Query psy6222
Match_columns 863
No_of_seqs 285 out of 1562
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:50:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-149 7E-154 1334.7 38.4 593 13-702 152-783 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 5E-144 1E-148 1293.8 46.1 586 12-692 182-804 (821)
3 cd01377 MYSc_type_II Myosin mo 100.0 4E-136 8E-141 1217.6 43.1 565 11-660 89-693 (693)
4 KOG0162|consensus 100.0 1E-136 3E-141 1143.6 30.4 577 12-691 103-722 (1106)
5 cd01381 MYSc_type_VII Myosin m 100.0 2E-135 4E-140 1206.9 42.0 554 12-660 85-671 (671)
6 cd01384 MYSc_type_XI Myosin mo 100.0 3E-135 6E-140 1204.2 41.3 555 12-663 87-673 (674)
7 cd01380 MYSc_type_V Myosin mot 100.0 4E-135 9E-140 1208.6 41.4 570 12-660 85-691 (691)
8 KOG0164|consensus 100.0 1E-135 2E-140 1136.8 32.9 594 12-696 93-727 (1001)
9 cd01383 MYSc_type_VIII Myosin 100.0 2E-134 5E-139 1196.5 42.0 554 12-660 91-677 (677)
10 cd01387 MYSc_type_XV Myosin mo 100.0 2E-133 3E-138 1191.3 42.2 560 12-660 86-677 (677)
11 cd01378 MYSc_type_I Myosin mot 100.0 1E-133 3E-138 1192.7 40.9 550 12-660 85-674 (674)
12 cd01385 MYSc_type_IX Myosin mo 100.0 3E-133 7E-138 1190.8 43.7 563 12-661 93-689 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 1E-132 2E-137 1190.3 43.3 553 12-659 90-715 (717)
14 smart00242 MYSc Myosin. Large 100.0 1E-131 3E-136 1179.6 41.1 554 12-661 91-677 (677)
15 cd01379 MYSc_type_III Myosin m 100.0 2E-130 4E-135 1159.9 41.2 531 12-660 85-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 4E-130 8E-135 1170.3 42.4 562 12-660 85-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 1E-127 3E-132 1148.9 41.5 572 11-660 84-767 (767)
18 PF00063 Myosin_head: Myosin h 100.0 2E-123 4E-128 1122.0 33.5 564 12-649 84-689 (689)
19 KOG0161|consensus 100.0 2E-121 4E-126 1143.7 35.0 604 13-701 168-810 (1930)
20 KOG0163|consensus 100.0 2E-119 4E-124 1006.1 33.4 581 12-687 143-835 (1259)
21 KOG0160|consensus 100.0 4E-114 8E-119 1015.3 30.4 581 12-697 93-705 (862)
22 KOG4229|consensus 100.0 1.5E-78 3.1E-83 730.2 5.7 526 12-596 147-723 (1062)
23 PF00612 IQ: IQ calmodulin-bin 97.5 0.00012 2.6E-09 48.2 3.6 21 665-685 1-21 (21)
24 smart00015 IQ Short calmodulin 96.7 0.002 4.3E-08 44.7 3.3 22 664-685 2-23 (26)
25 KOG4229|consensus 95.5 0.0036 7.8E-08 78.6 0.2 155 521-695 794-949 (1062)
26 cd01363 Motor_domain Myosin an 90.2 0.17 3.7E-06 51.9 2.2 69 13-90 24-94 (186)
27 KOG4427|consensus 86.9 1.1 2.3E-05 54.1 5.9 27 660-686 25-51 (1096)
28 KOG0942|consensus 79.1 2.5 5.4E-05 52.2 5.0 38 664-701 28-65 (1001)
29 PF14604 SH3_9: Variant SH3 do 76.6 6.6 0.00014 31.4 5.3 47 798-845 3-49 (49)
30 cd00174 SH3 Src homology 3 dom 63.1 16 0.00034 28.4 4.8 46 799-845 7-53 (54)
31 smart00326 SH3 Src homology 3 56.8 19 0.00042 28.2 4.4 47 798-845 9-56 (58)
32 PF07653 SH3_2: Variant SH3 do 54.8 25 0.00054 28.5 4.7 48 798-845 6-53 (55)
33 PF12913 SH3_6: SH3 domain of 53.1 19 0.0004 29.8 3.6 38 799-836 12-49 (54)
34 PF15157 IQ-like: IQ-like 51.2 14 0.00031 33.1 2.7 20 664-683 46-65 (97)
35 COG4172 ABC-type uncharacteriz 48.7 3.2 7E-05 47.5 -1.9 44 6-49 29-72 (534)
36 KOG0377|consensus 48.2 23 0.0005 40.8 4.6 28 659-686 11-38 (631)
37 KOG1118|consensus 46.8 1.5E+02 0.0032 33.1 10.1 63 767-836 288-350 (366)
38 PTZ00014 myosin-A; Provisional 43.2 29 0.00062 44.0 4.8 16 666-681 801-816 (821)
39 KOG0160|consensus 38.8 39 0.00085 42.6 4.9 39 664-702 717-756 (862)
40 PF04023 FeoA: FeoA domain; I 34.5 58 0.0013 27.8 4.1 35 809-843 32-66 (74)
41 PF08763 Ca_chan_IQ: Voltage g 34.5 45 0.00098 25.1 2.8 18 667-684 11-28 (35)
42 PRK02290 3-dehydroquinate synt 32.4 89 0.0019 35.4 6.0 87 769-862 214-337 (344)
43 KOG1419|consensus 30.7 51 0.0011 39.3 3.9 29 654-682 325-357 (654)
44 PF11535 Calci_bind_CcbP: Calc 29.1 30 0.00065 32.6 1.4 39 807-845 43-86 (106)
45 PF07499 RuvA_C: RuvA, C-termi 28.4 61 0.0013 25.7 2.9 27 138-164 3-29 (47)
46 PF08667 BetR: BetR domain; I 27.6 1E+02 0.0022 30.8 4.8 67 134-209 3-69 (147)
47 COG0444 DppD ABC-type dipeptid 24.9 8.2 0.00018 43.0 -3.6 34 6-39 24-57 (316)
48 PF00018 SH3_1: SH3 domain; I 23.8 1.7E+02 0.0037 22.8 4.7 36 798-834 4-39 (48)
49 KOG4078|consensus 23.7 53 0.0012 32.2 2.0 52 41-101 37-93 (173)
50 PRK09752 adhesin; Provisional 21.0 78 0.0017 41.2 3.2 9 642-650 849-857 (1250)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-149 Score=1334.73 Aligned_cols=593 Identities=28% Similarity=0.469 Sum_probs=530.5
Q ss_pred cCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE-------
Q psy6222 13 EKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------- 85 (863)
Q Consensus 13 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------- 85 (863)
+||++|+||||+|||++|+.+++|.++.+.++....+.||++|+++|||||| ||||+|+|||||||||||+.
T Consensus 152 NQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEA-FGNAkTvRNdNSSRFGKyikI~Fd~~g 230 (1463)
T COG5022 152 NQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEA-FGNAKTVRNDNSSRFGKYIKIEFDENG 230 (1463)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHH-hccccccccCCcccccceEEEEECCCC
Confidence 7999999999999999999999999998888887888999999999999999 99999999999999999974
Q ss_pred ---------eeecCceeeeehh----hhhHHHHHH--------HcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHHH
Q psy6222 86 ---------ALWERHLIVSVVI----ILVFFSVTV--------KLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWKA 143 (863)
Q Consensus 86 ---------~lleksrvv~~~~----fHIFYqL~~--------~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~~ 143 (863)
|||||+|||+|.. |||||||.+ .++++ +|++|.||++| |..++++||+++|+.|+.
T Consensus 231 ~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~--~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~ 308 (1463)
T COG5022 231 EICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQ--NPKDYIYLSQGGCDKIDGIDDAKEFKITLD 308 (1463)
T ss_pred ceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhcc--ChHhhHhHhhcCCCcCCCcccHHHHHHHHH
Confidence 9999999999988 999999943 34444 69999999998 889999999999999999
Q ss_pred HhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEecC
Q psy6222 144 CLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNAR 220 (863)
Q Consensus 144 Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~~ 220 (863)
||+++||+. .+||+|||||||||||+|... ....+.+.+.+.++.+|+|||||++.|.++|+.|.+.++
T Consensus 309 AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~--------r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~ 380 (1463)
T COG5022 309 ALKTIGIDEEEQDQIFKILAAILHIGNIEFKED--------RNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTG 380 (1463)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhhcceeeeec--------ccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcC
Confidence 999999984 679999999999999999984 233566788899999999999999999999999999999
Q ss_pred CeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCch
Q psy6222 221 GQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSK 300 (863)
Q Consensus 221 ~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~ 300 (863)
+|.|.++++.+||..+||+|||+||++||+|||++||.++-- .
T Consensus 381 ~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~--~----------------------------------- 423 (1463)
T COG5022 381 GEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDH--S----------------------------------- 423 (1463)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--c-----------------------------------
Confidence 999999999999999999999999999999999999984311 0
Q ss_pred hhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCchh
Q psy6222 301 SMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPC 380 (863)
Q Consensus 301 s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ 380 (863)
....+|||||||||||+|+.|||||||||||||||||+||+|||+.|||+|.+|||+|+ .|+|.||++|
T Consensus 424 ----------~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~-~Idy~DnQ~~ 492 (1463)
T COG5022 424 ----------AAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWS-FIDYFDNQPC 492 (1463)
T ss_pred ----------cccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccccCcch
Confidence 01246999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred hhhhhcc-cccccccchhhhcC-CCChhHHHHHHHhHhc-CCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCC
Q psy6222 381 IDLISSL-RTGLLSMLDVECSL-RGTAETYLGKVKAQHR-HNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVV 457 (863)
Q Consensus 381 ldLi~~~-~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~-~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l 457 (863)
|||||++ |.|||++|||||.+ .|+|++|.+||...+. .+...+++.......|+|+||||+|+|+++||++||+|++
T Consensus 493 IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l 572 (1463)
T COG5022 493 IDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPL 572 (1463)
T ss_pred hHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchh
Confidence 9999984 78999999999998 7999999999998876 4444555544556799999999999999999999999999
Q ss_pred cHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q psy6222 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHAR 537 (863)
Q Consensus 458 ~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ 537 (863)
++++++|+..|++ .|+..||...... . .++.+.|+++.|+.||..||.+|++|+
T Consensus 573 ~~~ll~Ll~~StN--e~vs~Lf~~~~~~------~------------------~K~~~pT~gs~~K~sl~~Lm~tl~sTq 626 (1463)
T COG5022 573 NDDLLELLKASTN--EFVSTLFDDEENI------E------------------SKGRFPTLGSRFKESLNSLMSTLNSTQ 626 (1463)
T ss_pred hHHHHHHHhhccc--hHHHHhhhhhhhc------c------------------ccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999874 5699999743210 0 112346999999999999999999999
Q ss_pred CeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccc---cccchhHHHHH
Q psy6222 538 PHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLR---RTEDRLTEDCL 614 (863)
Q Consensus 538 phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~---~~~~~~~e~~~ 614 (863)
||||||||||.+|+|..||...|+.||||+||+|+|||+|+|||.|++|+||+.||++|.|..... .+.+..+++|+
T Consensus 627 phyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~ 706 (1463)
T COG5022 627 PHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVK 706 (1463)
T ss_pred CceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999865421 23355788999
Q ss_pred HHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHh
Q psy6222 615 LILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPL-LRRNLEM 693 (863)
Q Consensus 615 ~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~-~r~~~~i 693 (863)
.||..+..+ ...|++|+||||||++++..||++|+..++.+++.||++|||++.||+|.+ +++...+
T Consensus 707 ~IL~~~~id------------~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~ 774 (1463)
T COG5022 707 SILEELVID------------SSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKI 774 (1463)
T ss_pred HHHHhhcCC------------hhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876532 467999999999999999999999999999999999999999999999987 4566667
Q ss_pred hhccCCCCC
Q psy6222 694 KSGNTGGTS 702 (863)
Q Consensus 694 ~~~~~~~~~ 702 (863)
+..+.....
T Consensus 775 ~~~~~~~~~ 783 (1463)
T COG5022 775 QVIQHGFRL 783 (1463)
T ss_pred HHHhcccch
Confidence 766655443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.5e-144 Score=1293.81 Aligned_cols=586 Identities=24% Similarity=0.354 Sum_probs=519.5
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|.+..+... ....|+++|+++|||||| ||||||+|||||||||||+.
T Consensus 182 ~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEA-FGNAKT~rNdNSSRFGKfi~i~F~~~ 258 (821)
T PTZ00014 182 KSQTIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEA-FGNAKTIRNNNSSRFGRFMQLQLGEE 258 (821)
T ss_pred CCceEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHH-hhccCcCCCCCcCcceeEEEEEEcCC
Confidence 589999999999999999999999987654322 235799999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCccCCCHHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKA 143 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~~~~~dDa~~F~~l~~ 143 (863)
|||||+||+.|.. ||||||| +++|+|. ++++|+||++++..++++||+++|++++.
T Consensus 259 g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~dD~~~f~~~~~ 336 (821)
T PTZ00014 259 GGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLK--SLEEYKYINPKCLDVPGIDDVKDFEEVME 336 (821)
T ss_pred CcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCC--ChHhccccCCCCccCCCCchHHHHHHHHH
Confidence 9999999999988 9999999 4578886 68999999999988999999999999999
Q ss_pred HhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEec--ChhhHHHhHhcCCCCHHHHHhhHceeEEe
Q psy6222 144 CLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVN--GESTLNSVASLLGVPSASLFRGITTRTHN 218 (863)
Q Consensus 144 Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~--~~~~l~~aA~LLGv~~~~L~~aLt~r~~~ 218 (863)
||++|||+. .+||+|||||||||||+|.+.+.. +..+.+.+. +.+.++.||.||||+.++|.++|+.|++.
T Consensus 337 A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~----~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~ 412 (821)
T PTZ00014 337 SFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEG----GLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTY 412 (821)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccC----CCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEE
Confidence 999999984 569999999999999999875321 112234444 45589999999999999999999999999
Q ss_pred cCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCC
Q psy6222 219 ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKS 298 (863)
Q Consensus 219 ~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~ 298 (863)
++++.+++++++++|..+||||||+||+|||+|||++||.++...
T Consensus 413 ~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~----------------------------------- 457 (821)
T PTZ00014 413 AGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPP----------------------------------- 457 (821)
T ss_pred eCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------------------
Confidence 999999999999999999999999999999999999999854320
Q ss_pred chhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCc
Q psy6222 299 SKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNV 378 (863)
Q Consensus 299 s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~ 378 (863)
.....+||||||||||+|+.||||||||||||||||++|+++||+.||++|++|||+| ..|+|.||+
T Consensus 458 ------------~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~-~~i~f~dN~ 524 (821)
T PTZ00014 458 ------------GGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGIST-EELEYTSNE 524 (821)
T ss_pred ------------cccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCCCCCCcH
Confidence 0123589999999999999999999999999999999999999999999999999999 499999999
Q ss_pred hhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCC
Q psy6222 379 PCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVV 457 (863)
Q Consensus 379 ~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l 457 (863)
+|||||+++|.|||++|||||++ ++||++|++||..++++|+.|..|+......|+|+||||+|+|+++||++||+|.|
T Consensus 525 ~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l 604 (821)
T PTZ00014 525 SVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVL 604 (821)
T ss_pred HHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccc
Confidence 99999999999999999999998 79999999999999999998887765456799999999999999999999999999
Q ss_pred cHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q psy6222 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHAR 537 (863)
Q Consensus 458 ~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ 537 (863)
+++++++|++|+ +.|++.||..... .++ ...+..||+++|+.||+.||++|++|+
T Consensus 605 ~~~~~~ll~~S~--n~~i~~lf~~~~~--------~~~---------------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ 659 (821)
T PTZ00014 605 RPELVEVVKASP--NPLVRDLFEGVEV--------EKG---------------KLAKGQLIGSQFLNQLDSLMSLINSTE 659 (821)
T ss_pred hHHHHHHHHhCc--cHHHHHHhccccc--------ccc---------------cccCCCcHHHHHHHHHHHHHHHHhccC
Confidence 999999999987 4579999964210 000 011236899999999999999999999
Q ss_pred CeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHH
Q psy6222 538 PHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLIL 617 (863)
Q Consensus 538 phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL 617 (863)
||||||||||+.++|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|.+.... ....+.++.|+.||
T Consensus 660 phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~-~~~~d~k~~~~~il 738 (821)
T PTZ00014 660 PHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSN-DSSLDPKEKAEKLL 738 (821)
T ss_pred CeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCccccc-CCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875432 22235688999999
Q ss_pred HHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6222 618 QCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRH---RAAVLIQAVWRGTYARKRWPLLRRNLE 692 (863)
Q Consensus 618 ~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~~~---~~a~~IQa~~Rg~l~Rk~~~~~r~~~~ 692 (863)
+.+.. ...+|++|+||||||++++..||++|++++. .+++.||++||||++|++|.++++.+.
