RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6220
(101 letters)
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport;
HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A*
2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A*
3h3s_A* 3h3t_A* 2z9z_A*
Length = 255
Score = 54.5 bits (130), Expect = 2e-10
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
T+E V ET++++ I+ +Q HK +WP +QRD ++ S + ++P ++ D WIV N S
Sbjct: 105 TIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDP-ETWIVCNFS 163
Query: 81 TDLDAYPVSRRRV 93
D D+ P++ R V
Sbjct: 164 VDHDSAPLNNRCV 176
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid
binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP:
d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Length = 214
Score = 43.6 bits (102), Expect = 1e-06
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 29 ETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPV 88
E + + K +P++ RD V+ + + + I +++ ST +
Sbjct: 90 EQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDM----EGRKIHVILARSTSMPQLGE 145
Query: 89 SRRRV 93
+
Sbjct: 146 RSGVI 150
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A
{Homo sapiens} SCOP: d.129.3.2
Length = 229
Score = 42.4 bits (99), Expect = 4e-06
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78
T+ + + + ++T++ + + V+ RD V + ++ ++
Sbjct: 98 TVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRI--------ERRRDRYLSSG 149
Query: 79 NSTDLDAYPVSRRRV 93
+T A P + + V
Sbjct: 150 IATSHSAKPPTHKYV 164
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle,
consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo
sapiens}
Length = 258
Score = 40.8 bits (95), Expect = 2e-05
Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSI-WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNN 79
+ + + + ED ++ ++ +D V + + D D +++
Sbjct: 119 HYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDP-----YVIALR 173
Query: 80 STDLDAYPVSRRRV 93
S L + +
Sbjct: 174 SVTLPTHRETPEYR 187
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein,
cholesterol binding, structural GENO structural genomics
consortium, SGC; 2.50A {Homo sapiens}
Length = 231
Score = 40.4 bits (94), Expect = 2e-05
Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 9/80 (11%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78
+ + ++I++ + S ++ RD V + + D
Sbjct: 100 NVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED-------GTISSNA 152
Query: 79 NSTDLDAYPVSRRRVTQTVL 98
+ P V
Sbjct: 153 THVEHPLCPPKPGFVRGFNH 172
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural
genomics consortium, SGC, start domain, cholester
transport, cholesterol; 3.40A {Homo sapiens}
Length = 221
Score = 39.3 bits (91), Expect = 4e-05
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSI--WPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78
++++ V + I +DT + ++ V RD V + + ++
Sbjct: 87 NVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCA--------KRRGSTCVLAG 138
Query: 79 NSTDLDAYPVSR 90
+TD P +
Sbjct: 139 MATDFGNMPEQK 150
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein,
lipid binding, helix swapping, struc genomics,
structural genomics consortium, SGC; 2.80A {Homo
sapiens} SCOP: d.129.3.2
Length = 237
Score = 37.4 bits (86), Expect = 2e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
+ V ET+ T ++ + S+ P RD V + + +V+ S
Sbjct: 104 DFVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLP------KGMCTLVSLS 157
Query: 81 TDLDAYPVS 89
+ + +
Sbjct: 158 VEHEEAQLL 166
>3qsz_A STAR-related lipid transfer protein; structural genomics,
PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Length = 189
Score = 33.4 bits (76), Expect = 0.006
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 21 TLEKMTVAETISEDTILFWQIHKSIWPVTQRDAVFWSHMTQVPDPSDRDAQNIWIVVNNS 80
+ + + + + + + WPV+ RD V+ + D I V
Sbjct: 58 DVAASELLKATDTEQYHYLD-NSAPWPVSNRDGVYHFTYEKAGDG--------AITVRVE 108
Query: 81 TDLDAYPVSRRRV 93
D P+ + +V
Sbjct: 109 AVPDYLPLRKGKV 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.069
Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 40/126 (31%)
Query: 4 PFLFRSNETTATLDACATLEKMTVAETISED----------TILFW-----QI---HKSI 45
P RS AT + + + +AET S + T+LF+ + S+
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 46 WPVTQRDAVFW-----SHMTQVPDPSDRDAQ------N--------IWIVVNNSTD---L 83
P D++ S M + + + Q N + I + N +
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 84 DAYPVS 89
P S
Sbjct: 380 SGPPQS 385
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 25.3 bits (56), Expect = 4.7
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 57 SHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPV 88
MTQ +N +N T L YP
Sbjct: 106 QRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPA 137
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 24.8 bits (55), Expect = 5.6
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 18/42 (42%)
Query: 14 ATLDACATLEKM------------------TVAETISEDTIL 37
A LD C LE+ + + +DTIL
Sbjct: 125 AVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTIL 166
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 24.7 bits (55), Expect = 6.0
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 18/42 (42%)
Query: 14 ATLDACATLEKM------------------TVAETISEDTIL 37
A L+ L + + + EDT L
Sbjct: 101 AVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFL 142
>2bdv_A Phage-related conserved hypothetical protein, BB2; alpha-beta
protein, structural genomics, PSI, protein struct
initiative; 2.20A {Bordetella bronchiseptica} SCOP:
d.303.1.1
Length = 231
Score = 24.7 bits (54), Expect = 6.0
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 63 PDPSDRDAQNIWIVVNNSTDLDAYPVSRR 91
P A+ I T YPV +
Sbjct: 180 PATPVARAKEILRAGLPETAFSWYPVRQE 208
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 24.7 bits (53), Expect = 6.1
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 52 DAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAYPVSRRRVT 94
VF+ + N + N + + + ++
Sbjct: 74 THVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 24.6 bits (53), Expect = 6.7
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 35 TILFWQIHKSIWPVTQ--RDAVFWSHMTQVPDPSDRDAQNIWIVVNNSTDLDAY 86
+ + + ++I P T +D + +T PD +I V++ST
Sbjct: 56 ALCIYVLMRTIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGL 109
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 24.7 bits (55), Expect = 6.9
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 18/42 (42%)
Query: 14 ATLDACATLEKM------------------TVAETISEDTIL 37
+ ++ L+K + + + +DTIL
Sbjct: 100 SVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTIL 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.128 0.396
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,425,263
Number of extensions: 67065
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 19
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)