Query psy6220
Match_columns 101
No_of_seqs 76 out of 78
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:47:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e3n_A Lipid-transfer protein 99.9 6.1E-22 2.1E-26 147.7 6.3 91 6-97 89-180 (255)
2 1em2_A MLN64 protein; beta bar 99.8 2E-21 6.9E-26 142.7 5.2 90 2-99 77-170 (229)
3 3p0l_A Steroidogenic acute reg 99.8 8.1E-21 2.8E-25 139.1 6.7 89 2-98 66-158 (221)
4 2r55_A STAR-related lipid tran 99.8 6.6E-20 2.3E-24 134.4 7.9 82 10-98 89-172 (231)
5 2pso_A STAR-related lipid tran 99.8 7.8E-20 2.7E-24 137.2 6.6 77 15-99 98-175 (237)
6 1jss_A Stard4, cholesterol-reg 99.8 9.3E-20 3.2E-24 134.2 5.0 84 5-98 81-167 (224)
7 1ln1_A PC-TP, phosphatidylchol 99.7 9.9E-19 3.4E-23 125.8 4.6 88 6-99 68-156 (214)
8 3fo5_A Thioesterase, adipose a 99.7 3.7E-18 1.3E-22 131.3 3.8 89 3-98 100-192 (258)
9 3qsz_A STAR-related lipid tran 99.7 1.3E-17 4.3E-22 118.5 4.2 86 4-98 40-126 (189)
10 3kde_C Transposable element P 36.0 24 0.00081 22.7 2.4 27 6-37 16-43 (77)
11 1mty_G Methane monooxygenase h 27.0 14 0.00049 26.8 0.2 23 7-29 1-23 (162)
12 2zyz_A Putative uncharacterize 26.1 75 0.0026 21.3 3.7 29 22-50 82-110 (116)
No 1
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=99.85 E-value=6.1e-22 Score=147.71 Aligned_cols=91 Identities=31% Similarity=0.595 Sum_probs=82.2
Q ss_pred eeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCC
Q psy6220 6 LFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLD 84 (101)
Q Consensus 6 ~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~ 84 (101)
+|.. +|.++|.+|+.+++++++||+|++++.|+|+..|.+||+++||+|++++++..++..+.++ +.|+++++|++||
T Consensus 89 v~~~l~d~~~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~-~~~~i~~~Sv~~~ 167 (255)
T 2e3n_A 89 VCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDP-ETWIVCNFSVDHD 167 (255)
T ss_dssp HHHHHHCGGGHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSC-CEEEEEEEECCCT
T ss_pred HHHHHhCcchHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCC-CEEEEEEeccCCC
Confidence 4444 7999999999999999999999999999999999999999999999999999865444443 6899999999999
Q ss_pred CCCCCCCcEEEEE
Q psy6220 85 AYPVSRRRVTQTV 97 (101)
Q Consensus 85 ~~P~~~~~VRa~~ 97 (101)
++|+.+|+||+..
T Consensus 168 ~~P~~~g~VR~~~ 180 (255)
T 2e3n_A 168 SAPLNNRCVRAKI 180 (255)
T ss_dssp TSCCCSSSEECEE
T ss_pred CCCCCCCCEEEEE
Confidence 9999999999983
No 2
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.83 E-value=2e-21 Score=142.65 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCceee-ee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeee--eCCCCCcceEEeeccccCCCCCCCCCCceEEEE
Q psy6220 2 SPPFLF-RS-NETTATLDACATLEKMTVAETISEDTILFWQIHKS--IWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVV 77 (101)
Q Consensus 2 ~~~~~~-~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKr--vwPasqRD~vflss~r~~~~~~~~~~~d~wiV~ 77 (101)
+|.-+| .. +|.++|.+||.++.++++||.++++|.|.|+..+. .||+++||+|++++|+..+ +.|+++
T Consensus 77 ~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~--------~~~vi~ 148 (229)
T 1em2_A 77 PAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRR--------DRYLSS 148 (229)
T ss_dssp CHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECS--------SEEEEE
T ss_pred CHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcC--------CEEEEE
Confidence 344555 44 89999999999999999999999999998888776 6999999999999999975 689999
Q ss_pred EeCCCCCCCCCCCCcEEEEEEe
Q psy6220 78 NNSTDLDAYPVSRRRVTQTVLQ 99 (101)
Q Consensus 78 N~Sv~H~~~P~~~~~VRa~~l~ 99 (101)
+.||+||++|+.+|+|||..+.