T Consensus 739 ~~~~l------------~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~ 804 (821)
T PTZ00014 739 ERSGL------------PKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLV 804 (821)
T ss_pred HHcCC------------CcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88652 2368999999999999999999999887754 688999999999999999999876543
No 3
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.8e-136 Score=1217.65 Aligned_cols=565 Identities=27% Similarity=0.433 Sum_probs=496.4
Q ss_pred hccCCCCcccccCCCCCCCCCCCceeecCCCCcccc------cccchhhhhhccCcchhccccccccccccCCccceEEE
Q psy6222 11 LNEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVS------CSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFK 84 (863)
Q Consensus 11 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~ 84 (863)
-.+||++|+||||+|||++++-++.|....+..... ....|+++|+++|||||| ||||||+||+||||||||+
T Consensus 89 ~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEA-FGNAkT~rN~NSSRFGK~i 167 (693)
T cd01377 89 RENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEA-FGNAKTVRNDNSSRFGKFI 167 (693)
T ss_pred CCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHH-hhccccCCCCCccccceeE
Confidence 368999999999999999999999999876654332 345899999999999999 9999999999999999997
Q ss_pred E----------------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCccCCCHHHHH
Q psy6222 85 V----------------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTRQDDVEDAA 136 (863)
Q Consensus 85 ~----------------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~~~~~dDa~ 136 (863)
. |||||+||+.+.. ||||||| +++|+|+. .+++|+||++++...++++|++
T Consensus 168 ~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~-~~~~y~yL~~~~~~~~~~~d~~ 246 (693)
T cd01377 168 RIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTG-NPNDYRYLSQGELTIPGVDDAE 246 (693)
T ss_pred EEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCC-chhcCeeeCCCCccCCCCcHHH
Confidence 4 9999999999988 9999999 56688875 3589999999988889999999
Q ss_pred HHHHHHHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHc
Q psy6222 137 RFQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGIT 213 (863)
Q Consensus 137 ~F~~l~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt 213 (863)
+|++++.||+.|||+. .+||+|||||||||||+|.+.. +.+.+.+.+.+.++.||.||||+.++|.++|+
T Consensus 247 ~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~-------~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 247 EFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQ-------REEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecC-------CCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 9999999999999994 5799999999999999999852 23356788899999999999999999999999
Q ss_pred eeEEecCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhcccccccc
Q psy6222 214 TRTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGT 293 (863)
Q Consensus 214 ~r~~~~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~ 293 (863)
+|++.++++.+++++++++|..+||+|||+||++||+|||++||+++...
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~------------------------------ 369 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK------------------------------ 369 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------------------------
Confidence 99999999999999999999999999999999999999999999855320
Q ss_pred CCCCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCccccccc
Q psy6222 294 AGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVD 373 (863)
Q Consensus 294 ~~~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~ 373 (863)
.....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|++|||+| ..|+
T Consensus 370 -----------------~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~-~~i~ 431 (693)
T cd01377 370 -----------------QQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEW-TFID 431 (693)
T ss_pred -----------------CCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccc
Confidence 0124589999999999999999999999999999999999999999999999999999 4899
Q ss_pred c-cCCchhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCC-CCCCCCCCCceEEEeeeeeeeecchhhh
Q psy6222 374 Y-VDNVPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRL-FDPKPVDARCFTIQHFAGRVLYDTSDFL 450 (863)
Q Consensus 374 ~-~DN~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~-~~~k~~~~~~F~I~HyAG~V~Y~v~gfl 450 (863)
| .||++|||||+++|.|||++|||||++ +|||++|++||..+|++++.+ ..++......|+|+||||+|+|+++||+
T Consensus 432 ~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl 511 (693)
T cd01377 432 FGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWL 511 (693)
T ss_pred cCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHH
Confidence 9 599999999999999999999999998 799999999999999888776 2333345679999999999999999999
Q ss_pred hhcCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHH
Q psy6222 451 ETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLL 530 (863)
Q Consensus 451 eKNrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm 530 (863)
+||+|.++++++++|++|++ .+++.||......... .. + +.. .........||+.+|+.||+.||
T Consensus 512 eKN~D~l~~~~~~ll~~S~~--~~i~~lf~~~~~~~~~-~~---~------~~~---~~~~~~~~~tv~~~F~~qL~~L~ 576 (693)
T cd01377 512 EKNKDPLNDNVVGLLKKSSD--KLVAELFKDYAEASGD-GG---G------GGG---KKKKGGSFRTVSQLYKEQLNKLM 576 (693)
T ss_pred HhccccccHHHHHHHHhCch--HHHHHHhhhhcccccc-cc---c------ccC---CCCcCCccccHHHHHHHHHHHHH
Confidence 99999999999999999874 5799999764321100 00 0 000 00112234699999999999999
Q ss_pred HHHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhH
Q psy6222 531 RSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLT 610 (863)
Q Consensus 531 ~~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~ 610 (863)
++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+|+|||+|++|.+|++||++|+|.... ....+.+
T Consensus 577 ~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~~~~~-~~~~d~k 655 (693)
T cd01377 577 TTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAPNAIP-KGFMDSK 655 (693)
T ss_pred HHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCccccc-ccCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986532 2234567
Q ss_pred HHHHHHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 611 EDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 611 e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
+.|+.||+.+.. ...+|++|+||||||+++++.||++|
T Consensus 656 ~~~~~iL~~~~~------------~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 656 KASEKILKSLEL------------DPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHHHHHhcCC------------CcccEEecCCeEeECccHHHHHhhcC
Confidence 899999987642 23689999999999999999999986
No 4
>KOG0162|consensus
Probab=100.00 E-value=1.2e-136 Score=1143.55 Aligned_cols=577 Identities=26% Similarity=0.437 Sum_probs=519.6
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
-+||++|+||||+|||++++.+++|..+.+ +.+..-..|+|+||++||+||| ||||+|+|||||||||||..
T Consensus 103 EnQCVIISGESGAGKT~aAK~IM~YIs~vS-~~g~kvq~vkdiiL~sNPLLEa-FG~akTvRNnNSSR~GKY~Ei~Fs~g 180 (1106)
T KOG0162|consen 103 ENQCVIISGESGAGKTVAAKRIMQYISRVS-GGGEKVQHVKDIILQSNPLLEA-FGNAKTVRNNNSSRFGKYLEIQFSRG 180 (1106)
T ss_pred ccceEEEecCCCCCchHHHHHHHHHHHHhc-cCCcchhhhhhHhhccchHHHH-hcchhhhccCCcccccceEEEEecCC
Confidence 479999999999999999999999998877 4444555999999999999999 99999999999999999964
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCC-CCccCCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQS-GDTRQDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~q-g~~~~~~~dDa~~F~~l~ 142 (863)
|||||+|||.|.. ||||||| +..+++. .|+.|.||+. ||..+|++||..+|++++
T Consensus 181 geP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~--~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl 258 (1106)
T KOG0162|consen 181 GEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQ--EPEYYVYLNASGCYSVDDIDDRKDFQETL 258 (1106)
T ss_pred CCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcC--CchheeeeccccceeccccchHHHHHHHH
Confidence 9999999999988 9999999 4457777 5999999986 578899999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+++|+.+ .+||++||+|||||||.|.+. ++ -+.|.+.+.++..|+||||+...|.+.||.|.|.+
T Consensus 259 ~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee-------~~--~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s 329 (1106)
T KOG0162|consen 259 HAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE-------GN--YAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMES 329 (1106)
T ss_pred HHheeccCChHHHHHHHHHHHHHHhccceeEEee-------CC--cceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999999983 569999999999999999985 22 35678889999999999999999999999998764
Q ss_pred ----CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCC
Q psy6222 220 ----RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAG 295 (863)
Q Consensus 220 ----~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~ 295 (863)
+.+++..+++++||...||||||+||.|||+|||++||.++... ++
T Consensus 330 ~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~-------~~----------------------- 379 (1106)
T KOG0162|consen 330 KWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAF-------KG----------------------- 379 (1106)
T ss_pred cccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----------------------
Confidence 45899999999999999999999999999999999999865320 00
Q ss_pred CCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCccccccccc
Q psy6222 296 SKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYV 375 (863)
Q Consensus 296 ~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~ 375 (863)
..+.+||||||||||+|++||||||||||.||||||.|++.+++.|||+|.+|||.| ++|+|.
T Consensus 380 ----------------~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~W-TpIkYF 442 (1106)
T KOG0162|consen 380 ----------------SEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKW-TPIKYF 442 (1106)
T ss_pred ----------------ccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc-cchhhc
Confidence 023589999999999999999999999999999999999999999999999999999 799999
Q ss_pred CCchhhhhhhcc-cccccccchhhhcC-----CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhh
Q psy6222 376 DNVPCIDLISSL-RTGLLSMLDVECSL-----RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDF 449 (863)
Q Consensus 376 DN~~~ldLi~~~-~~Gll~lLDeE~~~-----~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gf 449 (863)
||.-++||||.+ |.||+++|||.|.. .|-|++|+++|+..+++|++|... ...|+|+||||+|+||++||
T Consensus 443 nNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~----s~~FvIkHYAGdVtYdi~G~ 518 (1106)
T KOG0162|consen 443 NNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESR----SNGFVIKHYAGDVTYDIDGF 518 (1106)
T ss_pred CCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccc----cCceEEEEeccceeeecccc
Confidence 999999999975 78999999999975 357899999999999999976432 36899999999999999999
Q ss_pred hhhcCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHH
Q psy6222 450 LETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNL 529 (863)
Q Consensus 450 leKNrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~L 529 (863)
.+||||.|..|+++|++.|. +.|++.||+..+.+- + ++..+|.+.++++|.++|
T Consensus 519 ~drNrD~L~~DlieLm~ts~--~~Fl~slFPe~v~~d----------s--------------krRP~Tag~kIkkqANdL 572 (1106)
T KOG0162|consen 519 CDRNRDVLFKDLIELMQTSE--NPFLKSLFPENVDAD----------S--------------KRRPPTAGDKIKKQANDL 572 (1106)
T ss_pred cccchhHHHHHHHHHHhccc--hHHHHHhCchhhccc----------c--------------cCCCCCchhhHHhhHHHH
Confidence 99999999999999998876 567999998754210 1 122357788999999999
Q ss_pred HHHHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchh
Q psy6222 530 LRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRL 609 (863)
Q Consensus 530 m~~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~ 609 (863)
+++|.+|+||||||||||..|+|+.||...|.+|+.|+|+-|.|||||+||.+|..|+.|++||.+|.|..+ +.|..+.
T Consensus 573 VeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~-~twqGD~ 651 (1106)
T KOG0162|consen 573 VETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW-PTWQGDE 651 (1106)
T ss_pred HHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc-cccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999885 5788888
Q ss_pred HHHHHHHHHHhHhhcccCcccccccCccceEeeceEEEec-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6222 610 TEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLS-EGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLR 688 (863)
Q Consensus 610 ~e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr-~~~~~~LE~~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~~r 688 (863)
+++|+.||+.... ++++||+|.||||+| ++.+..||++|++++...|..||++||.|++||+|.+||
T Consensus 652 ~~av~~il~~~~m------------~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 652 KQAVEHILRDVNM------------PSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHhcCC------------ChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987652 357899999999998 789999999999999999999999999999999999999
Q ss_pred HHH
Q psy6222 689 RNL 691 (863)
Q Consensus 689 ~~~ 691 (863)
.+.
T Consensus 720 ee~ 722 (1106)
T KOG0162|consen 720 EEA 722 (1106)
T ss_pred HHH
Confidence 543
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.7e-135 Score=1206.85 Aligned_cols=554 Identities=29% Similarity=0.479 Sum_probs=493.6
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.. .+.|+++|+++|||||| ||||+|++||||||||||+.
T Consensus 85 ~~QsIiisGESGaGKTes~K~i~~yLa~~s~~----~~~i~~~il~snpiLEA-FGNAkT~~N~NSSRFGK~~~l~F~~~ 159 (671)
T cd01381 85 KNQCIIISGESGAGKTESTKLILQYLAAISGK----HSWIEQQILEANPILEA-FGNAKTIRNDNSSRFGKYIDIHFNKR 159 (671)
T ss_pred CCceEEEEcCCCCCeehHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHHH-hhccccCCCCCccccceeEEEEECCC
Confidence 47999999999999999999999998765432 34799999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. ||||||| +++++|. ++.+|+||+++ +...+++||+++|+.++
T Consensus 160 g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~dD~~~f~~~~ 237 (671)
T cd01381 160 GAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLG--EASDYHYLAQGGCITCEGRDDAKDFADIR 237 (671)
T ss_pred CcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCC--ChhhceeecCCCCccCCCccHHHHHHHHH
Confidence 8999999999888 9999999 4567887 47999999987 56778999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+.|||+. .+||+|||||||||||+|.+... ++.+.+.+.+.+.++.||.||||+.++|.++||+|++.+
T Consensus 238 ~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~-----~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 238 SAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEV-----DNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccC-----CCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 9999999995 56999999999999999997632 223467788999999999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+|+.+++++++++|..+||||||+||+|||+|||++||+++... .
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~---------~-------------------------- 357 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKP---------V-------------------------- 357 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------c--------------------------
Confidence 99999999999999999999999999999999999999854310 0
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCch
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVP 379 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~ 379 (863)
.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+| .+|+|.||++
T Consensus 358 -----------~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~-~~i~f~dN~~ 425 (671)
T cd01381 358 -----------QQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINW-QHIEFVDNQD 425 (671)
T ss_pred -----------ccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CccCccCcHH
Confidence 0123589999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred hhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCc
Q psy6222 380 CIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458 (863)
Q Consensus 380 ~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~ 458 (863)
|||||+++|.|||++|||||++ +|+|++|++|++.+|+.++.+..|+......|+|+||||+|+|+++||++||+|.++
T Consensus 426 ~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~ 505 (671)
T cd01381 426 ALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFS 505 (671)
T ss_pred HHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhh
Confidence 9999999999999999999998 899999999999999999988877665668999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCC
Q psy6222 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARP 538 (863)
Q Consensus 459 ~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~p 538 (863)
++++++|+.|+ +.+++.+|...... +.+ ..++..||+++|+.||+.||++|++|+|
T Consensus 506 ~~~~~ll~~S~--n~~i~~lf~~~~~~-------~~~---------------~~~k~~tv~~~fk~qL~~L~~~L~~t~p 561 (671)
T cd01381 506 GDLSQLVQSSK--NKFLKQIFQADVEM-------GAE---------------TRKKKPTLSSQFRRSLDLLMRTLSSCQP 561 (671)
T ss_pred HHHHHHHHhCh--HHHHHHHhcccccc-------ccc---------------ccccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999887 45799999754210 000 1123469999999999999999999999
Q ss_pred eeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHH
Q psy6222 539 HFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQ 618 (863)
Q Consensus 539 hFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~ 618 (863)
|||||||||..++|+.||..+|++||||+||||+|||+|.|||+|++|.+|+.||++|++.........+.++.|+.|++
T Consensus 562 hfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~ 641 (671)
T cd01381 562 FFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICE 641 (671)
T ss_pred eEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865432222345677888887
Q ss_pred HhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 619 CVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
.+.. ...+|++|+||||||++++..||++|
T Consensus 642 ~~~~------------~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 642 AVLL------------ADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HcCC------------CcccEEeccceEEECcCHHHHHhhcC
Confidence 7542 23689999999999999999999976
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.7e-135 Score=1204.15 Aligned_cols=555 Identities=28% Similarity=0.461 Sum_probs=492.3
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.........|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 87 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEA-FGNAkT~~N~NSSRFGK~~~l~f~~~ 165 (674)
T cd01384 87 KSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEA-FGNAKTVRNNNSSRFGKFVEIQFDDY 165 (674)
T ss_pred CCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHH-hhCCCCCCCCCcchhheeEEEEECCC
Confidence 47999999999999999999999999887655544456899999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH-------HHHcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV-------TVKLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWKA 143 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL-------~~~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~~ 143 (863)
|||||+||+.+.. ||||||| +++|+|. ++++|+||+++ +...++++|+++|++++.
T Consensus 166 g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~ 243 (674)
T cd01384 166 GRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLG--DPKEFHYLNQSNCFELDGVDDAEEYLATRR 243 (674)
T ss_pred CcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCC--ChHhCccccCCCCccccccchHHHHHHHHH
Confidence 9999999998888 9999999 4567886 68999999987 556789999999999999
Q ss_pred HhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEecC
Q psy6222 144 CLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNAR 220 (863)
Q Consensus 144 Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~~ 220 (863)
||+.|||+. .+||+|||||||||||+|.+.... +........+.+.++.||.||||+.++|.++|++|++.++
T Consensus 244 al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~----~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 244 AMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEI----DSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCC----CcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999994 479999999999999999875210 1111122234588999999999999999999999999999
Q ss_pred CeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCch
Q psy6222 221 GQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSK 300 (863)
Q Consensus 221 ~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~ 300 (863)
++.+++++++++|..+||+|||+||++||+|||.+||+++.. +
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~---------~---------------------------- 362 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQ---------D---------------------------- 362 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------C----------------------------
Confidence 999999999999999999999999999999999999985432 0
Q ss_pred hhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCchh
Q psy6222 301 SMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPC 380 (863)
Q Consensus 301 s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ 380 (863)
.....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|++|||+| ..|+|.||++|
T Consensus 363 ----------~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~-~~i~~~DN~~~ 431 (674)
T cd01384 363 ----------PDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDW-SYIEFVDNQDV 431 (674)
T ss_pred ----------CCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccCCChHHH
Confidence 0123589999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred hhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCcH
Q psy6222 381 IDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459 (863)
Q Consensus 381 ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~ 459 (863)
||||+++|.|||++|||||++ ++||++|++||...+++++.+..|+. .+.+|+|+||||+|+|+++||++||+|.+++
T Consensus 432 ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~-~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~ 510 (674)
T cd01384 432 LDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKL-SRTAFTIDHYAGDVTYQTDQFLDKNKDYVVA 510 (674)
T ss_pred HHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCC-CCCeeEEEEecceeeecCCCHHHhcCCcccH
Confidence 999999999999999999998 79999999999999999998877764 4579999999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCe
Q psy6222 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPH 539 (863)
Q Consensus 460 dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ph 539 (863)
+++++|++|++ .+++.||...... + ....+..||+.+|+.||+.||++|++|+||
T Consensus 511 ~~~~ll~~S~n--~~i~~lf~~~~~~-----------------~------~~~~k~~tv~~~fk~~L~~L~~~L~~t~~h 565 (674)
T cd01384 511 EHQALLNASNC--SFVAGLFPPLPEE-----------------T------SKSSKFSSIGSRFKQQLQSLMETLSTTEPH 565 (674)
T ss_pred HHHHHHHhCch--HHHHHHhcccccc-----------------c------ccccccccHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999874 5789998653110 0 011234689999999999999999999999
Q ss_pred eEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHHH
Q psy6222 540 FVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQC 619 (863)
Q Consensus 540 FIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~~ 619 (863)
||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..+.++.|+.||+.
