RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6220
         (101 letters)



>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 214

 Score = 29.8 bits (66), Expect = 0.034
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 21  TLEKMTVAETISEDTILFWQIHKSIWP--VTQRDAVFWSHMTQVPDPSDRDAQNIWIVVN 78
           T+    + + + ++T++ + +        V+ RD V    +           ++ ++   
Sbjct: 84  TVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRI--------ERRRDRYLSSG 135

Query: 79  NSTDLDAYPVSRRRV 93
            +T   A P + + V
Sbjct: 136 IATSHSAKPPTHKYV 150


>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 121

 Score = 26.1 bits (57), Expect = 0.60
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 53  AVFWSHMTQVPDPSDRDAQN------IWIVVNNSTDLDAYPVSRRRVTQTVLQV 100
               SH +    PS+ D           I+V    D +++    R+  +  L+V
Sbjct: 67  GTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEV 120


>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of
          ku70 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 24.2 bits (53), Expect = 1.0
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 9  SNETTATLDACATLEKMTVAE 29
          S E   T  +  TL K TV  
Sbjct: 2  SEEELKTHISKGTLGKFTVPM 22


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 23.1 bits (50), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 80  STDLDAYPVSRRRVTQTVL 98
           S DLD +P+ R+ + Q  L
Sbjct: 437 SADLDQFPLGRKFLLQLGL 455


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.128    0.396 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,886
Number of extensions: 12756
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)