T Consensus 149 ~~Sv~~~~~P~~~~~VR~~~~~ 170 (229)
T 1em2_A 149 GIATSHSAKPPTHKYVRGENGP 170 (229)
T ss_dssp EEECCCTTSCCCTTSEECEECS
T ss_pred EecccCCCCCCCCCCEeeeecc
Confidence 9999999999999999998653
No 3
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=139.07 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCceeeee--cCcchhhhhHhhhhheeeeeccCCCceEEEEEeee--eCCCCCcceEEeeccccCCCCCCCCCCceEEEE
Q psy6220 2 SPPFLFRS--NETTATLDACATLEKMTVAETISEDTILFWQIHKS--IWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVV 77 (101)
Q Consensus 2 ~~~~~~~~--~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKr--vwPasqRD~vflss~r~~~~~~~~~~~d~wiV~ 77 (101)
+|.-+|.. .|+++|.+||.+++++++||++++++.|.|++.+. .||+++||+|++++|++.+ +.|+++
T Consensus 66 ~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~--------~~~vi~ 137 (221)
T 3p0l_A 66 PMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRG--------STCVLA 137 (221)
T ss_dssp CHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECS--------SCEEEC
T ss_pred CHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcC--------CeEEEE
Confidence 34456664 48999999999999999999999999999999886 6899999999999999864 689999
Q ss_pred EeCCCCCCCCCCCCcEEEEEE
Q psy6220 78 NNSTDLDAYPVSRRRVTQTVL 98 (101)
Q Consensus 78 N~Sv~H~~~P~~~~~VRa~~l 98 (101)
+.|++||++|+.+|+|||..+
T Consensus 138 ~~Sv~~~~~P~~~g~VR~~~~ 158 (221)
T 3p0l_A 138 GMATDFGNMPEQKGVIRAEHG 158 (221)
T ss_dssp CEECCCTTSCCCTTSEECEEC
T ss_pred EEeccCCCCCCCCCeEEEecc
Confidence 999999999999999999865
No 4
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.6e-20 Score=134.42 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=74.6
Q ss_pred cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeee--CCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCCCCC
Q psy6220 10 NETTATLDACATLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYP 87 (101)
Q Consensus 10 ~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrv--wPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~~~P 87 (101)
+|.++|.+||.++.++++||.+++++.|.|+..+.. ||+++||+|+++++++.++ +.|++++.||+||++|
T Consensus 89 ~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~-------g~~vi~~~Sv~~~~~P 161 (231)
T 2r55_A 89 AVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED-------GTISSNATHVEHPLCP 161 (231)
T ss_dssp --CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT-------SCEEEEEEECCCTTSC
T ss_pred hCcchhhhhccccceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC-------CEEEEEEEeccCCCCC
Confidence 489999999999999999999999999988887664 7999999999999999864 6899999999999999
Q ss_pred CCCCcEEEEEE
Q psy6220 88 VSRRRVTQTVL 98 (101)
Q Consensus 88 ~~~~~VRa~~l 98 (101)
+.+|+|||..+
T Consensus 162 ~~~~~VR~~~~ 172 (231)
T 2r55_A 162 PKPGFVRGFNH 172 (231)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCCEEEEEE
Confidence 99999999865
No 5
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.79 E-value=7.8e-20 Score=137.25 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=72.4
Q ss_pred hhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeecccc-CCCCCCCCCCceEEEEEeCCCCCCCCCCCCcE
Q psy6220 15 TLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQ-VPDPSDRDAQNIWIVVNNSTDLDAYPVSRRRV 93 (101)
Q Consensus 15 R~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~-~~~~~~~~~~d~wiV~N~Sv~H~~~P~~~~~V 93 (101)
|.+||.++.++++||+|++++.|+|++.|.+||+++||+|++++|+. +++ +.|+||+.|++||++|+. |+|
T Consensus 98 r~~Wd~~~~~~~vle~id~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~-------g~~vi~~~Sv~h~~~P~~-g~V 169 (237)
T 2pso_A 98 RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPK-------GMCTLVSLSVEHEEAQLL-GGV 169 (237)
T ss_dssp GGGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCEEEEEEEEEESCCGG-------GCEEEEEEECCCTTCCCC-SSE
T ss_pred hhhHHhhhceEEEEEEcCCCcEEEEEEecCCCCcCCeEEEEEEEEEEECCC-------CEEEEEEEcccCCCCCCC-CcE
Confidence 99999999999999999999999999999999999999999999986 443 799999999999999999 999
Q ss_pred EEEEEe
Q psy6220 94 TQTVLQ 99 (101)
Q Consensus 94 Ra~~l~ 99 (101)
||..+.