T Consensus 566 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~--~~~~~~~~~~il~~ 643 (674)
T cd01384 566 YIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKG--SSDDKAACKKILDK 643 (674)
T ss_pred EEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccC--CCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999865422 22457889999976
Q ss_pred hHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHH
Q psy6222 620 VEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDT 663 (863)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~ 663 (863)
+. ..+|++|+||||||++++..||++|++.
T Consensus 644 ~~--------------~~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 644 MG--------------LKGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred CC--------------CCCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 53 1479999999999999999999999875
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.9e-135 Score=1208.64 Aligned_cols=570 Identities=29% Similarity=0.471 Sum_probs=492.3
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCccc--ccccchhhhhhccCcchhccccccccccccCCccceEEEE----
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAV--SCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV---- 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~---- 85 (863)
.+||++|+||||+|||++++-++.|....+.+.. ...+.|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 85 ~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEA-FGNAkT~~N~NSSRFGK~~~l~f~ 163 (691)
T cd01380 85 KNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEA-FGNAKTTRNDNSSRFGKYIQILFD 163 (691)
T ss_pred CCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHH-hhcCCCCCCCCccccceEEEEEEC
Confidence 5799999999999999999999999877654432 1245899999999999999 99999999999999999974
Q ss_pred ------------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCC-ccCCCHHHHHHHHH
Q psy6222 86 ------------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGD-TRQDDVEDAARFQA 140 (863)
Q Consensus 86 ------------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~-~~~~~~dDa~~F~~ 140 (863)
|||||+||+.+.. ||||||| +++|+|+ ++++|+||++|. ...++++|+++|++
T Consensus 164 ~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~--~~~~y~yl~~~~~~~~~~~~d~~~f~~ 241 (691)
T cd01380 164 KRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLG--HADKFNYLNQGGAPTIEGVDDAEDFNA 241 (691)
T ss_pred CCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCC--CHHHCccccCCCCccCCCCChHHHHHH
Confidence 8999999999887 9999999 4567887 479999999874 56789999999999
Q ss_pred HHHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEE
Q psy6222 141 WKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTH 217 (863)
Q Consensus 141 l~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~ 217 (863)
|+.||+.|||+. .+||+|||||||||||+|.+.+. .......+.+.++.||.||||+.++|.++|+.|++
T Consensus 242 ~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-------~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 314 (691)
T cd01380 242 TVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-------DSSSISPKDENLQIACELLGVDASDLRKWLVKRQI 314 (691)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-------ccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEE
Confidence 999999999994 57999999999999999998521 11133446678999999999999999999999999
Q ss_pred ecCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCC
Q psy6222 218 NARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSK 297 (863)
Q Consensus 218 ~~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~ 297 (863)
.++++.+.+++++++|..+||+|||+||+|||+|||++||.++... +.
T Consensus 315 ~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~--------~~------------------------ 362 (691)
T cd01380 315 VTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTG--------EV------------------------ 362 (691)
T ss_pred EECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--------cc------------------------
Confidence 9999999999999999999999999999999999999999865320 00
Q ss_pred CchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCC
Q psy6222 298 SSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDN 377 (863)
Q Consensus 298 ~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN 377 (863)
......+||||||||||+|+.|||||||||||||+||++|++++|+.||++|++|||+| ..|+|.||
T Consensus 363 ------------~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~-~~i~f~DN 429 (691)
T cd01380 363 ------------KKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEW-TFIDFYDN 429 (691)
T ss_pred ------------cCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC-ccccCCCC
Confidence 00124589999999999999999999999999999999999999999999999999999 59999999
Q ss_pred chhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhc--CCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcC
Q psy6222 378 VPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHR--HNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNK 454 (863)
Q Consensus 378 ~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~--~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNr 454 (863)
++|||||++ |.|||++|||||++ +|||++|++||+.+|+ .++.+..|+. ...+|+|+||||+|+|+++||++||+
T Consensus 430 ~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~-~~~~F~I~HyAG~V~Y~v~gfleKNr 507 (691)
T cd01380 430 QPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKPRF-GQTSFTVKHFADDVEYDVDGFLEKNR 507 (691)
T ss_pred HHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCCCC-CCCeeEEEEccCCcccccccHHHhcc
Confidence 999999998 68999999999999 7999999999999997 7887777654 45799999999999999999999999
Q ss_pred CCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHh
Q psy6222 455 DVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLV 534 (863)
Q Consensus 455 D~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~ 534 (863)
|.++++++++|+.|+ +.|++.||.....+...... .. + .+..............||+++|+.||+.||++|+
T Consensus 508 D~l~~~~~~ll~~S~--~~~i~~lf~~~~~~~~~~~~-~~--~---~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~ 579 (691)
T cd01380 508 DTVSDEHLDVLKASK--NPFLKEVLDAAELASSSSSS-AK--S---KPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLN 579 (691)
T ss_pred ccccHHHHHHHHhCc--cHHHHHHhhhhccccccccc-cc--c---cccccccccccccCCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999987 56799999865432111000 00 0 0000000011223457999999999999999999
Q ss_pred ccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHH
Q psy6222 535 HARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCL 614 (863)
Q Consensus 535 ~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~ 614 (863)
+|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|+|.... ...+.++.|+
T Consensus 580 ~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~--~~~~~k~~~~ 657 (691)
T cd01380 580 STNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRVLVPSKEL--WKSDPKQLCE 657 (691)
T ss_pred ccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHHhCccccc--cCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987541 2345678999
Q ss_pred HHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 615 LILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 615 ~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
.||+.+..+ ..+|++|+||||||++++..||++|
T Consensus 658 ~iL~~~~~~------------~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 658 NILTKVIED------------EDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCCC------------cccEEecCceEEECcCHHHHHhhcC
Confidence 999887521 3689999999999999999999986
No 8
>KOG0164|consensus
Probab=100.00 E-value=1e-135 Score=1136.83 Aligned_cols=594 Identities=26% Similarity=0.433 Sum_probs=527.6
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccc-cchhhhhhccCcchhccccccccccccCCccceEEEE-----
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCS-AQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV----- 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~----- 85 (863)
-.+|++|+||||+|||++++-+++|.++..+.+...+ ..|+++++++|||||| ||||||.|||||||||||+.
T Consensus 93 rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEA-FGNAKT~RNdNSSRFGKYMDInFDf 171 (1001)
T KOG0164|consen 93 RDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEA-FGNAKTNRNDNSSRFGKYMDINFDF 171 (1001)
T ss_pred CCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHH-hcccccccCCchhhhhcceeeeccc
Confidence 4689999999999999999999999999887776543 3899999999999999 99999999999999999984
Q ss_pred -----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCccCCCHHHHHHHHHHH
Q psy6222 86 -----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWK 142 (863)
Q Consensus 86 -----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~~~~~dDa~~F~~l~ 142 (863)
|||||||||.|.. ||||||| ...|+|+. ++..|.||++|+..+.+++|+.+|+.++
T Consensus 172 KGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler-~~~~Y~ylnqg~~~v~sinD~~dfk~V~ 250 (1001)
T KOG0164|consen 172 KGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLER-NPQSYNYLNQGSAKVSSINDASDFKAVQ 250 (1001)
T ss_pred cCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhcccc-CcchhhhhhhhhhhhcccccHHHHHHHH
Confidence 9999999999988 9999998 56789987 7999999999999999999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
+||.++||+. ++||+|+|||||||||+|.+.+.+++ +.+...++.+|+||++..++|.++|+.|++.+
T Consensus 251 ~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~~~---------~~~~~~l~~~aell~v~~del~~aL~~Rtvaa 321 (1001)
T KOG0164|consen 251 KAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDSSG---------IVNGAQLKYIAELLSVTGDELERALTSRTVAA 321 (1001)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCcccc---------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999995 46899999999999999998642211 23448899999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+|+.+.+.++++||.++||||||++|+|||.|||.+||+.++.... +.
T Consensus 322 ~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~------~~-------------------------- 369 (1001)
T KOG0164|consen 322 GGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGV------IT-------------------------- 369 (1001)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccc------cc--------------------------
Confidence 9999999999999999999999999999999999999986643100 00
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCch
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVP 379 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~ 379 (863)
....+..||+|||||||+|+.|||||||||||||||||.|++.+++.|||||++|||+| ++|+|.+|.-
T Consensus 370 ----------~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W-~~i~YFnN~i 438 (1001)
T KOG0164|consen 370 ----------LRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEW-THIDYFNNKI 438 (1001)
T ss_pred ----------cccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCc-eehhhcCCce
Confidence 00124689999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred hhhhhhcccccccccchhhhcCC--CChhHHHHHHHhHhcCCCCCCCCC------CCCCCceEEEeeeeeeeecchhhhh
Q psy6222 380 CIDLISSLRTGLLSMLDVECSLR--GTAETYLGKVKAQHRHNPRLFDPK------PVDARCFTIQHFAGRVLYDTSDFLE 451 (863)
Q Consensus 380 ~ldLi~~~~~Gll~lLDeE~~~~--gtd~tfl~kl~~~~~~~~~~~~~k------~~~~~~F~I~HyAG~V~Y~v~gfle 451 (863)
++||+|.+..|||++|||||+.. -||++|+++|...++.|++|...+ ...-.+|.|.||||+|+|++.||++
T Consensus 439 IcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFid 518 (1001)
T KOG0164|consen 439 ICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFID 518 (1001)
T ss_pred eeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeec
Confidence 99999999999999999999985 489999999999999988876542 2234699999999999999999999
Q ss_pred hcCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHH
Q psy6222 452 TNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLR 531 (863)
Q Consensus 452 KNrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~ 531 (863)
||+|.|..|+..+|..|++ ..++.+|+....++. .-.+...|++.+|+.++..||+
T Consensus 519 KN~D~Lf~dlk~~m~~s~~--~~l~~~fpeG~~~~~----------------------~~tkRP~Tagt~Fk~Sm~~Lv~ 574 (1001)
T KOG0164|consen 519 KNNDLLFQDLKRLMYNSKN--PLLKSLFPEGNPDIA----------------------EVTKRPPTAGTLFKNSMAALVK 574 (1001)
T ss_pred cCccHHHHHHHHHHHhcCC--chHHHhCCCCChhHH----------------------hhhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999874 457888864211110 0012235889999999999999
Q ss_pred HHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHH
Q psy6222 532 SLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTE 611 (863)
Q Consensus 532 ~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e 611 (863)
.|.+-+|+||||||||+.+.|+.||.+.|.+|.+|+|+||.+|++|+||.+|++|+.|+.||+++++..|+.......++
T Consensus 575 nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd 654 (1001)
T KOG0164|consen 575 NLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSDKD 654 (1001)
T ss_pred HHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCCCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875433334577
Q ss_pred HHHHHHHHhHhhcccCcccccccCccceEeeceEEEec-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy6222 612 DCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLS-EGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRN 690 (863)
Q Consensus 612 ~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr-~~~~~~LE~~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~~r~~ 690 (863)
.|+.+++.... ..++++|+||||+| +.++..||++|.+.+...++.||++||||++|.+|++||..
T Consensus 655 ~v~vL~e~~g~-------------~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~ 721 (1001)
T KOG0164|consen 655 GVKVLLEHLGL-------------AGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKAS 721 (1001)
T ss_pred HHHHHHHHhcc-------------chhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999887652 36899999999998 78999999999999999999999999999999999999988
Q ss_pred HHhhhc
Q psy6222 691 LEMKSG 696 (863)
Q Consensus 691 ~~i~~~ 696 (863)
..|...
T Consensus 722 ~~ii~w 727 (1001)
T KOG0164|consen 722 ATIIRW 727 (1001)
T ss_pred HHHHHH
Confidence 776543
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.4e-134 Score=1196.53 Aligned_cols=554 Identities=27% Similarity=0.438 Sum_probs=484.3
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
-+||++|+||||+|||++++-++.|....+.+ +.|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 91 ~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEa-FGNAkT~~N~NSSRFGK~~~l~f~~~ 164 (677)
T cd01383 91 VNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEA-FGNAKTSRNDNSSRFGKLIEIHFSET 164 (677)
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHH-hhccccCCCCCcCccceeEEEEECCC
Confidence 37999999999999999999999998765432 2799999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. ||||||| +++|+|. ++++|+||+++ +...++++|+++|+.|+
T Consensus 165 g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~dd~~~f~~~~ 242 (677)
T cd01383 165 GKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLK--SASEYKYLKQSCCYSINGVDDAQRFHTLV 242 (677)
T ss_pred CcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCC--CHHHCceecCCCcccCCCccHHHHHHHHH
Confidence 8999999999888 9999999 4567886 58999999987 55778999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+.|||+. .+||+|||||||||||+|.+.+ +...+.+.+.+.++.||.||||+.++|.++|++|++.+
T Consensus 243 ~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~-------~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 315 (677)
T cd01383 243 EALDIVHISKEDQENVFAMLAAVLWLGNVSFTVID-------NENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHV 315 (677)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecC-------CCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEe
Confidence 9999999995 4699999999999999998752 22345667788999999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+|+.+.+++++++|..+||+|||+||+|||+|||++||.++....
T Consensus 316 ~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~----------------------------------- 360 (677)
T cd01383 316 NNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGK----------------------------------- 360 (677)
T ss_pred CCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 999999999999999999999999999999999999998653200
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCch
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVP 379 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~ 379 (863)
.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+| .+|+|.||++
T Consensus 361 -----------~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~-~~i~f~dN~~ 428 (677)
T cd01383 361 -----------RRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDW-TKVEFEDNQE 428 (677)
T ss_pred -----------ccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccccCCCcHH
Confidence 0123589999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred hhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCc
Q psy6222 380 CIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458 (863)
Q Consensus 380 ~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~ 458 (863)
|||||+++|.|||++|||||++ ++||++|++||..+++.|+.+..++ ...|+|+||||+|+|+++||++||+|.++
T Consensus 429 ~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyAG~V~Y~v~gfleKNrD~l~ 505 (677)
T cd01383 429 CLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGER---GGAFTVRHYAGEVTYDTTGFLEKNRDLLH 505 (677)
T ss_pred HHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCC---CCceEEEEeccceeecCCChHHhcccccc
Confidence 9999999999999999999998 8999999999999998888775543 46899999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCC
Q psy6222 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARP 538 (863)
Q Consensus 459 ~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~p 538 (863)
++++++|++|++. + ..+|.+...+ ++...+.. +.+ ........||+.+|+.||+.||++|++|+|
T Consensus 506 ~~~~~ll~~S~~~--~-~~~f~~~~~~----~s~~~~~~---~~~-----~~~~~~~~tv~~~fk~qL~~L~~~L~~t~p 570 (677)
T cd01383 506 SDSIQLLSSCKCQ--L-PQLFASSMLI----QSPVVGPL---YVA-----SAADSQKLSVGTKFKGQLFKLMQQLENTTP 570 (677)
T ss_pred HHHHHHHHhCchH--H-HHHHHhhhhc----cccccccc---ccc-----ccccccCcchHHHHHHHHHHHHHHHhCCCC
Confidence 9999999988754 3 3477553221 11010000 000 011234579999999999999999999999
Q ss_pred eeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHH
Q psy6222 539 HFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQ 618 (863)
Q Consensus 539 hFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~ 618 (863)
|||||||||+.++|+.||..+|++||||+||||+|+|+|.|||+|++|.+|++||++|++..... .+.++.|+.||+
T Consensus 571 hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~---~~~~~~~~~il~ 647 (677)
T cd01383 571 HFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIAS---QDPLSVSVAILQ 647 (677)
T ss_pred eEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCC---CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865321 234667888988
Q ss_pred HhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 619 CVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
.+.. ..++|++|+||||||.++++.||++|
T Consensus 648 ~~~~------------~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 648 QFNI------------LPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred hcCC------------CcccEEeccceEEecCcHHHHHhhcC
Confidence 7642 23689999999999999999999976
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.5e-133 Score=1191.28 Aligned_cols=560 Identities=29% Similarity=0.425 Sum_probs=485.5
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.+. +..|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 86 ~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEA-FGNAkT~~N~NSSRfGk~~~l~f~~g 161 (677)
T cd01387 86 QNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEA-FGNAKTVRNDNSSRFGKFVEIFLEGG 161 (677)
T ss_pred CCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHH-HhCcCCCCCCCccccceEEEEEecCC
Confidence 689999999999999999999999987755332 35799999999999999 99999999999999999974
Q ss_pred ---------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCC-ccCCCHHHHHHHHHHHH
Q psy6222 86 ---------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGD-TRQDDVEDAARFQAWKA 143 (863)
Q Consensus 86 ---------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~-~~~~~~dDa~~F~~l~~ 143 (863)
|||||+||+.+.. ||||||| +++++|. ++++|+||+++. ...++.+|+++|+.|+.
