFP 18 (89)
T ss_pred ccCCeEEEeecCC-CCC
Confidence 5789999984433 366
No 34
>PF05846 Chordopox_A15: Chordopoxvirus A15 protein; InterPro: IPR008445 This family consists of several Chordopoxvirus A15 like sequences.
Probab=25.92 E-value=37 Score=23.41 Aligned_cols=14 Identities=21% Similarity=0.956 Sum_probs=12.0
Q ss_pred cCCCceEEEEEeeeeCCC
Q psy6220 31 ISEDTILFWQIHKSIWPV 48 (101)
Q Consensus 31 Ls~nt~I~yqthKrvwPa 48 (101)
++|||+|+|-. ||.
T Consensus 3 VdDnTlivy~~----wP~ 16 (90)
T PF05846_consen 3 VDDNTLIVYNK----WPS 16 (90)
T ss_pred ccCcEEEEEcC----CCe
Confidence 57999999988 885
No 35
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=20.79 E-value=47 Score=18.80 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=17.3
Q ss_pred CCceeeeecCcchhhhhHhhh
Q psy6220 2 SPPFLFRSNETTATLDACATL 22 (101)
Q Consensus 2 ~~~~~~~~~d~dyR~~WetT~ 22 (101)
++.=++++-|.-|+..|+.++
T Consensus 8 t~~Pil~i~~~vf~G~~~~~i 28 (35)
T PF10419_consen 8 TENPILQIGNQVFEGEWEDTI 28 (35)
T ss_pred CCCCEEEECCEEEEEEEhhhc
Confidence 345578998889999999987
Done!