T Consensus 170 R~~~~~ 175 (237)
T 2pso_A 170 RAVVMD 175 (237)
T ss_dssp ECCEEE
T ss_pred EEEEec
Confidence 998764
No 6
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=99.78 E-value=9.3e-20 Score=134.17 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=76.0
Q ss_pred eeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCC--CCCcceEEeeccccCCCCCCCCCCceEEEEEeCC
Q psy6220 5 FLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWP--VTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNST 81 (101)
Q Consensus 5 ~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwP--asqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv 81 (101)
.+|.. +|.++|.+||.++.++++||+|++++.|+||+.+..|| +++||+|++++|++.+ +.+++++.||
T Consensus 81 ~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~--------~~~vi~~~Sv 152 (224)
T 1jss_A 81 NVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYE--------EGLLSCGVSV 152 (224)
T ss_dssp HHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEET--------TEEEEEEEEC
T ss_pred HHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcC--------CeEEEEEeee
Confidence 34444 89999999999999999999999999999999999876 9999999999999987 5789999999
Q ss_pred CCCCCCCCCCcEEEEEE
Q psy6220 82 DLDAYPVSRRRVTQTVL 98 (101)
Q Consensus 82 ~H~~~P~~~~~VRa~~l 98 (101)
+||++| +|+|||..+
T Consensus 153 ~hp~~~--~g~VR~~~~ 167 (224)
T 1jss_A 153 EWSETR--PEFVRGYNH 167 (224)
T ss_dssp CCCCCC--TTSEECEEC
T ss_pred ecCCCC--CCCEEEEec
Confidence 999985 599999765
No 7
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=99.74 E-value=9.9e-19 Score=125.76 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=75.8
Q ss_pred eeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCCCC
Q psy6220 6 LFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLD 84 (101)
Q Consensus 6 ~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~H~ 84 (101)
+|.. +|.++|.+|+.++.++++||. +++.|+|+..|.+||+++||+|++++++.+++ +....|++++.|++||
T Consensus 68 v~~~l~d~~~r~~Wd~~~~~~~vle~--~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~----~g~~~~~i~~~Sv~~p 141 (214)
T 1ln1_A 68 LADIYMDSDYRKQWDQYVKELYEQEC--NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDM----EGRKIHVILARSTSMP 141 (214)
T ss_dssp HHHHHHCHHHHHHHCTTEEEEEEEEE--TTEEEEEEEECCCTTSCCEEEEEEEEEEEECS----TTCCEEEEEEEECCBT
T ss_pred HHHHHcCHHHHHHHHHHHhhEEEecc--CCCEEEEEEEEcCCCCCCceEEEEEEEEeccc----CCCeEEEEEEecccCC
Confidence 3433 799999999999999999998 44889999999999999999999999987752 1114799999999999
Q ss_pred CCCCCCCcEEEEEEe
Q psy6220 85 AYPVSRRRVTQTVLQ 99 (101)
Q Consensus 85 ~~P~~~~~VRa~~l~ 99 (101)
++|+.+|+||+..+.
T Consensus 142 ~~P~~~~~VR~~~~~ 156 (214)
T 1ln1_A 142 QLGERSGVIRVKQYK 156 (214)
T ss_dssp TBCCCTTSEEECCEE
T ss_pred CCCCCCCcEEEEEEE
Confidence 999999999997543
No 8
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=131.32 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=74.3
Q ss_pred Cceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeC---CCCCcceEEeeccccCCCCCCCCCCceEEEEE
Q psy6220 3 PPFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIW---PVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78 (101)
Q Consensus 3 ~~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvw---PasqRD~vflss~r~~~~~~~~~~~d~wiV~N 78 (101)
|..+|.. +|.++|.+||.++.++++||+|++| +++|| .+.+| |+++||+|.+++|+.... .++.|+|++
T Consensus 100 ~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-~ivY~-~~~p~~~~~v~~RDFV~lr~~r~~~~-----~G~~yvi~~ 172 (258)
T 3fo5_A 100 AAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-DAIYH-VTSPALGGHTKPQDFVILASRRKPCD-----NGDPYVIAL 172 (258)
T ss_dssp HHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-EEEEE-EEECCCTTCSSCEEEEEEEEEECCSS-----TTCCEEEEE