T Consensus 162 ~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~--~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 162 VIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQ--EAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred cEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCC--CHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 8999999999888 9999998 4567776 589999999884 45678899999999999
Q ss_pred HhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEecC
Q psy6222 144 CLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNAR 220 (863)
Q Consensus 144 Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~~ 220 (863)
||+.|||+. .+||+|||||||||||+|.+... ++.+.+.+.+++.++.||.||||+.++|.++|++|++.++
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~-----~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~ 314 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRET-----DAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETR 314 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccC-----CCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999994 57999999999999999987531 2223467888899999999999999999999999999999
Q ss_pred CeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCch
Q psy6222 221 GQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSK 300 (863)
Q Consensus 221 ~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~ 300 (863)
++.+.+++++++|..+||+|||+||+|||+|||++||.++.. +
T Consensus 315 ~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~--~----------------------------------- 357 (677)
T cd01387 315 REKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSP--T----------------------------------- 357 (677)
T ss_pred CceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C-----------------------------------
Confidence 999999999999999999999999999999999999985532 0
Q ss_pred hhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCchh
Q psy6222 301 SMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPC 380 (863)
Q Consensus 301 s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ 380 (863)
....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+| ..|+|.||++|
T Consensus 358 -----------~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~-~~i~f~dN~~~ 425 (677)
T cd01387 358 -----------QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDW-TEIAFADNQPV 425 (677)
T ss_pred -----------CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccCcCChHHH
Confidence 013589999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred hhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCcH
Q psy6222 381 IDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459 (863)
Q Consensus 381 ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~ 459 (863)
||||+++|.|||++|||||++ +++|++|++|+..+|+.++.+..|+. ....|+|+||||+|+|+++||++||+|.+++
T Consensus 426 ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~ 504 (677)
T cd01387 426 INLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKM-PLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQ 504 (677)
T ss_pred HHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCC-CCCeeEEEEeCceeeecCCChHHhccchhhH
Confidence 999999999999999999998 79999999999999988887776653 3468999999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCe
Q psy6222 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPH 539 (863)
Q Consensus 460 dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ph 539 (863)
+++++|++|+ +.+++.+|....... .....+++. + ........||+.+|+.||+.||++|++|+||
T Consensus 505 ~~~~ll~~S~--~~~i~~lf~~~~~~~-~~~~~~~~s-------~----~~~~~~~~tv~~~f~~sL~~L~~~l~~t~ph 570 (677)
T cd01387 505 DVLDLFVSSR--TRVVAHLFSSHAAQR-APKRLGKSS-------S----GTRLYKAHTVAAKFQQSLLDLVEKMERCNPL 570 (677)
T ss_pred HHHHHHHhCC--cHHHHHHHhhhhccc-ccccccCCC-------c----cccccCCCcHHHHHHHHHHHHHHHHhcCCCe
Confidence 9999999876 567999997532110 000000000 0 0012235799999999999999999999999
Q ss_pred eEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHHH
Q psy6222 540 FVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQC 619 (863)
Q Consensus 540 FIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~~ 619 (863)
||||||||+.++|+.||..+|++||||+||||+|+|+|.|||+|++|.+|++||++|++...... . ...+.++.+++.
T Consensus 571 fIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~-~-~~~~~~~~ll~~ 648 (677)
T cd01387 571 FVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARP-A-PGDMCVSELSRL 648 (677)
T ss_pred EEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCC-C-cHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998643221 1 112234556554
Q ss_pred hHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 620 VEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
+. ....+|++|+||||||+++++.||.+|
T Consensus 649 ~~------------~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 649 CG------------VEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cC------------CCcccEEecceeEEEcCCHHHHHHhcC
Confidence 33 124689999999999999999999976
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.3e-133 Score=1192.66 Aligned_cols=550 Identities=27% Similarity=0.442 Sum_probs=489.6
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.+.. ....|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 85 ~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEA-FGNAkT~~N~NSSRFgk~~~l~f~~~ 162 (674)
T cd01378 85 ENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEA-FGNAKTLRNNNSSRFGKYMEIQFDFK 162 (674)
T ss_pred CCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHH-hhccccCCCCCcchhheeEEEEECCC
Confidence 5899999999999999999999999987655433 234699999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCc-cCCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDT-RQDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~-~~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. ||||||| +++++|+. +++|+||+++.. .+++++|+++|++++
T Consensus 163 g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~--~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 163 GDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQK--PEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCC--hhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 8999999999887 9999999 56678874 799999998854 788999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
+||+.|||+. .+||+|||||||||||+|.+.+ ...+.+.+.+.++.||.||||+.++|.++|++|++.+
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~--------~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 312 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENG--------DGAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIET 312 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccC--------CCccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEe
Confidence 9999999994 5699999999999999998752 1226788999999999999999999999999999999
Q ss_pred CC----eEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCC
Q psy6222 220 RG----QLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAG 295 (863)
Q Consensus 220 ~~----e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~ 295 (863)
++ +.+++++++++|..+||+|||+||+|||+|||.+||+++... .
T Consensus 313 ~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~---------~---------------------- 361 (674)
T cd01378 313 GGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVK---------S---------------------- 361 (674)
T ss_pred CCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------c----------------------
Confidence 88 999999999999999999999999999999999999865320 0
Q ss_pred CCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCccccccccc
Q psy6222 296 SKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYV 375 (863)
Q Consensus 296 ~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~ 375 (863)
.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+| ..|+|.
T Consensus 362 ---------------~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~-~~i~f~ 425 (674)
T cd01378 362 ---------------PGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKW-TPIEYF 425 (674)
T ss_pred ---------------ccCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcCcC
Confidence 0124589999999999999999999999999999999999999999999999999999 599999
Q ss_pred CCchhhhhhhc-ccccccccchhhhcC--CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhh
Q psy6222 376 DNVPCIDLISS-LRTGLLSMLDVECSL--RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLET 452 (863)
Q Consensus 376 DN~~~ldLi~~-~~~Gll~lLDeE~~~--~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleK 452 (863)
||++|||||++ +|.|||++|||||++ +++|++|++||+.++++++++..++ ..+..|+|+||||+|+|+++||++|
T Consensus 426 DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~-~~~~~F~I~HyAG~V~Y~~~gfleK 504 (674)
T cd01378 426 NNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS-SGSDEFRIKHYAGDVTYSVEGFCDK 504 (674)
T ss_pred ChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC-CCCCcEEEEEeceeeeecCcCHHHh
Confidence 99999999999 899999999999997 5899999999999998888755444 4568999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHH
Q psy6222 453 NKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRS 532 (863)
Q Consensus 453 NrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~ 532 (863)
|+|.++++++++|++|++ .+|+.||.+... . .+.....||+++|+.||+.||++
T Consensus 505 NrD~l~~~~~~ll~~S~n--~~i~~lf~~~~~--------~----------------~~~~~~~tv~~~fk~qL~~Lm~~ 558 (674)
T cd01378 505 NKDTLFKDLIELMQSSSN--PFLRSLFPEKSD--------A----------------DSKKRPTTAGFKIKTSANALVET 558 (674)
T ss_pred hcchhhHHHHHHHHhCch--HHHHHHhccccc--------c----------------cccCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999874 568998864210 0 01122368999999999999999
Q ss_pred HhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHH
Q psy6222 533 LVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTED 612 (863)
Q Consensus 533 L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~ 612 (863)
|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++... .....+.++.
T Consensus 559 L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~-~~~~~~~k~~ 637 (674)
T cd01378 559 LMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTW-PTWPGDAKSG 637 (674)
T ss_pred HHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccc-cccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998643 2233456889
Q ss_pred HHHHHHHhHhhcccCcccccccCccceEeeceEEEechh-HHHHHHHHH
Q psy6222 613 CLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEG-IRQQLEMLR 660 (863)
Q Consensus 613 ~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~-~~~~LE~~R 660 (863)
|+.||+.+.. ...+|++|+||||||++ ++..||++|
T Consensus 638 ~~~iL~~~~~------------~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 638 VEVILKDLNI------------DPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHcCC------------CcccEEecCceEEEeCchhHHHHHhcC
Confidence 9999987652 23689999999999997 899999986
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.4e-133 Score=1190.78 Aligned_cols=563 Identities=29% Similarity=0.446 Sum_probs=489.9
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.. ++..+.|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 93 ~~QsIiisGESGAGKTet~K~il~yL~~~s~~-~~~~~~i~~~i~~snpiLEA-FGNAkT~~N~NSSRFGK~i~l~F~~~ 170 (692)
T cd01385 93 VNQCIVISGESGSGKTESTNFLIHHLTALSQK-GYAGSGVEQTILSAGPVLEA-FGNAKTAHNNNSSRFGKFIQVNYREN 170 (692)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHHhccC-CccCCcHHHHHHHHHHHHHH-hhccccCCCCCccccceeEEEEECCC
Confidence 47999999999999999999999998775532 23446899999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHHH--------HHcCCCCCCCCCccccCCCCcc-CCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSVT--------VKLHLESYTPLNLSYLQSGDTR-QDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL~--------~~l~L~~~~~~~y~YL~qg~~~-~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. |||||||. ++++|. ++.+|+||++++.. .++++|+.+|++|+
T Consensus 171 g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~--~~~~y~yL~~~~~~~~~~~dd~~~f~~~~ 248 (692)
T cd01385 171 GMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLL--KQPDYFYLNQHNLKIEDGEDEKHEFERLK 248 (692)
T ss_pred CCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCC--ChhcCCeeCCCCCccCCCCCHHHHHHHHH
Confidence 9999999999988 99999994 445665 46799999998654 46899999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+.|||+. .+||+|||||||||||+|.+.... +..+.+.+.+++.++.||.||||+.++|.++|+++++.+
T Consensus 249 ~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~----~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 324 (692)
T cd01385 249 QAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATY----HRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVT 324 (692)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccC----CCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEe
Confidence 9999999984 579999999999999999875321 223457788999999999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+|+.+++++++++|..+||+|||+||+|||+|||++||+++.... ++
T Consensus 325 ~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-------~~-------------------------- 371 (692)
T cd01385 325 VNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKD-------DV-------------------------- 371 (692)
T ss_pred CCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cc--------------------------
Confidence 999999999999999999999999999999999999998553200 00
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCC-CchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCc
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKP-SQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNV 378 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~-NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~ 378 (863)
.....+||||||||||+|+. ||||||||||||||||++|++++|+.||++|++|||+| .+|+|.||+
T Consensus 372 -----------~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~-~~i~f~dN~ 439 (692)
T cd01385 372 -----------AVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITW-TNIEYTDNV 439 (692)
T ss_pred -----------cccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccccCCCcH
Confidence 01235899999999999999 99999999999999999999999999999999999999 599999999
Q ss_pred hhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCC
Q psy6222 379 PCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVV 457 (863)
Q Consensus 379 ~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l 457 (863)
+|||||+++|.|||++|||||++ ++||++|++|++..|++++.+.+|+. ...+|+|+||||+|+|+++||++||+|.+
T Consensus 440 ~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfleKN~D~l 518 (692)
T cd01385 440 GCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYEGPQV-KEPAFIIQHYAGKVKYQIKDFREKNMDLM 518 (692)
T ss_pred HHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCccCCCC-CCCeEEEEEecceeeecCCCHHHhccccc
Confidence 99999999999999999999998 79999999999999998887776653 45689999999999999999999999999
Q ss_pred cHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q psy6222 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHAR 537 (863)
Q Consensus 458 ~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ 537 (863)
+++++++|++|++ .+++.||+....+.. +..+.+. ..+.....||+++|+.||++||++|++|+
T Consensus 519 ~~~~~~ll~~S~n--~~i~~lf~~~~~~~~------~~~~~~~--------~~~~~~~~tV~~~f~~~L~~L~~~L~~t~ 582 (692)
T cd01385 519 RQDIVALLKGSDS--SYVRELIGMDPVAVF------RWAVLRA--------AFRAMAAPSVSAQFQTSLNKLMETLGKAE 582 (692)
T ss_pred cHHHHHHHHhCcc--HHHHHHhccCccccc------ccccccc--------cccCccCCcHHHHHHHHHHHHHHHHhccC
Confidence 9999999999874 579999975321110 0000000 00112236999999999999999999999
Q ss_pred CeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHH
Q psy6222 538 PHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLIL 617 (863)
Q Consensus 538 phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL 617 (863)
||||||||||..++|+.||..+|++||||+||+|+|+|+|.|||+|++|.+|++||++|+|... ...+++|+.||
T Consensus 583 ~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~~~~-----~~~~~~~~~il 657 (692)
T cd01385 583 PFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLPKGA-----QSCREDISTLL 657 (692)
T ss_pred CeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCcccc-----cchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997532 22356799998
Q ss_pred HHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHH
Q psy6222 618 QCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRS 661 (863)
Q Consensus 618 ~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~ 661 (863)
+.+.. ...+|++|+||||||+++++.||+...
T Consensus 658 ~~~~~------------~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 658 SKMKI------------DKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred HhcCC------------CcccEEeeCceEEEcccHHHHHHHHHh
Confidence 87652 236899999999999999999998764
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.1e-132 Score=1190.28 Aligned_cols=553 Identities=29% Similarity=0.449 Sum_probs=483.9
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.+ ...|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 90 ~~QsIiisGESGaGKTes~K~il~yLa~~~~~----~~~i~~~il~snpiLEA-FGNAkT~~N~NSSRFGK~~~l~f~~~ 164 (717)
T cd01382 90 MSQSIIVSGESGAGKTENTKFVLRYLTESYGS----GQDIDDRIVEANPLLEA-FGNAKTVRNNNSSRFGKFVEIHFNEK 164 (717)
T ss_pred CCCeEEEecCCCCChhHHHHHHHHHHHhhccC----CccHHHHHHHHHHHHHH-hhccccCCCCCcccceeEEEEEECCC
Confidence 58999999999999999999999998764322 25899999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCc----------------
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDT---------------- 127 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~---------------- 127 (863)
|||||+||+.+.. ||||||| +++|+|+ ++++|+||++|+.
T Consensus 165 g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 165 NSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLS--SPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCC--ChhhCeeecCCcccccccccccccccccc
Confidence 8999999999888 9999999 5667886 5899999998743
Q ss_pred -----------cCCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhh
Q psy6222 128 -----------RQDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGEST 193 (863)
Q Consensus 128 -----------~~~~~dDa~~F~~l~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~ 193 (863)
..++++|+++|+.|+.||+.|||+. .+||+|||||||||||+|.+.+.. .+.+.+...+.+.
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~----~~~~~~~~~~~~~ 318 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGST----SGGCNVKNQSEQS 318 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCC----CCcceecCCCHHH
Confidence 2456899999999999999999994 569999999999999999975321 2234455567889
Q ss_pred HHHhHhcCCCCHHHHHhhHceeEEe-----cCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCC
Q psy6222 194 LNSVASLLGVPSASLFRGITTRTHN-----ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGT 268 (863)
Q Consensus 194 l~~aA~LLGv~~~~L~~aLt~r~~~-----~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~ 268 (863)
++.||.||||++++|.++|++|++. ++|+.+++++++++|..+||+|||+||++||+|||++||.++..
T Consensus 319 l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~------ 392 (717)
T cd01382 319 LEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPF------ 392 (717)
T ss_pred HHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 9999999999999999999999988 78999999999999999999999999999999999999985421
Q ss_pred CCCCCccccccchhhhhccccccccCCCCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHH
Q psy6222 269 LSSDSNESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHF 348 (863)
Q Consensus 269 l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 348 (863)
+ ....+||||||||||+|+.||||||||||||||||++
T Consensus 393 ---~---------------------------------------~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 430 (717)
T cd01382 393 ---E---------------------------------------TSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 430 (717)
T ss_pred ---C---------------------------------------CCCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHH
Confidence 0 1235899999999999999999999999999999999
Q ss_pred HhHhhhhhhHhhhhccCCcccccccccCCchhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCC
Q psy6222 349 YNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKP 427 (863)
Q Consensus 349 f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~ 427 (863)
|+++||+.||++|++|||+| .+|+|.||++|||||+++|.|||++|||||++ ++||++|++||+..+++++++..|+.
T Consensus 431 f~~~if~~Eq~~Y~~EgI~~-~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~ 509 (717)
T cd01382 431 FNERILKEEQELYQREGLGV-NEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRK 509 (717)
T ss_pred HHHHHHHHHHHHHHhcCCCC-ccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCc
Confidence 99999999999999999999 59999999999999999999999999999999 79999999999999988877665532
Q ss_pred C---------CCCceEEEeeeeeeeecchhhhhhcCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCccc
Q psy6222 428 V---------DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISF 498 (863)
Q Consensus 428 ~---------~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~ 498 (863)
. ....|+|+||||+|+|+++||++||+|.++++++++|++|+ +.+++.||...... +...
T Consensus 510 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~--n~~i~~lf~~~~~~-------~~~~-- 578 (717)
T cd01382 510 SKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK--DKFLRSLFESSTNN-------NDTK-- 578 (717)
T ss_pred cccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc--hHHHHHHhcccccc-------cccc--
Confidence 1 23589999999999999999999999999999999999887 45799999753210 0000
Q ss_pred ccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhc
Q psy6222 499 RISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578 (863)
Q Consensus 499 r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~ 578 (863)
. ..++....||+.+|+.||+.||++|++|+||||||||||..++|+.||..+|++||||+||||+|+|+|.
T Consensus 579 ---~------~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~ 649 (717)
T cd01382 579 ---Q------KAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQG 649 (717)
T ss_pred ---c------cccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHc
Confidence 0 0112234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHH
Q psy6222 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEM 658 (863)
Q Consensus 579 GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~ 658 (863)
|||+|++|.+|++||+.|+|.... ..+.++.|+.||+.+.. ...+|++|+||||||++++..||+
T Consensus 650 Gyp~R~~f~~F~~ry~~l~~~~~~---~~~~~~~~~~iL~~~~~------------~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 650 GFPSRASFHELYNMYKKYMPPKLV---RLDPRLFCKALFKALGL------------NENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred cCchhhhHHHHHHHHHHhCCcccC---CCCHHHHHHHHHHHcCC------------CcccEEecceeEEecccHHHHHHH
Confidence 999999999999999999875431 12357889999987652 236899999999999999999998
Q ss_pred H
Q psy6222 659 L 659 (863)
Q Consensus 659 ~ 659 (863)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 6
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.5e-131 Score=1179.64 Aligned_cols=554 Identities=31% Similarity=0.513 Sum_probs=496.3
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+.+.. ....|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 91 ~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEA-FGNAkT~~N~NSSRfgk~~~l~f~~~ 168 (677)
T smart00242 91 ENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEA-FGNAKTVRNNNSSRFGKFIEIHFDAK 168 (677)
T ss_pred CCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHH-hhccccCCCCCccchheeEEEEECCC
Confidence 5899999999999999999999999987665432 345899999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. ||||||| +++|+|+ ++++|+||+++ +...++.+|+++|++++
T Consensus 169 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 246 (677)
T smart00242 169 GKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLK--SPEDYRYLNQGGCLSVDGIDDAEEFKETL 246 (677)
T ss_pred CcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCC--ChhhCceeCCCCCccCCCCCHHHHHHHHH
Confidence 8999999999888 9999999 4568887 48999999987 66778899999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+.|||+. .+||+|||||||||||+|.+.+. +.....+.+.+.++.||.||||+.++|.++|+++++.+
T Consensus 247 ~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~------~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 247 NAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRN------DNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCC------CCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 9999999994 57999999999999999997632 11122378889999999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+++.+++++++++|...||+|||+||+|||+|||++||+++...
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~------------------------------------ 364 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFK------------------------------------ 364 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------------------------
Confidence 99999999999999999999999999999999999999865320
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCch
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVP 379 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~ 379 (863)
.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+| ..++|.||++
T Consensus 365 -----------~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~-~~i~~~dN~~ 432 (677)
T smart00242 365 -----------DGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDW-TFIDFFDNQD 432 (677)
T ss_pred -----------CCCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCcHH
Confidence 0124589999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred hhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCc
Q psy6222 380 CIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458 (863)
Q Consensus 380 ~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~ 458 (863)
|||||+++|.|||++|||||++ +++|++|++||...+++++.+..|+...+..|+|+||||+|+|+++||++||+|.++
T Consensus 433 ~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~ 512 (677)
T smart00242 433 CIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLF 512 (677)
T ss_pred HHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhh
Confidence 9999999999999999999998 799999999999999999988888666778999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCC
Q psy6222 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARP 538 (863)
Q Consensus 459 ~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~p 538 (863)
++++++|++|+ +.+++.||+..... . .......||+++|+.||+.||++|++|+|
T Consensus 513 ~~~~~ll~~S~--n~~i~~lf~~~~~~--------~---------------~~~~~~~tv~~~fk~~L~~L~~~l~~t~~ 567 (677)
T smart00242 513 KDLIELLQSSK--NPLIASLFPSGESN--------A---------------GSKKRFRTVGSQFKESLNKLMDTLNSTNP 567 (677)
T ss_pred HHHHHHHHhCC--cHHHHHHhcccccc--------c---------------cccCCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 99999999987 45799998753211 0 01123469999999999999999999999
Q ss_pred eeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHH
Q psy6222 539 HFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQ 618 (863)
Q Consensus 539 hFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~ 618 (863)
|||||||||+.++|+.||...|++||||+||||+++|+|.|||+|++|.+|+.||++|++... .....+.++.|+.||+
T Consensus 568 hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~-~~~~~~~k~~~~~iL~ 646 (677)
T smart00242 568 HFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTW-PPWGGDAKEACEALLQ 646 (677)
T ss_pred eEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccc-cccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998644 2233346889999998
Q ss_pred HhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHH
Q psy6222 619 CVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRS 661 (863)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~ 661 (863)
.+.. ...+|++|+||||||+++++.||++|+
T Consensus 647 ~~~~------------~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 647 SLGL------------DEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred hcCC------------CcccEEecCceEeECccHHHHHHhhcC
Confidence 7652 236899999999999999999999985
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.6e-130 Score=1159.91 Aligned_cols=531 Identities=30% Similarity=0.484 Sum_probs=467.5
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
-+||++|+||||+|||++++-++.|....+. +....|+++|+++|||||| ||||+|+||+||||||||+.
T Consensus 85 ~~QsIiisGESGsGKTet~K~l~~yL~~~~~---~~~~~i~~~il~snpiLEA-FGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 85 QDQCIVISGESGSGKTESAHLLVQQLTVLGK---ANNRTLQEKILQVNSLVEA-FGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHHhcC---CCCccHHHHHHHHHHHHHH-hhccCcCCCCCcccceeEEEEEECCC
Confidence 4799999999999999999999999865432 2235799999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHHH---------HHcCCCCCCCCCccccCCCCcc-CCC----HHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSVT---------VKLHLESYTPLNLSYLQSGDTR-QDD----VEDAAR 137 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL~---------~~l~L~~~~~~~y~YL~qg~~~-~~~----~dDa~~ 137 (863)
|||||+||+.+.. |||||||. ++++|. ++++|+||+++... .++ .+|+++
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~--~~~~~~yL~~~~~~~~~~~~~~~~~~~~ 238 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLP--ESKTPRYLQNEATRVVQDITSNKFYKDQ 238 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCC--CccccCccCCCCccccCCCccchhHHHH
Confidence 9999999999888 99999994 345565 47899999987542 333 346889
Q ss_pred HHHHHHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHce
Q psy6222 138 FQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITT 214 (863)
Q Consensus 138 F~~l~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~ 214 (863)
|++|+.||++|||+. .+||+|||||||||||+|.+.+.. +..+.+.+.+.+.++.||.||||+.++|.++|++
T Consensus 239 f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~----~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~ 314 (653)
T cd01379 239 FEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASE----HQTDKSRVSNVAALENAASLLCIRSDELQEALTS 314 (653)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecccc----CCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 999999999999995 469999999999999999876321 2234567889999999999999999999999999
Q ss_pred eEEecCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccC
Q psy6222 215 RTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTA 294 (863)
Q Consensus 215 r~~~~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~ 294 (863)
|++.++|+.+++++++++|..+||+|||+||+|||+|||++||+++... ...
T Consensus 315 ~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~---------~~~------------------- 366 (653)
T cd01379 315 HCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHD---------RNA------------------- 366 (653)
T ss_pred cEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------ccc-------------------
Confidence 9999999999999999999999999999999999999999999865320 000
Q ss_pred CCCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccc
Q psy6222 295 GSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDY 374 (863)
Q Consensus 295 ~~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~ 374 (863)
+. .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|. .++|
T Consensus 367 ~~--------------~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~-~i~~ 431 (653)
T cd01379 367 SN--------------SSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDAR-LVEY 431 (653)
T ss_pred cc--------------ccccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCC
Confidence 00 01235899999999999999999999999999999999999999999999999999995 8999
Q ss_pred cCCchhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhc
Q psy6222 375 VDNVPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETN 453 (863)
Q Consensus 375 ~DN~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKN 453 (863)
.||++|||||+++|.|||++|||||++ +|||++|++|+...+++ +.+..|+. ....|+|+||||+|+|+++||++||
T Consensus 432 ~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~~~~~~-~~~~F~I~HyAG~V~Y~~~gfleKN 509 (653)
T cd01379 432 EDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFFWRPKR-VELSFGIHHYAGKVLYNASGFLEKN 509 (653)
T ss_pred CCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCccCCCC-CCCceEEEEeceeEeecCCCHHHhc
Confidence 999999999999999999999999998 89999999999988754 44555553 4578999999999999999999999
Q ss_pred CCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHH
Q psy6222 454 KDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSL 533 (863)
Q Consensus 454 rD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L 533 (863)
+|.++++++++|++| +||+++|+.||++||++|
T Consensus 510 kD~l~~~~~~ll~~S-----------------------------------------------~tv~~~fr~~l~~L~~~l 542 (653)
T cd01379 510 RDFLPADIVLLLRSS-----------------------------------------------QTVASYFRYSLMDLLSKM 542 (653)
T ss_pred cccccHHHHHHHHhC-----------------------------------------------cHHHHHHHHHHHHHHHHH
Confidence 999999999998654 268899999999999999
Q ss_pred hccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHH
Q psy6222 534 VHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDC 613 (863)
Q Consensus 534 ~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~ 613 (863)
.+|+||||||||||+.++|+.||...|++||||+||||+|+|+|.|||+|++|.+|+.||++|++.... ...+.++.|
T Consensus 543 ~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~--~~~~~~~~~ 620 (653)
T cd01379 543 VVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEE--EPVSSPESC 620 (653)
T ss_pred hccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcccccc--ccCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865432 123457899
Q ss_pred HHHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 614 LLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 614 ~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
+.||+.+. .++|++||||||||+++++.||++|
T Consensus 621 ~~il~~~~--------------~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 621 ALILEKAK--------------LDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHhCC--------------CCCEEecceEEEEecCHHHHHHhcC
Confidence 99998654 1469999999999999999999976
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3.7e-130 Score=1170.32 Aligned_cols=562 Identities=32% Similarity=0.505 Sum_probs=492.7
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
.+||++|+||||+|||++++-++.|....+... +..|+++|+++|||||| ||||+|++|+||||||||+.
T Consensus 85 ~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEa-FGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 85 RNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEA-FGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHH-hcccccCCCCCcccceeEEEEEECCC
Confidence 589999999999999999999999987765433 45799999999999999 99999999999999999974
Q ss_pred ----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCcc-CCCHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTR-QDDVEDAARFQAWK 142 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~-~~~~dDa~~F~~l~ 142 (863)
|||||+||+.+.. ||||||| +++|+|+ ++++|+||+++... .++++|+++|++++
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~--~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 238 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLK--RPESYRYLNQGGCNDVDGIDDAEEFEELK 238 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCC--CcccCeeeCCCCcccCCCCCHHHHHHHHH
Confidence 9999999999888 9999999 4567887 47999999998654 48999999999999
Q ss_pred HHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEec
Q psy6222 143 ACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNA 219 (863)
Q Consensus 143 ~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~ 219 (863)
.||+.|||+. .+||+|||||||||||+|.+.+. .+...+.+.+.+.++.||.||||+.++|.++|+++++.+
T Consensus 239 ~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~-----~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 239 EALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGG-----EGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC-----CCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 9999999984 57999999999999999998632 112257789999999999999999999999999999999
Q ss_pred CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCc
Q psy6222 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSS 299 (863)
Q Consensus 220 ~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s 299 (863)
+|+.+++++++++|..+||+|||+||++||+|||++||.++...
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~------------------------------------ 357 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK------------------------------------ 357 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------------------------
Confidence 99999999999999999999999999999999999999865320
Q ss_pred hhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCch
Q psy6222 300 KSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVP 379 (863)
Q Consensus 300 ~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~ 379 (863)
.....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|++|||+|. .++|.||++
T Consensus 358 -----------~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~-~i~~~dn~~ 425 (679)
T cd00124 358 -----------DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWE-SIDFTDNQE 425 (679)
T ss_pred -----------CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCcc-CCcCCCCHH
Confidence 01235899999999999999999999999999999999999999999999999999994 999999999
Q ss_pred hhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCc
Q psy6222 380 CIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458 (863)
Q Consensus 380 ~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~ 458 (863)
|||||+++|.|||++|||||++ +++|++|++||...|++++.+..++...+..|+|+||||+|+|+++||++||+|.++
T Consensus 426 ~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~ 505 (679)
T cd00124 426 VIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLS 505 (679)
T ss_pred HHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCccc
Confidence 9999999999999999999998 799999999999999998877666556678999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCC
Q psy6222 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARP 538 (863)
Q Consensus 459 ~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~p 538 (863)
++++++|+.|+ +.+|+.||......... .+.+. .....+.....||+++|+.||+.||++|++|+|
T Consensus 506 ~~~~~ll~~S~--~~~i~~lf~~~~~~~~~-------~~~~~-----~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~ 571 (679)
T cd00124 506 PELVSLLKSSS--NPFIRELFESELSKTGN-------SSTGS-----TSSKGKKKKGQTVGSQFRTSLDALMATLNSTEP 571 (679)
T ss_pred HHHHHHHHhCC--cHHHHHHhccccccccc-------ccccc-----ccccccccCCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999987 45799999764221110 00000 000112234579999999999999999999999
Q ss_pred eeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHH
Q psy6222 539 HFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQ 618 (863)
Q Consensus 539 hFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~ 618 (863)
|||||||||+.++|+.||...|++||||+||+|+|+|+|.|||+|++|.+|++||++|++..... ...+ .+.|+.+|+
T Consensus 572 hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~-~~~~-~~~~~~il~ 649 (679)
T cd00124 572 HFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEK-VSLT-KKQVECLLE 649 (679)
T ss_pred eEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcccccc-cCCc-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865422 2222 234888887
Q ss_pred HhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 619 CVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
.+.. ...+|++|+||||||++++..||++|
T Consensus 650 ~~~~------------~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 650 LLGL------------PKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred hcCC------------CccCEEecCCeEEECcCHHHHHhccC
Confidence 6542 24689999999999999999999875
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.4e-127 Score=1148.87 Aligned_cols=572 Identities=21% Similarity=0.243 Sum_probs=464.8
Q ss_pred hccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE-----
Q psy6222 11 LNEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV----- 85 (863)
Q Consensus 11 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~----- 85 (863)
-.+||++|+||||+|||++++-++.|....+.... .....++|+++|||||| ||||+|+|||||||||||+.
T Consensus 84 ~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~--~~~~~e~i~~~npiLEA-FGNAkT~rNdNSSRFGK~i~l~F~~ 160 (767)
T cd01386 84 RRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD--GRVSVEKVRALFTILEA-FGNVSTALNGNATRFTQILSLDFDQ 160 (767)
T ss_pred CCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC--cccHHHHHHhhchHHHH-hhccCcCCCCCcCcceeEEEEEECC
Confidence 35899999999999999999999999987653322 12234689999999999 99999999999999999974
Q ss_pred -----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccC-CCCccCCCHHHHHHHHHH
Q psy6222 86 -----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQ-SGDTRQDDVEDAARFQAW 141 (863)
Q Consensus 86 -----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~-qg~~~~~~~dDa~~F~~l 141 (863)
|||||+|||.|.. ||||||| +++|+|+.. ++.|.|.. ..+...++++|+++|++|
T Consensus 161 ~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~-~~~~~~~~~~~~~~~d~~~D~~~f~~~ 239 (767)
T cd01386 161 TGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQM-AESSSFGMGGLSKPEDKQKAAIDFSRL 239 (767)
T ss_pred CCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCc-cccchhhcCCCCCCcCcccHHHHHHHH
Confidence 9999999999988 9999999 456788752 22222221 223346788999999999
Q ss_pred HHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEe
Q psy6222 142 KACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHN 218 (863)
Q Consensus 142 ~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~ 218 (863)
++||++|||+. .+||+|||||||||||+|.+.. + .+.+.+.+.++.||.||||+.++|.++|+++++.
T Consensus 240 ~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~------~---~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~ 310 (767)
T cd01386 240 QQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA------G---RKQFARPEWAQKAAELLGCPLEELSSATFKHTLR 310 (767)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC------C---ccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEe
Confidence 99999999994 4699999999999999998731 1 2567788999999999999999999999988765
Q ss_pred cCCe-------------EEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhh
Q psy6222 219 ARGQ-------------LVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVAS 285 (863)
Q Consensus 219 ~~~e-------------~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~ 285 (863)
.++. .+....++++|.++||||||+||+|||+|||++||.++...
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~---------------------- 368 (767)
T cd01386 311 GGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSS---------------------- 368 (767)
T ss_pred ecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------------
Confidence 5433 22335678899999999999999999999999999855320
Q ss_pred ccccccccCCCCCchhhHhhhhhcccCccceeeeecCCCCCCCCC------CchhHHHHhhhhhhHHHHHhHhhhhhhHh
Q psy6222 286 QHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKP------SQLEHLCINLCAETMQHFYNTHMFKSSIE 359 (863)
Q Consensus 286 q~~s~~~~~~~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~------NsfEQLcINyaNEkLQ~~f~~~iF~~eqe 359 (863)
.....+||||||||||+|+. ||||||||||||||||++|+++||+.||+
T Consensus 369 -------------------------~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~ 423 (767)
T cd01386 369 -------------------------HHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLE 423 (767)
T ss_pred -------------------------CCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 01124899999999999984 89999999999999999999999999999
Q ss_pred hhhccCCcccccccccCCchhhhhhhccc--------------ccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCC
Q psy6222 360 SCRDENIHSDVEVDYVDNVPCIDLISSLR--------------TGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFD 424 (863)
Q Consensus 360 eY~~EGI~~~~~i~~~DN~~~ldLi~~~~--------------~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~ 424 (863)
+|++|||+|.....+.||++|||||+++| .|||++|||||++ ++||++|++||+..+++++.+..
T Consensus 424 eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~ 503 (767)
T cd01386 424 RYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRET 503 (767)
T ss_pred HHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCccc
Confidence 99999999953345579999999999864 5999999999999 78999999999999987776654
Q ss_pred C-----CCCCCCceEEEeeeee--eeecchhhhhhcCCCC-cHHHHHHHHhccccccchhhhhhhhHHhhh---cc----
Q psy6222 425 P-----KPVDARCFTIQHFAGR--VLYDTSDFLETNKDVV-PDDLVSVFHKQTCIFGFATHLFGSELKALY---SL---- 489 (863)
Q Consensus 425 ~-----k~~~~~~F~I~HyAG~--V~Y~v~gfleKNrD~l-~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~---~~---- 489 (863)
+ ++....+|+|+||||. |+|+++||++||||.+ +.+++++|++|+ +.+|..||........ ..