T ss_pred HHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-eEEEE-EecCCccCCCCCCEEEEEEEEEeccC-----CCCEEEEEE
Confidence 3344544 7999999999999999999999999 67776 46775 599999999999976431 125799999
Q ss_pred eCCCCCCCCCCCCcEEEEEE
Q psy6220 79 NSTDLDAYPVSRRRVTQTVL 98 (101)
Q Consensus 79 ~Sv~H~~~P~~~~~VRa~~l 98 (101)
.||+||++|+.+|+|||..+
T Consensus 173 ~SV~hp~~Pp~~g~VR~~~~ 192 (258)
T 3fo5_A 173 RSVTLPTHRETPEYRRGETL 192 (258)
T ss_dssp EEEECTTSCCCTTSEECCCS
T ss_pred EeccCCCCCCCCCCEEEEEc
Confidence 99999999999999999754
No 9
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=99.69 E-value=1.3e-17 Score=118.49 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=74.2
Q ss_pred ceeeee-cCcchhhhhHhhhhheeeeeccCCCceEEEEEeeeeCCCCCcceEEeeccccCCCCCCCCCCceEEEEEeCCC
Q psy6220 4 PFLFRS-NETTATLDACATLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTD 82 (101)
Q Consensus 4 ~~~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I~yqthKrvwPasqRD~vflss~r~~~~~~~~~~~d~wiV~N~Sv~ 82 (101)
.-+|.. .|.++|.+|+.++.++++||+ ++++.|+|+..|.+||+++||+|++++++..++ +. ++++.+.+
T Consensus 40 ~~v~~~l~D~~~~~~W~~~~~~~~vle~-~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~-------g~-~~i~~~~~ 110 (189)
T 3qsz_A 40 DDVVKVLRDANAFRQWMPDVAASELLKA-TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGD-------GA-ITVRVEAV 110 (189)
T ss_dssp HHHHHHHHCGGGGGGTSTTEEEEEEEEE-CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTT-------SC-EEEEEEEC
T ss_pred HHHHHHHHhHHHhhhHHHhcCEEEEEee-cCCceEEEEEeecCCCcCCcceEEEEEEEECCC-------Ce-EEEEEEcC
Confidence 334444 899999999999999999999 999999999999999999999999999998553 23 34556668
Q ss_pred CCCCCCCCCcEEEEEE
Q psy6220 83 LDAYPVSRRRVTQTVL 98 (101)
Q Consensus 83 H~~~P~~~~~VRa~~l 98 (101)
||.+|+.+|+||+..+
T Consensus 111 ~~~~P~~~~~VR~~~~ 126 (189)
T 3qsz_A 111 PDYLPLRKGKVRIPRA 126 (189)
T ss_dssp TTSSCCCTTSEECCCE
T ss_pred CCccCCCCCeEEeeEe
Confidence 9999999999999755
No 10
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=35.98 E-value=24 Score=22.72 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=20.0
Q ss_pred eeee-cCcchhhhhHhhhhheeeeeccCCCceE
Q psy6220 6 LFRS-NETTATLDACATLEKMTVAETISEDTIL 37 (101)
Q Consensus 6 ~~~~-~d~dyR~~WetT~e~~~vvE~Ls~nt~I 37 (101)
|||. -|..-|++|+..|-.. |++|.-|
T Consensus 16 lfr~PK~~~~Rk~W~~~l~c~-----lt~nSrI 43 (77)
T 3kde_C 16 LIHVPKCAIKRKLWEQSLGCS-----LGENSQI 43 (77)
T ss_dssp EEECCSSHHHHHHHHHHHTSC-----CCTTCEE
T ss_pred EEECCCCHHHHHHHHHHcCCC-----CCCcccH
Confidence 6777 8999999999998442 5555544
No 11
>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.23.3.1 PDB: 1mmo_G 1xmg_E 1xmf_E 1xmh_E 1xvb_E 1fyz_E 1fz0_E 1fz2_E 1fz3_E 1fz4_E 1fz5_E 1fz6_E 1fz7_E 1fz8_E 1fz9_E 1fzh_E 1fzi_E 1xu3_E 1xu5_E 1fz1_E ...
Probab=26.98 E-value=14 Score=26.83 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=19.2
Q ss_pred eeecCcchhhhhHhhhhheeeee
Q psy6220 7 FRSNETTATLDACATLEKMTVAE 29 (101)
Q Consensus 7 ~~~~d~dyR~~WetT~e~~~vvE 29 (101)
++|||...|.+|..-|.....++
T Consensus 1 ~~ih~np~R~eW~~KIa~L~tl~ 23 (162)
T 1mty_G 1 LGIHSNDTRDAWVNKIAHVNTLE 23 (162)
T ss_dssp CCSSSCHHHHHHHHHHHTCCSHH
T ss_pred CCcccCchHHHHHHHHHHHhhHH
Confidence 36899999999999988776654
No 12
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=26.15 E-value=75 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.1
Q ss_pred hhheeeeeccCCCceEEEEEeeeeCCCCC
Q psy6220 22 LEKMTVAETISEDTILFWQIHKSIWPVTQ 50 (101)
Q Consensus 22 ~e~~~vvE~Ls~nt~I~yqthKrvwPasq 50 (101)
+-..-+++..+++.+|.||...++-|..|
T Consensus 82 VrK~~VlAiVd~dg~ItYy~v~~~~~~~~ 110 (116)
T 2zyz_A 82 LSMPVVLALVSNDGTVTYYYVRKIRLPRN 110 (116)
T ss_dssp HTCCEEEEEECTTSCEEEEEEEECCCCCC
T ss_pred cceEEEEEEEcCCCCEEEEEEEEcccCcc
Confidence 34456888889999999999998876554
Done!