T Consensus 504 ~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~--~~~i~~lF~~~~~~~~~~~~~~~~~ 581 (767)
T cd01386 504 GLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSK--REEINSLFQGRAGLAPVCLGAGAGL 581 (767)
T ss_pred CccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCC--cHHHHHHHhcccccccccccccccc
Confidence 2 1123468999999995 9999999999999975 589999999887 4679999965321100 00
Q ss_pred -----ccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCeeEeeccCCCCCC-------------
Q psy6222 490 -----ETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSET------------- 551 (863)
Q Consensus 490 -----~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~phFIRCIKPN~~k~------------- 551 (863)
+..++..+.|.+.++++ +..+.+||+.+|+.||+.||++|++|+||||||||||+.++
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~----~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~ 657 (767)
T cd01386 582 EGTSQQALRRSSSIRRTFTSST----AAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQ 657 (767)
T ss_pred cccccccccccccccccccccc----cccccccHHHHHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccc
Confidence 00111111111111111 11234689999999999999999999999999999999874
Q ss_pred ---------cCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccc----cccchhHHHHHHHHH
Q psy6222 552 ---------SGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLR----RTEDRLTEDCLLILQ 618 (863)
Q Consensus 552 ---------p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~----~~~~~~~e~~~~iL~ 618 (863)
|+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ....+.++.|+.||+
T Consensus 658 ~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~ 737 (767)
T cd01386 658 SEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILE 737 (767)
T ss_pred cccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998754321 112345788999998
Q ss_pred HhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHH
Q psy6222 619 CVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660 (863)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R 660 (863)
.+.. ...+|++|+||||||.++++.||++|
T Consensus 738 ~~~~------------~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 738 NLEL------------DKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HcCC------------CcceEEeecceEEecccHHHHHhccC
Confidence 7752 24689999999999999999999976
No 18
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1.6e-123 Score=1122.00 Aligned_cols=564 Identities=34% Similarity=0.555 Sum_probs=462.7
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccc-cccchhhhhhccCcchhccccccccccccCCccceEEEE-----
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVS-CSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV----- 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~----- 85 (863)
.+||++|+|+||+|||++++-++.|....+.+..+ ....|+++|+++|||||| ||||+|.+|+||||||||+.
T Consensus 84 ~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLea-FGnAkT~~N~nSSRfgk~~~l~f~~ 162 (689)
T PF00063_consen 84 QNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEA-FGNAKTPRNDNSSRFGKFIELQFDD 162 (689)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHH-HHEEEESSETTEESSEEEEEEEEET
T ss_pred cccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhh-hcccccccCCcccccceEEEEEecc
Confidence 57999999999999999999999998776655542 345899999999999999 99999999999999999974
Q ss_pred -----------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHH
Q psy6222 86 -----------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAW 141 (863)
Q Consensus 86 -----------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l 141 (863)
|||||+||+.+.. ||||||| +++|+|. ++++|+||+++ +...++.+|+++|+.+
T Consensus 163 ~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~--~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 163 SGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLN--DASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp TSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S---GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccceecccccccceeeccccccccchhhhhhhccchhhhhccccc--ccccccceecccccccCCccCHHHhhhh
Confidence 8999999998776 9999999 5667887 69999999985 5667888999999999
Q ss_pred HHHhccCCCC---chhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEe
Q psy6222 142 KACLGVLGIP---FMDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHN 218 (863)
Q Consensus 142 ~~Al~vLG~s---~~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~ 218 (863)
++||+.|||+ +.+||+|||||||||||+|.+.. +.+.+.+.+.+.++.||.||||+.++|.++|+.|++.
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~-------~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 313 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDE-------SDESAEVENSEELQKAAELLGVDSEELEKALTTRTIK 313 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEET-------TSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccc-------cccceeechHHHHHHhhhhcCCCHHHHHHHHhhcccc
Confidence 9999999998 46799999999999999999873 2345678899999999999999999999999999999
Q ss_pred cCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCC
Q psy6222 219 ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKS 298 (863)
Q Consensus 219 ~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~ 298 (863)
++++.++.++++++|.++||+|||+||++||+|||++||.++.. + +
T Consensus 314 ~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~--~------~-------------------------- 359 (689)
T PF00063_consen 314 VGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSP--S------E-------------------------- 359 (689)
T ss_dssp STTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----S------S--------------------------
T ss_pred ccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhcccc--c------c--------------------------
Confidence 99999999999999999999999999999999999999985532 0 0
Q ss_pred chhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccc-cCC
Q psy6222 299 SKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDY-VDN 377 (863)
Q Consensus 299 s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~-~DN 377 (863)
.....+||||||||||+|..|+||||||||||||||++|++++|+.||++|++|||.| ..++| .||
T Consensus 360 ------------~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~-~~i~~~~dn 426 (689)
T PF00063_consen 360 ------------SENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDW-PFIDFNPDN 426 (689)
T ss_dssp -------------S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC-SCS-GCGHH
T ss_pred ------------ccccccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccc-cccccccCc
Confidence 0134699999999999999999999999999999999999999999999999999999 48999 999
Q ss_pred chhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHh-cCCCCCCCCC---CCCCCceEEEeeeeeeeecchhhhhh
Q psy6222 378 VPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQH-RHNPRLFDPK---PVDARCFTIQHFAGRVLYDTSDFLET 452 (863)
Q Consensus 378 ~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~-~~~~~~~~~k---~~~~~~F~I~HyAG~V~Y~v~gfleK 452 (863)
++|||||+++|.|||++|||||.+ +++|++|++++...+ +.++.+.+++ ......|+|+||||+|+|+++||++|
T Consensus 427 ~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleK 506 (689)
T PF00063_consen 427 QPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEK 506 (689)
T ss_dssp HHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHH
T ss_pred hhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceecccccccc
Confidence 999999999999999999999998 789999999999999 7777776553 24568999999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCC-CCCccCCCCCCcchHHHHHHHHHHHHH
Q psy6222 453 NKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTS-HSDLLNGDEPVSTLTQDFHTRLDNLLR 531 (863)
Q Consensus 453 NrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s-~~~~~~g~~~~~Tv~~qfk~~L~~Lm~ 531 (863)
|+|.++++++++|+.|++ .|++.||.....+. ...... ...+..... ............||+.+|+.+|++||+
T Consensus 507 NrD~l~~~~~~ll~~S~n--~~v~~lf~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~ 581 (689)
T PF00063_consen 507 NRDPLSQDFVSLLRSSTN--SFVSSLFSSEATAT-SSSSSS--LSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMD 581 (689)
T ss_dssp HHE-S-HHHHHHHHTSSS--HHHHHHTHSHHH----S-S-S---BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCcC--cccccccccccccc-cccccc--cccccccccccccccccccccccccccccccHHHHHh
Confidence 999999999999998874 67999998865422 000000 000000000 000111223458999999999999999
Q ss_pred HHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccc--cccchh
Q psy6222 532 SLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLR--RTEDRL 609 (863)
Q Consensus 532 ~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~--~~~~~~ 609 (863)
+|++|+||||||||||+.+.|+.||..+|++||+++||+|++++++.|||+|++|.+|++||++|++..... ....+.
T Consensus 582 ~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~ 661 (689)
T PF00063_consen 582 TLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDD 661 (689)
T ss_dssp HHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSH
T ss_pred hhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999865422 124567
Q ss_pred HHHHHHHHHHhHhhcccCcccccccCccceEeeceEEEec
Q psy6222 610 TEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLS 649 (863)
Q Consensus 610 ~e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr 649 (863)
++.|+.||+.+.. ...+|++|+||||||
T Consensus 662 ~~~~~~ll~~~~~------------~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 662 KEACEALLEQLDL------------ESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHHHHTTS------------EGTCEEEESSEEEEC
T ss_pred HHHHHHHHHhCCC------------CccCEEECCcEEEEC
Confidence 8899999988742 247899999999997
No 19
>KOG0161|consensus
Probab=100.00 E-value=2e-121 Score=1143.74 Aligned_cols=604 Identities=27% Similarity=0.441 Sum_probs=532.1
Q ss_pred cCCCCcccccCCCCCCCCCCCceeecCCCCccc-c--cccchhhhhhccCcchhccccccccccccCCccceEEEE----
Q psy6222 13 EKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAV-S--CSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV---- 85 (863)
Q Consensus 13 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~---- 85 (863)
+|+++|+|+||+|||++++.+++|.+..++++. . .+..++++|+++|||||| ||||+|++|+||||||||+.
T Consensus 168 nQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLea-FGNa~tvrn~NssRFgkfirI~F~ 246 (1930)
T KOG0161|consen 168 NQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEA-FGNAKTVRNDNSSRFGKFIRIHFD 246 (1930)
T ss_pred CceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHH-hcChhhhcCCCCcccceeEEEecC
Confidence 689999999999999999999999988776541 1 225899999999999999 99999999999999999985
Q ss_pred ------------eeecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCccCCCHHHHHHHHHH
Q psy6222 86 ------------ALWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAW 141 (863)
Q Consensus 86 ------------~lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~~~~~dDa~~F~~l 141 (863)
||+||+||+.|.. ||||||| +..|.|+. .+.+|.|+.++...++++||+++|+.+
T Consensus 247 ~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~-~~~~Y~f~~~~~~~i~g~dd~eef~~t 325 (1930)
T KOG0161|consen 247 ATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSD-NVKDYKFLSNGESTIPGVDDAEEFQET 325 (1930)
T ss_pred CCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcc-cchhhhhhccccCCCCCcchHHHHHHH
Confidence 8999999999988 9999999 44566665 599999999998899999999999999
Q ss_pred HHHhccCCCC---chhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEe
Q psy6222 142 KACLGVLGIP---FMDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHN 218 (863)
Q Consensus 142 ~~Al~vLG~s---~~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~ 218 (863)
..||++|||+ +.+||+|+||||||||+.|... .+..++.+.+.+++..+|.||||+.++|.++++.+.+.
T Consensus 326 ~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~-------~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priK 398 (1930)
T KOG0161|consen 326 DEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQE-------PREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIK 398 (1930)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhcc-------ccccccCCCCchHHHHHHHHcCCCHHHHHHHhccccee
Confidence 9999999999 4579999999999999999986 23456788999999999999999999999999999999
Q ss_pred cCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCC
Q psy6222 219 ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKS 298 (863)
Q Consensus 219 ~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~ 298 (863)
++++.|....+.+|+..+..+|||++|+|||.|+|.+||.++.. .
T Consensus 399 vg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~---------------------~-------------- 443 (1930)
T KOG0161|consen 399 VGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDS---------------------K-------------- 443 (1930)
T ss_pred ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------c--------------
Confidence 99999999999999999999999999999999999999985421 0
Q ss_pred chhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccc-cCC
Q psy6222 299 SKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDY-VDN 377 (863)
Q Consensus 299 s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~-~DN 377 (863)
....+|||||||+|||+|+.||||||||||+||+||||||+|||..||++|.+|||.|+ .|+| .|-
T Consensus 444 ------------~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~-fidfG~Dl 510 (1930)
T KOG0161|consen 444 ------------QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWD-FIDFGLDL 510 (1930)
T ss_pred ------------cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCcee-eeccccch
Confidence 12357999999999999999999999999999999999999999999999999999994 9999 799
Q ss_pred chhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHh-cCCCCCCCCC-CCCCCceEEEeeeeeeeecchhhhhhcC
Q psy6222 378 VPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQH-RHNPRLFDPK-PVDARCFTIQHFAGRVLYDTSDFLETNK 454 (863)
Q Consensus 378 ~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~-~~~~~~~~~k-~~~~~~F~I~HyAG~V~Y~v~gfleKNr 454 (863)
++|||||++ |.||||+|||||.+ ++||.+|++||..+| +.++.|.+|+ .....+|.|.||||+|.|++.||++||+
T Consensus 511 q~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knk 589 (1930)
T KOG0161|consen 511 QPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNK 589 (1930)
T ss_pred hhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCC
Confidence 999999998 66999999999998 789999999999999 7888888884 2355799999999999999999999999
Q ss_pred CCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHh
Q psy6222 455 DVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLV 534 (863)
Q Consensus 455 D~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~ 534 (863)
|++.+.++.+++.|+ ..+|+.||.+... ++.. ..++... ....+..+.||++.++.||+.||.+|+
T Consensus 590 dpln~~v~~ll~~s~--~~~v~~l~~~~~~--~~~~-~~~~~~~---------~~~K~g~F~Tvs~~~keql~~Lm~~l~ 655 (1930)
T KOG0161|consen 590 DPLNDNVVSLLKQST--NKLVSSLFQDYAG--AAAA-AKGGEAL---------KKTKKGSFRTVSQLYKEQLNKLMTTLR 655 (1930)
T ss_pred CCchHHHHHHHHhcc--cHHHHHHhhhhhc--cchh-hhhhhhh---------cccCCcchhhHHHHHHHHHHHHHHHhc
Confidence 999999999999987 6689999987221 1100 0001000 001123467999999999999999999
Q ss_pred ccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHH
Q psy6222 535 HARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCL 614 (863)
Q Consensus 535 ~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~ 614 (863)
+|+|||||||.||..+.|+.+|.++|+.||+|.||||.|||.|.|||.||.|.+|..||.++.+. .......+.+.+|+
T Consensus 656 ~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~-~~~~~~~d~k~~~~ 734 (1930)
T KOG0161|consen 656 STHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAAD-EPKKGFSDGKKACE 734 (1930)
T ss_pred cCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhh-hccccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999955443 32333334478899
Q ss_pred HHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHh
Q psy6222 615 LILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLR-RNLEM 693 (863)
Q Consensus 615 ~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~~r-~~~~i 693 (863)
.|+..+..+ ...|++|.||||||+|++..||++|+..+...++.+|+.||||++|+.|.+++ +..+|
T Consensus 735 ~~~~~l~~d------------~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai 802 (1930)
T KOG0161|consen 735 KILEELLLD------------KNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAI 802 (1930)
T ss_pred HHHHHHhcc------------cceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988744 24599999999999999999999999999999999999999999999999977 77888
Q ss_pred hhccCCCC
Q psy6222 694 KSGNTGGT 701 (863)
Q Consensus 694 ~~~~~~~~ 701 (863)
.++|+-..
T Consensus 803 ~~iQ~N~r 810 (1930)
T KOG0161|consen 803 KVIQRNIR 810 (1930)
T ss_pred HHHHHHHH
Confidence 88875433
No 20
>KOG0163|consensus
Probab=100.00 E-value=1.8e-119 Score=1006.05 Aligned_cols=581 Identities=26% Similarity=0.422 Sum_probs=499.2
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEE-Ee----
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFK-VA---- 86 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~-~~---- 86 (863)
-+|+++|+|+||+|||++++..+-|..-.=.+ ...|+++|+.+|||||| ||||||+|||||||||||+ .+
T Consensus 143 ~SQSIIVSGESGAGKTEstK~vLrYLces~gs----ag~Iq~rileaNPiLEA-FGNAKT~RNNNSSRFGKFveiHf~dk 217 (1259)
T KOG0163|consen 143 LSQSIIVSGESGAGKTESTKAVLRYLCESWGS----AGPIQTRILEANPILEA-FGNAKTLRNNNSSRFGKFVEIHFDDK 217 (1259)
T ss_pred hcccEEEecCCCCCcchhHHHHHHHHHhccCC----CCcHHHHHhccChHHHH-hccchhhccCChhhccceEEEEEcCC
Confidence 47999999999999999999999998764332 34899999999999999 9999999999999999998 54
Q ss_pred -----------eecCceeeeehh----hhhHHHH--------HHHcCCCCCCCCCccccCCCCcc---------------
Q psy6222 87 -----------LWERHLIVSVVI----ILVFFSV--------TVKLHLESYTPLNLSYLQSGDTR--------------- 128 (863)
Q Consensus 87 -----------lleksrvv~~~~----fHIFYqL--------~~~l~L~~~~~~~y~YL~qg~~~--------------- 128 (863)
|||+|||+.|+. ||||||| +++|+|. .|++|+||+.||+.
T Consensus 218 ~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~--~pd~f~YL~rG~t~yFan~~t~~ki~~nr 295 (1259)
T KOG0163|consen 218 GQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLG--KPDDFRYLKRGCTQYFANAKTEQKIPGNR 295 (1259)
T ss_pred CceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccC--CchhhhHHhcchhhhccCcchhhcCcccc
Confidence 455555554444 9999987 7788988 69999999988742
Q ss_pred ------------CCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhh
Q psy6222 129 ------------QDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGEST 193 (863)
Q Consensus 129 ------------~~~~dDa~~F~~l~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~ 193 (863)
.+-+||..+|..+..||+.+|++. ..||+++|||||||||+|++..+++ .+++.+.-.++.+
T Consensus 296 ~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~dds---rGGC~v~n~seqs 372 (1259)
T KOG0163|consen 296 KSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDS---RGGCQVSNGSEQS 372 (1259)
T ss_pred cCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcC---CCceecccCchhh
Confidence 123689999999999999999984 5799999999999999999864332 4566777778889
Q ss_pred HHHhHhcCCCCHHHHHhhHceeEEec-----CCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCC
Q psy6222 194 LNSVASLLGVPSASLFRGITTRTHNA-----RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGT 268 (863)
Q Consensus 194 l~~aA~LLGv~~~~L~~aLt~r~~~~-----~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~ 268 (863)
|..+|+|||++.++|..+|+.|.|.+ +|.+|++|+.+.+|..+||||||++|++||+|||.+||+.+..
T Consensus 373 L~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF------ 446 (1259)
T KOG0163|consen 373 LTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF------ 446 (1259)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc------
Confidence 99999999999999999999998753 5789999999999999999999999999999999999985422
Q ss_pred CCCCCccccccchhhhhccccccccCCCCCchhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHH
Q psy6222 269 LSSDSNESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHF 348 (863)
Q Consensus 269 l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 348 (863)
..+..+||||||.|||-|.+||||||||||||||||+|
T Consensus 447 ------------------------------------------e~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~F 484 (1259)
T KOG0163|consen 447 ------------------------------------------EKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKF 484 (1259)
T ss_pred ------------------------------------------ccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHH
Confidence 01346999999999999999999999999999999999
Q ss_pred HhHhhhhhhHhhhhccCCcccccccccCCchhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCC
Q psy6222 349 YNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKP 427 (863)
Q Consensus 349 f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~ 427 (863)
||+.|++.|||.|++||+.+ .+|.|.||++||+||+.+..|||.|||||.++ +.+++.|....+..+++|-++-.|+.
T Consensus 485 FNerILkeEQElYekEGLnv-~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRk 563 (1259)
T KOG0163|consen 485 FNERILKEEQELYEKEGLNV-PEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRK 563 (1259)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCch
Confidence 99999999999999999999 59999999999999999999999999999998 78999999999998888887776643
Q ss_pred C---------CCCceEEEeeeeeeeecchhhhhhcCCCCcHHHHHHHHhccccccchhhhhhhhHHhhhccccCCCCccc
Q psy6222 428 V---------DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISF 498 (863)
Q Consensus 428 ~---------~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~ 498 (863)
. +...|.|+||||.|.|.+..|+|||.|.|+..+..|+..|+ ++++..||++....
T Consensus 564 SklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~--~~ll~sLF~S~s~t------------- 628 (1259)
T KOG0163|consen 564 SKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESD--NPLLVSLFPSGSST------------- 628 (1259)
T ss_pred hhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhcc--chHHHHHccCCCCC-------------
Confidence 2 34579999999999999999999999999999999999876 66799999763110
Q ss_pred ccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhc
Q psy6222 499 RISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578 (863)
Q Consensus 499 r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~ 578 (863)
+ .....|+-..-+|+.+|++||..||+.|++|..|||||||||..+.+.+||...++.||+|+||...+++|+.
T Consensus 629 -----~-a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~ 702 (1259)
T KOG0163|consen 629 -----S-AKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQH 702 (1259)
T ss_pred -----c-cccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhc
Confidence 0 0011233445689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHH
Q psy6222 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEM 658 (863)
Q Consensus 579 GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~ 658 (863)
|||.|..|.+.+.-|+-.+|.... .-+.+--|+.+.+.+.++ ..+|++|.||||||+|-+...++
T Consensus 703 GyPSR~~F~dLYamYkk~lPpkLa---rLdpRlFck~lF~aLgL~------------q~DfkFGlTKVFFr~GKFaEFDq 767 (1259)
T KOG0163|consen 703 GYPSRTSFADLYAMYKKVLPPKLA---RLDPRLFCKALFQALGLD------------QNDFKFGLTKVFFRPGKFAEFDQ 767 (1259)
T ss_pred CCCccccHHHHHHHHHhhCCHhhh---cCChHHHHHHHHHHhCCC------------cccccccceeEeecCcchHHHHH
Confidence 999999999999999987775431 123456788899888743 47899999999999998776654
Q ss_pred HHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy6222 659 LRS---------------------------------------DTRHRAAVLIQAVWRGTYARKRWPLL 687 (863)
Q Consensus 659 ~R~---------------------------------------~~~~~~a~~IQa~~Rg~l~Rk~~~~~ 687 (863)
+-. .++.++++.+|+..||||+||++.+.
T Consensus 768 iMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 768 IMKSDPETMLELVAKVNKWLVRSRWKKSQYGALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 210 12346788999999999999988763
No 21
>KOG0160|consensus
Probab=100.00 E-value=3.7e-114 Score=1015.30 Aligned_cols=581 Identities=30% Similarity=0.441 Sum_probs=514.4
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
++|+|+|+||||+|||++++-.++|++..+.+ ....+||++|+++|||+|| ||||+|+|||||||||||+.
T Consensus 93 ~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~Ea-fgNakT~rndnsSrFgK~iei~Fd~~ 169 (862)
T KOG0160|consen 93 VNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEA-FGNAKTTRNDNSSRFGKVIEITFDQQ 169 (862)
T ss_pred CCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchh-hccchhhhcccHHHhhhHHHHhhhhh
Confidence 46999999999999999999999999987766 4566999999999999999 99999999999999999963
Q ss_pred ----------eeecCceeeeehh----hhhHHHHHH-------HcCCCCCCCCCccccCCC-CccCCCHHHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSVTV-------KLHLESYTPLNLSYLQSG-DTRQDDVEDAARFQAWKA 143 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL~~-------~l~L~~~~~~~y~YL~qg-~~~~~~~dDa~~F~~l~~ 143 (863)
|||||+||+.+.. ||||||+.+ +|+|. ++..|.|++|+ +...++++|+++|..++.
T Consensus 170 ~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~--~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~ 247 (862)
T KOG0160|consen 170 GRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLG--TLRRFSYLNQSACVLISGVSDAEEFLSTTE 247 (862)
T ss_pred cccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcC--ccccceecccccchhhcccccHHHHHHHHH
Confidence 9999999998877 999999954 35555 68999999998 567899999999999999
Q ss_pred HhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEecC
Q psy6222 144 CLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNAR 220 (863)
Q Consensus 144 Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~~~ 220 (863)
||.++||+. +.||++||||||||||+|..... .......+ +.+..+|.|||++.+.|...|+.|.+.++
T Consensus 248 A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~-------~~~~~~~~-~~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 248 AMLFVGISESHQELIFRLLAAILHLGNIQFSSGVE-------ETSSSPVD-DHLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHhcCChHHHHHHHHHHHHHhccCceEeecccc-------cccccccc-hHHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999984 57999999999999999987521 12222333 38999999999999999999999999999
Q ss_pred CeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCCch
Q psy6222 221 GQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSK 300 (863)
Q Consensus 221 ~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~s~ 300 (863)
++.+..+++..+|...||++||.||++||+|+|.+||..+.. . +
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~--------~------------------------~---- 363 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGA--------N------------------------D---- 363 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhccccc--------C------------------------C----
Confidence 999999999999999999999999999999999999974311 0 0
Q ss_pred hhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCchh
Q psy6222 301 SMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPC 380 (863)
Q Consensus 301 s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~~~ 380 (863)
..+..+||||||||||.|+.|+||||||||+||+||+.|++|+|+.||++|.+|+|+| ..++|.||++|
T Consensus 364 ----------~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~W-s~ief~dNq~~ 432 (862)
T KOG0160|consen 364 ----------PKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDW-SGIEFRDNQEC 432 (862)
T ss_pred ----------CCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhcccc-ccccCcCccch
Confidence 1124699999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred hhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCCcH
Q psy6222 381 IDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459 (863)
Q Consensus 381 ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~ 459 (863)
+|+|++ |.|+++||||||++ +++|++|..||...+..+..+.+|+. ....|+|.||||+|+|++.+|++||||.+++
T Consensus 433 ~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr~-~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~ 510 (862)
T KOG0160|consen 433 LDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPRL-SRTDFRVAHYAGDVTYDTEGFLEKNRDYVSD 510 (862)
T ss_pred hhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCCC-CcCCcccccccCccccchhhhccCCccccCH
Confidence 999998 99999999999998 79999999999998888888888765 4578999999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhhhhhhHHhhhccccCCCCcccccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhccCCe
Q psy6222 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPH 539 (863)
Q Consensus 460 dlv~ll~~S~~~~~fi~~LF~~~l~~~~~~~~~~~~~s~r~s~~s~~~~~~g~~~~~Tv~~qfk~~L~~Lm~~L~~t~ph 539 (863)
++++++..++|. |+..+|.+... ..+ .....+||+++|+.+|..||++|+.|.||
T Consensus 511 el~~ll~~s~~~--~~~~~~~~~~~----------~~~-------------~~~~~~tv~s~fk~~l~~Lm~~l~~t~ph 565 (862)
T KOG0160|consen 511 ELIDLLLASDCH--FVAGLAPPLRA----------DSS-------------AKSKRSTVGSQFKLQLISLMETLNSTPPH 565 (862)
T ss_pred HHHhhhhhcccc--hHHHhccchhc----------chh-------------hhhhcccHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999988754 56666652110 000 11234699999999999999999999999
Q ss_pred eEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCccccccccchhHHHHHHHHHH
Q psy6222 540 FVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQC 619 (863)
Q Consensus 540 FIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~~~~~~~~~~~e~~~~iL~~ 619 (863)
||||||||..+.|..||...|++|||++|+||++||.+.|||.|++|.||+.||++|+| ... ..++ .+.|+.||+.
T Consensus 566 yircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~--~~~~-~~~~~~il~~ 641 (862)
T KOG0160|consen 566 YIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS--ASDD-LSLCKVILEK 641 (862)
T ss_pred CceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh--cccc-hHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 321 1222 7789999987
Q ss_pred hHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Q psy6222 620 VEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRNLEMKSGN 697 (863)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~~r~~~~i~~~~ 697 (863)
+.. ..|++|+||||||.|+...||.+|...+..+++.||+.+|+|+.||+|.++|+........
T Consensus 642 ~~~--------------~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~ 705 (862)
T KOG0160|consen 642 LGL--------------ELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAY 705 (862)
T ss_pred hch--------------hceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 652 2799999999999999999999999999999999999999999999999999766654433
No 22
>KOG4229|consensus
Probab=100.00 E-value=1.5e-78 Score=730.18 Aligned_cols=526 Identities=26% Similarity=0.359 Sum_probs=442.4
Q ss_pred ccCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhccccccccccccCCccceEEEE------
Q psy6222 12 NEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNASQLFLNFKV------ 85 (863)
Q Consensus 12 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NSSRFgkf~~------ 85 (863)
-.||+.|+|++|+|||++++-..++....+. ..++.++++|+.+||+||| ||||+|.+||||||||||+.
T Consensus 147 ~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEa-fgnA~t~~ndnssrfgk~i~~~~~~~ 222 (1062)
T KOG4229|consen 147 EDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEA-FGNAKTPRNDNSSRFGKYIKVNFRKT 222 (1062)
T ss_pred cceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHH-hcccCCcccCchhhhhheEEeccccC
Confidence 3699999999999999999999999877665 3456789999999999999 99999999999999999984
Q ss_pred ----------eeecCceeeeehh----hhhHHHHH--------HHcCCCCCCCCCccccCCC-CccC-CCHHHHHHHHHH
Q psy6222 86 ----------ALWERHLIVSVVI----ILVFFSVT--------VKLHLESYTPLNLSYLQSG-DTRQ-DDVEDAARFQAW 141 (863)
Q Consensus 86 ----------~lleksrvv~~~~----fHIFYqL~--------~~l~L~~~~~~~y~YL~qg-~~~~-~~~dDa~~F~~l 141 (863)
|++||+|++++.. |||||++. ..+.|. .+++|+||+++ ...+ ++.++.++|..+
T Consensus 223 g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~--~~e~y~yL~~~~~~~~~d~~~~~~~~~~l 300 (1062)
T KOG4229|consen 223 GIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLG--EAENYEYLEQGALFTISDGEDDVAQFIRL 300 (1062)
T ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhc--CCCCHHHhhccccccccchHHHHHhHHHH
Confidence 8999999888877 99999883 334444 48999999988 4566 899999999999
Q ss_pred HHHhccCCCCc---hhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHHhhHceeEEe
Q psy6222 142 KACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHN 218 (863)
Q Consensus 142 ~~Al~vLG~s~---~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~~aLt~r~~~ 218 (863)
..||.++||.. .+||+++|||||+|||+|..... ...+.+++.+...+..+|.||.++.+.|.++++.++..
T Consensus 301 ~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~-----~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~ 375 (1062)
T KOG4229|consen 301 EAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFAL-----DQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNV 375 (1062)
T ss_pred HHHHHHhccchhHHHHHHHhcccceeecceeHHhhhc-----ccccchhcccchHHHHHHHHhhcCHHHhhhhhccccee
Confidence 99999999983 57999999999999999987632 12345678899999999999999999999999999999
Q ss_pred cCCeEEEecCChhhhhHhHHhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCccccccchhhhhccccccccCCCCC
Q psy6222 219 ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKS 298 (863)
Q Consensus 219 ~~~e~v~~~~~~~~A~~~RDaLaK~LY~rLF~wIV~~IN~~~r~~~~~~~l~~d~~es~~~~~~~~~q~~s~~~~~~~~~ 298 (863)
.+|+.+..+++.++|.+.||++||+||++||.|||.+||.++.. ++ +.
T Consensus 376 ~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~------------~~-----~~--------------- 423 (1062)
T KOG4229|consen 376 TRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSP------------ES-----DI--------------- 423 (1062)
T ss_pred eehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCc------------cc-----cc---------------
Confidence 99999999999999999999999999999999999999985421 00 00
Q ss_pred chhhHhhhhhcccCccceeeeecCCCCCCCCCCchhHHHHhhhhhhHHHHHhHhhhhhhHhhhhccCCcccccccccCCc
Q psy6222 299 SKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNV 378 (863)
Q Consensus 299 s~s~~~l~~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eqeeY~~EGI~~~~~i~~~DN~ 378 (863)
.....||||||||||+|+.|+|||+|||||||+||.||++|||..||+||..|+|+| .+|.|.||.
T Consensus 424 -------------~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w-~~i~~~dN~ 489 (1062)
T KOG4229|consen 424 -------------SDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDW-RNIEFADNR 489 (1062)
T ss_pred -------------cccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCe-eeeeeeecc
Confidence 013589999999999999999999999999999999999999999999999999999 699999999
Q ss_pred hhhhhhhcccccccccchhhhcC-CCChhHHHHHHHhHhcCCCCCCCCCCCCCCceEEEeeeeeeeecchhhhhhcCCCC
Q psy6222 379 PCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVV 457 (863)
Q Consensus 379 ~~ldLi~~~~~Gll~lLDeE~~~-~gtd~tfl~kl~~~~~~~~~~~~~k~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l 457 (863)
.|+|+|..+|.||+.+||||+.+ +++|.+++.|++.+|+.+..++.++......|+|.||||.|.|++.||++||+|.+
T Consensus 490 ~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~ 569 (1062)
T KOG4229|consen 490 RRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTV 569 (1062)
T ss_pred chhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhh
Confidence 99999999999999999999998 89999999999999998888888887777899999999999999999999999999
Q ss_pred cHHHHHHHHhccccccchhhhhhhhHHhhhc---------cccCCCCcccccCCC--CCCCccCC-----CCCCcchHHH
Q psy6222 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYS---------LETVPRGISFRISPT--SHSDLLNG-----DEPVSTLTQD 521 (863)
Q Consensus 458 ~~dlv~ll~~S~~~~~fi~~LF~~~l~~~~~---------~~~~~~~~s~r~s~~--s~~~~~~g-----~~~~~Tv~~q 521 (863)
+.|++.+++.|. ..+++.+++....+... .....+...++...+ .+.+.... .....+++.+
T Consensus 570 ~~d~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 647 (1062)
T KOG4229|consen 570 RNDLVNLLRSSD--ESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPE 647 (1062)
T ss_pred hhhHHhhccccc--chhhcccCCCCCccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHhhhcccccc
Confidence 999999998764 34556666554322211 001111111111110 00000000 0012345555
Q ss_pred HHHHHHHHHHHHhccCCeeEeeccCCCCCCcCCCChH-HHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhc
Q psy6222 522 FHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRG-TVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLL 596 (863)
Q Consensus 522 fk~~L~~Lm~~L~~t~phFIRCIKPN~~k~p~~FD~~-~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L 596 (863)
++-++...++.|.+.++||.|||++|..-.+..++.. ....++...|..++....+.|+..++.|.+++++++..
T Consensus 648 ~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 648 DRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred CChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 5668888899999999999999999999999999977 89999999999999999999999999999988877743
No 23
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.51 E-value=0.00012 Score=48.25 Aligned_cols=21 Identities=52% Similarity=0.996 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy6222 665 HRAAVLIQAVWRGTYARKRWP 685 (863)
Q Consensus 665 ~~~a~~IQa~~Rg~l~Rk~~~ 685 (863)
+++|+.||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999984
No 24
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.66 E-value=0.002 Score=44.71 Aligned_cols=22 Identities=59% Similarity=0.972 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q psy6222 664 RHRAAVLIQAVWRGTYARKRWP 685 (863)
Q Consensus 664 ~~~~a~~IQa~~Rg~l~Rk~~~ 685 (863)
..++++.||+.||||++|++|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999983
No 25
>KOG4229|consensus
Probab=95.55 E-value=0.0036 Score=78.57 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHhccCCeeEeeccCCCCCCcCCCChHHHHHHhcccchhhHHHHHhcCCCcccchHHHHHHhhhccCcc
Q psy6222 521 DFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFC 600 (863)
Q Consensus 521 qfk~~L~~Lm~~L~~t~phFIRCIKPN~~k~p~~FD~~~V~~QLr~~GvlEtvri~r~GyP~R~~f~eF~~RY~~L~p~~ 600 (863)
++......++..+....+.|++|++-|..+....|+...|.+|+++.|+++..++++.+++..+++..|...+.+..|..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 45566777899999999999999999988889999999999999999999999999999999999999999999887722
Q ss_pred ccccccchhHHHHHHHHHHhHhhcccCcccccccCccceEeeceEEEechhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6222 601 KLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHR-AAVLIQAVWRGTY 679 (863)
Q Consensus 601 ~~~~~~~~~~e~~~~iL~~l~~~~~~~~~~~~~~~~~~~~iGkTkVFLr~~~~~~LE~~R~~~~~~-~a~~IQa~~Rg~l 679 (863)
. +... ......+. ....+++.|++++|+...-...++......... -+...|++++--.
T Consensus 874 ~-----~~v~---~~~~~~~~------------~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~ 933 (1062)
T KOG4229|consen 874 V-----DTVA---DEEFSTLS------------CNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTL 933 (1062)
T ss_pred c-----hhhc---hhheeecc------------cCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhh
Confidence 1 1110 11111111 124689999999999877666665544322222 3677888888888
Q ss_pred HHHhHHHHHHHHHhhh
Q psy6222 680 ARKRWPLLRRNLEMKS 695 (863)
Q Consensus 680 ~Rk~~~~~r~~~~i~~ 695 (863)
.|+.+.+++..-.+..
T Consensus 934 ~~~~~~~~~~~~v~~~ 949 (1062)
T KOG4229|consen 934 ERKGLLRLSEGSVLIQ 949 (1062)
T ss_pred ccccchhhcchhHHHH
Confidence 8998888885555444
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=90.17 E-value=0.17 Score=51.95 Aligned_cols=69 Identities=13% Similarity=-0.066 Sum_probs=48.5
Q ss_pred cCCCCcccccCCCCCCCCCCCceeecCCCCcccccccchhhhhhccCcchhcccc-ccccccccCCccceEEEE-eeecC
Q psy6222 13 EKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSAQLDDLIHLPGPLTEDAVL-KCLHARFNASQLFLNFKV-ALWER 90 (863)
Q Consensus 13 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~p~LEA~fG-na~T~rN~NSSRFgkf~~-~llek 90 (863)
+.|+...|.+|+|||.+-.+.. ...+.....+++ +++.....++ +. ++.|.+|.+|||+..|.. ++...
T Consensus 24 n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~~-~~~ll~~g~~-~R~~~~t~~N~~SSRsH~i~~i~v~~~ 94 (186)
T cd01363 24 NVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVTD-VIDLMDKGNA-NRTTAATAMNEHSSRSHSVFRIHFGGK 94 (186)
T ss_pred ceeEEEECCCCCcceEecCCCC-------CCCCcchHHHHH-HHHHHhhccc-cccccccCCCCccCcccEEEEEEEEEe
Confidence 5899999999999997765543 111111122333 6677777888 88 899999999999999964 44433
No 27
>KOG4427|consensus
Probab=86.86 E-value=1.1 Score=54.06 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6222 660 RSDTRHRAAVLIQAVWRGTYARKRWPL 686 (863)
Q Consensus 660 R~~~~~~~a~~IQa~~Rg~l~Rk~~~~ 686 (863)
-++++.+||..||++||||++|||+..
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567799999999999999999976
No 28
>KOG0942|consensus
Probab=79.08 E-value=2.5 Score=52.21 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCCC
Q psy6222 664 RHRAAVLIQAVWRGTYARKRWPLLRRNLEMKSGNTGGT 701 (863)
Q Consensus 664 ~~~~a~~IQa~~Rg~l~Rk~~~~~r~~~~i~~~~~~~~ 701 (863)
..+.|+++|+.||||++|++.+.+-|+.-.++..+++.
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~ 65 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRG 65 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45789999999999999999999888877777666554
No 29
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=76.55 E-value=6.6 Score=31.37 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=36.4
Q ss_pred ccCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCCeEeeeceeeec
Q psy6222 798 MPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCNTSIHVPFQFLE 845 (863)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (863)
.+|......+-.|++||.|.|+..+ ..|.+.++.+|.+=-||-.+.|
T Consensus 3 ~~y~~~~~dELs~~~Gd~i~v~~~~-~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 3 YDYEAQDPDELSFKKGDVITVLEKS-DDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp SCBCSSSTTB-EB-TTEEEEEEEES-STSEEEEEETTEEEEEEGGGEE
T ss_pred ccCCCCCcCEeeEcCCCEEEEEEeC-CCCEEEEEECCEEEEECHHhCC
Confidence 3565555569999999999999775 5999999999999888877654
No 30
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=63.08 E-value=16 Score=28.36 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=35.0
Q ss_pred cCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCC-eEeeeceeeec
Q psy6222 799 PYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCN-TSIHVPFQFLE 845 (863)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 845 (863)
+|-.....+-.|++||.|.|+.. ...|...++..+ .+=-||-.+++
T Consensus 7 ~~~~~~~~~l~~~~Gd~v~v~~~-~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 7 DYDARDPDELSFKKGDIIEVLEK-SDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred eeCCCCCCCCCCCCCCEEEEEEc-CCCCeEEEEECCCCEEEEccccCc
Confidence 45444445888999999999998 458999999888 66567766654
No 31
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=56.84 E-value=19 Score=28.16 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=36.1
Q ss_pred ccCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeC-CeEeeeceeeec
Q psy6222 798 MPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHC-NTSIHVPFQFLE 845 (863)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 845 (863)
.+|......+-.|++||.|.|+... ..|...++.. +.+=-||-.+++
T Consensus 9 ~~~~~~~~~~l~~~~Gd~v~v~~~~-~~~w~~~~~~~~~~G~vP~~~v~ 56 (58)
T smart00326 9 YDYTAQDPDELSFKKGDIITVLEKS-DDGWWKGRLGRGKEGLFPSNYVE 56 (58)
T ss_pred eeeCCCCCCCCCCCCCCEEEEEEcC-CCCeEEEEeCCCCEEEEchHHEE
Confidence 3455555457889999999999998 5899999988 666667766654
No 32
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=54.75 E-value=25 Score=28.49 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=34.0
Q ss_pred ccCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCCeEeeeceeeec
Q psy6222 798 MPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCNTSIHVPFQFLE 845 (863)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (863)
++|-.....+-.|++||.|.|++-....|...++++|..=-||-.+++
T Consensus 6 ~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~ 53 (55)
T PF07653_consen 6 FDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVE 53 (55)
T ss_dssp SSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEE
T ss_pred EEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEE
Confidence 344444445789999999999944444699999998888777777665
No 33
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=53.15 E-value=19 Score=29.82 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=26.8
Q ss_pred cCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCCeE
Q psy6222 799 PYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCNTS 836 (863)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (863)
.||=|-.-+..|.+||+|.|+..|..+..+.||-....
T Consensus 12 g~pFD~lQ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~ 49 (54)
T PF12913_consen 12 GYPFDYLQNSALHPGTPVYILHTSRDGAWAFVQTPFYS 49 (54)
T ss_dssp STT--TTEEEEE-TT-EEEEEEE-TTSSEEEEE-SS-E
T ss_pred CCCchhhhhcccCCCCCEEEEEECCCCCEEEEecCCee
Confidence 56666666889999999999999999999999987654
No 34
>PF15157 IQ-like: IQ-like
Probab=51.15 E-value=14 Score=33.14 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6222 664 RHRAAVLIQAVWRGTYARKR 683 (863)
Q Consensus 664 ~~~~a~~IQa~~Rg~l~Rk~ 683 (863)
+..-+.+||++||.|++|.-
T Consensus 46 Leskvkiiqrawre~lq~qd 65 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQD 65 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 44567889999999999955
No 35
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=48.69 E-value=3.2 Score=47.49 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred chhhhhccCCCCcccccCCCCCCCCCCCceeecCCCCccccccc
Q psy6222 6 ISADVLNEKCPPVPAVGGGGSTPHSPGDAEVTPRAAPVAVSCSA 49 (863)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 49 (863)
||-|+-----..++||||+||+.++..++.+.|..+++..|.+-
T Consensus 29 isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i 72 (534)
T COG4172 29 ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72 (534)
T ss_pred ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee
Confidence 55566666667899999999999999999999987777665443
No 36
>KOG0377|consensus
Probab=48.24 E-value=23 Score=40.80 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6222 659 LRSDTRHRAAVLIQAVWRGTYARKRWPL 686 (863)
Q Consensus 659 ~R~~~~~~~a~~IQa~~Rg~l~Rk~~~~ 686 (863)
.+..+--+||+.||+++|+|.||...++
T Consensus 11 ~~s~raikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 11 KKSTRAIKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446799999999999999976654
No 37
>KOG1118|consensus
Probab=46.80 E-value=1.5e+02 Score=33.08 Aligned_cols=63 Identities=17% Similarity=0.402 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCceeeecccccccCCcccccccCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCCeE
Q psy6222 767 DLERPPPVPPSRPYTVTGNSKISYPQTRVMKMPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCNTS 836 (863)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (863)
.-..+||--|+|+ -+++.=|+.| |..+|-++..++--|+.||.++|+---- -+.-..|-.|.|
T Consensus 288 ~is~~p~~~p~rs-----~s~~~~p~cr-alYdFepenEgEL~fkeGDlI~l~~QId-enWyeG~~~g~s 350 (366)
T KOG1118|consen 288 NISPKPPSTPNRS-----ASQMDQPCCR-ALYDFEPENEGELDFKEGDLITLTNQID-ENWYEGEKHGES 350 (366)
T ss_pred cCCCCCCCCCCcc-----cCcccchhhe-eeeccCCCCCCccCcccCceeeehhhcC-cchhhheecCcc
Confidence 3344555566666 4566777777 5667777777899999999999965432 445555555555
No 38
>PTZ00014 myosin-A; Provisional
Probab=43.19 E-value=29 Score=43.97 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6222 666 RAAVLIQAVWRGTYAR 681 (863)
Q Consensus 666 ~~a~~IQa~~Rg~l~R 681 (863)
.+++.||++||+|+.+
T Consensus 801 ~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 801 KSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 39
>KOG0160|consensus
Probab=38.82 E-value=39 Score=42.62 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhhhccCCCCC
Q psy6222 664 RHRAAVLIQAVWRGTYARKRWPLLR-RNLEMKSGNTGGTS 702 (863)
Q Consensus 664 ~~~~a~~IQa~~Rg~l~Rk~~~~~r-~~~~i~~~~~~~~~ 702 (863)
+..+|+.||+.||+|+.|++|..++ ....+++..+....
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~ 756 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLA 756 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6779999999999999999999988 45556666665554
No 40
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=34.54 E-value=58 Score=27.77 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=30.0
Q ss_pred cccCCCeEEEeeccCCCCeeeeeeCCeEeeeceee
Q psy6222 809 TLGKGEAVVVVGASSRRGHLVVEHCNTSIHVPFQF 843 (863)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (863)
-|.+|..|+|+...+..|.++|+.+++.+-++...
T Consensus 32 Gl~~G~~i~v~~~~~~~~~~~i~~~~~~i~L~~~~ 66 (74)
T PF04023_consen 32 GLTPGSEITVIRKNPFGGPVVIKVDGSRIALSREI 66 (74)
T ss_dssp T-STTEEEEEEEEETTSSEEEEEETTEEEEESHHH
T ss_pred CCCCCCEEEEEEeCCCCCCEEEEECCEEEEcCHHH
Confidence 47889999999988889999999999998887643
No 41
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=34.45 E-value=45 Score=25.11 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy6222 667 AAVLIQAVWRGTYARKRW 684 (863)
Q Consensus 667 ~a~~IQa~~Rg~l~Rk~~ 684 (863)
|+.+||-+||.|..||.-
T Consensus 11 At~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999888654
No 42
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=32.42 E-value=89 Score=35.37 Aligned_cols=87 Identities=29% Similarity=0.482 Sum_probs=59.1
Q ss_pred CCCCCCCCCCceeeecccccccCCcccccccCCCCCCC-CccccCCCeEEEeeccC-------------CCCeeeeee--
Q psy6222 769 ERPPPVPPSRPYTVTGNSKISYPQTRVMKMPYPEDGKG-DVTLGKGEAVVVVGASS-------------RRGHLVVEH-- 832 (863)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-- 832 (863)
..+-|..+||||-|....--+|=.+ |.+... -.-|+.|+.|+||.+.- +|-.|+||-
T Consensus 214 t~~~pYva~RPFRVNAGaVhaYv~~-------pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~ 286 (344)
T PRK02290 214 TEENPYVASRPFRVNAGAVHAYVRV-------PGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEY 286 (344)
T ss_pred cccCCCccCCCeeEecCcceeEEEc-------CCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEe
Confidence 4456778899999998887777443 333222 55689999999998763 466777776
Q ss_pred CCeEeee----------------ceeeeccccCC-----CCCcccccCccC
Q psy6222 833 CNTSIHV----------------PFQFLELKPGP-----ALFQETHMGTRV 862 (863)
Q Consensus 833 ~~~~~~~----------------~~~~~~~~~~~-----~~~~~~~~~~~~ 862 (863)
.|.++.+ |...++||++. .....+|+|.++
T Consensus 287 ~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~~~~~RHfG~~i 337 (344)
T PRK02290 287 GGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYLEEAARHFGMAI 337 (344)
T ss_pred CCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCccccccee
Confidence 4666554 56777888543 345666777654
No 43
>KOG1419|consensus
Probab=30.65 E-value=51 Score=39.29 Aligned_cols=29 Identities=38% Similarity=0.446 Sum_probs=21.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy6222 654 QQLEMLRSDT----RHRAAVLIQAVWRGTYARK 682 (863)
Q Consensus 654 ~~LE~~R~~~----~~~~a~~IQa~~Rg~l~Rk 682 (863)
..=|+.|.+. +.-||..||++||-|.+-.
T Consensus 325 KVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 325 KVQEQHRQKHFNRRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhccc
Confidence 3446666544 3568999999999998754
No 44
>PF11535 Calci_bind_CcbP: Calcium binding; InterPro: IPR020994 CcbP is a Ca(2+) binding protein found in bacteria which is thought to bind Ca(2+) by protein surface charge. When bound to Ca(2+), the protein becomes more compact and the level of free calcium decreases. Within the bacteria, Ca(2+) has a role in the early stages of heterocyst differentiation. The free Ca(2+) concentration which is regulated by CcbP is critical for the differentiation process []. Calcium signalling is widespread in bacterial species, and prokaryotic cells like eukaryotes are equipped with all the elements to maintain Ca2+ homeostasis [].; PDB: 2P0P_A 2K2V_A 2P0Q_A.
Probab=29.12 E-value=30 Score=32.60 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=29.3
Q ss_pred CccccCCCeEEEeeccCCCC-----eeeeeeCCeEeeeceeeec
Q psy6222 807 DVTLGKGEAVVVVGASSRRG-----HLVVEHCNTSIHVPFQFLE 845 (863)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 845 (863)
...++.||+|.|+|-++.-+ ...|++++..+.||+-=+|
T Consensus 43 ~s~~~~~~~V~V~gm~~~~~~~~~I~V~v~~~~~~~~vpL~dLe 86 (106)
T PF11535_consen 43 KSPLSEGDEVEVLGMADEDDCEYGIFVEVRRDRRKFTVPLSDLE 86 (106)
T ss_dssp TTTCEEEEEEEEEEE--HHHHTTS-EEEEEESSSEEEEEGGGEE
T ss_pred cCCCccCcEEEEEEecCccccccceEEEEEeCCeEEEEEhHHcc
Confidence 34688999999999998655 4568898889999976554
No 45
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=28.45 E-value=61 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHh
Q psy6222 138 FQAWKACLGVLGIPFMDVVRVLAAVLL 164 (863)
Q Consensus 138 F~~l~~Al~vLG~s~~dIfrVLAAILH 164 (863)
.++...||..|||+..++.+++..++-
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 467889999999999999999999985
No 46
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=27.62 E-value=1e+02 Score=30.83 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHhhccceEEeccCCCCCCCCcceEEecChhhHHHhHhcCCCCHHHHH
Q psy6222 134 DAARFQAWKACLGVLGIPFMDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLF 209 (863)
Q Consensus 134 Da~~F~~l~~Al~vLG~s~~dIfrVLAAILHLGNI~F~~~~~~~~~~~~~~~~~v~~~~~l~~aA~LLGv~~~~L~ 209 (863)
|..--+.+++.|+.-|+++..--.-||-||.|.--.+..+- . | ... =+-+++..+|..||++.++|.
T Consensus 3 ~~~~~erV~~Ll~~~Gi~kr~~~s~LA~iL~Is~ssa~RKL--~---G-~~~---ftl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 3 DQAIAERVRELLDRKGIPKRKHASELADILGISYSSAYRKL--N---G-KSP---FTLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred hHHHHHHHHHHHHHcCCcchhhHHHHHHHHCCCHHHHHHHh--c---C-CCC---CCHHHHHHHHHHhCcCHHHHH
Confidence 33445778889999999976666889999977655554331 1 1 111 134789999999999999998
No 47
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=24.88 E-value=8.2 Score=43.01 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=28.7
Q ss_pred chhhhhccCCCCcccccCCCCCCCCCCCceeecC
Q psy6222 6 ISADVLNEKCPPVPAVGGGGSTPHSPGDAEVTPR 39 (863)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~ 39 (863)
+|-++--.++.-|+||||+||+..++.++-+.|.
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~ 57 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 4555556688899999999999999999999984
No 48
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=23.75 E-value=1.7e+02 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=29.2
Q ss_pred ccCCCCCCCCccccCCCeEEEeeccCCCCeeeeeeCC
Q psy6222 798 MPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCN 834 (863)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (863)
.+|......+-.+++||.|.|+..+.. |-..|++.+
T Consensus 4 ydf~~~~~~eLs~~~Gd~i~v~~~~~~-~Ww~~~~~~ 39 (48)
T PF00018_consen 4 YDFDAEDPDELSFKKGDIIEVLEKSDD-GWWKVRNES 39 (48)
T ss_dssp SCBETSSTTBSEB-TTEEEEEEEESSS-SEEEEEETT
T ss_pred eeeCCCCCCEEeEECCCEEEEEEecCC-CEEEEEECC
Confidence 456666656899999999999999885 999999885
No 49
>KOG4078|consensus
Probab=23.69 E-value=53 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=36.1
Q ss_pred CCcccccccchhhhhhccCcchhccccccccccccCC---c--cceEEEEeeecCceeeeehhhhh
Q psy6222 41 APVAVSCSAQLDDLIHLPGPLTEDAVLKCLHARFNAS---Q--LFLNFKVALWERHLIVSVVIILV 101 (863)
Q Consensus 41 ~~~~~~~~~~i~~~i~~~~p~LEA~fGna~T~rN~NS---S--RFgkf~~~lleksrvv~~~~fHI 101 (863)
.++++...+-|+.-+..+.|.-|+ -+|- | |-.|++..=.-++++|.+.+|||
T Consensus 37 ~ts~Ggfa~a~dr~~~~vtp~q~~---------~~nqsFASlLRnSkl~qlg~a~gklV~GkIfhi 93 (173)
T KOG4078|consen 37 KTSAGGFASAIDRFLDKVTPLQEA---------QPNQSFASLLRNSKLMQLGDAKGKLVIGKIFHI 93 (173)
T ss_pred cccccchHHHHHHHhccCCCcccC---------CchhhHHHHHhcCccccccCcCCcEEEeeeeee
Confidence 344444444555556667777777 2222 2 77899988889999999999998
No 50
>PRK09752 adhesin; Provisional
Probab=20.96 E-value=78 Score=41.20 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=7.0
Q ss_pred eceEEEech
Q psy6222 642 GKRHIFLSE 650 (863)
Q Consensus 642 GkTkVFLr~ 650 (863)
|.|.|.+..
T Consensus 849 G~T~V~V~N 857 (1250)
T PRK09752 849 GNTTVVVNS 857 (1250)
T ss_pred CcEEEEEEc
Confidence 788888863
Done!