RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6222
(863 letters)
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 422 bits (1088), Expect = e-137
Identities = 172/558 (30%), Positives = 243/558 (43%), Gaps = 88/558 (15%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
KL L+ P + YL Q G D ++DA F+ K L LG + R+LAA+L
Sbjct: 205 KLGLKR--PESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAIL 262
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGN++F S V L+ A LLG+ L +T + G++
Sbjct: 263 HLGNIEF-----KSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEV 317
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
+ + +RD LAKALY R IV R NS +L
Sbjct: 318 ITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINS---------SLKPKDG--------- 359
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
IGILD+FGFE + + E LCIN E
Sbjct: 360 -----------------------------RSLFIGILDIFGFEIFEKNSFEQLCINYANE 390
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-R 402
+Q F+N H+FK E ++E I +D+ DN IDLI GLLS+LD EC +
Sbjct: 391 KLQQFFNQHVFKLEQEEYQEEGI-DWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPK 449
Query: 403 GTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLV 462
GT ET+L K+ + + N + K FTI+H+AG V YD FLE NKDV+ +LV
Sbjct: 450 GTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELV 509
Query: 463 SVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDF 522
S+ + F LF SEL S T + + T+ F
Sbjct: 510 SLLKSSSNPFIR--ELFESELSKTG------------NSSTGSTSSKGKKKKGQTVGSQF 555
Query: 523 HTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPH 582
T LD L+ +L PHF+RC+K N + FD G V++Q+R L +LET+ + G+
Sbjct: 556 RTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615
Query: 583 RMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIG 642
R+ F F +RYR LAP + + + +CLL L + ++ W +G
Sbjct: 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKD--------------EWQVG 661
Query: 643 KRHIFLSEGIRQQLEMLR 660
K +FL EG +LE +R
Sbjct: 662 KTKVFLKEGQLSELEKMR 679
Score = 31.1 bits (71), Expect = 3.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLF 80
DDL LP L E VL L R+ ++
Sbjct: 3 DDLASLPH-LNEATVLNNLRQRYKKDLIY 30
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 329 bits (847), Expect = e-101
Identities = 159/558 (28%), Positives = 233/558 (41%), Gaps = 99/558 (17%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
+L L+S P + YL Q G D ++DA F+ + VLG + ++LAA+L
Sbjct: 213 ELGLKS--PEDYRYLNQGGCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAIL 270
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGN++F G N V + L++ A LLGV L + +T R G++
Sbjct: 271 HLGNIEF-----EEGRNDNA-ASTVKDKEELSNAAELLGVDPEELEKALTKRKIKTGGEV 324
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
+ + + RD LAKALY R +V+R N
Sbjct: 325 ITKPLNVEQALDARDALAKALYSRLFDWLVKRINQ------------------------- 359
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
+L+ IG+LD++GFE + + E LCIN E
Sbjct: 360 --------------------SLSFKDGSTY--FIGVLDIYGFEIFEVNSFEQLCINYANE 397
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-R 402
+Q F+N H+FK E E I +D+ DN CIDLI G+LS+LD EC +
Sbjct: 398 KLQQFFNQHVFKLEQEEYEREGIDWT-FIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456
Query: 403 GTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLV 462
GT +T+L K+ H+ +P PK F I+H+AG V YD + FLE NKD + DDL+
Sbjct: 457 GTDQTFLEKLNQHHKKHPHFSKPKKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLI 516
Query: 463 SVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDF 522
+ LF S + T+ F
Sbjct: 517 ELLQSSKN--PLIASLFPSG-----------------------VSNAGSKKRFQTVGSQF 551
Query: 523 HTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPH 582
+L+ L+ +L PHF+RC+K N + G FD V+ Q+R L VLE + + G+P+
Sbjct: 552 KEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLENIRIRRAGFPY 611
Query: 583 RMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIG 642
R+ F F RYR+L P + C +LQ + +G
Sbjct: 612 RLPFDEFLQRYRVLLPDTWP-PWGGDAKKACEALLQ----SLGLDE--------DEYQLG 658
Query: 643 KRHIFLSEGIRQQLEMLR 660
K +FL G +LE LR
Sbjct: 659 KTKVFLRPGQLAELEELR 676
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 258 bits (661), Expect = 5e-75
Identities = 151/500 (30%), Positives = 216/500 (43%), Gaps = 74/500 (14%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
+L L+ P + +YL QSG ++DA F+ ++ L ++G + RVLAA+L
Sbjct: 207 ELGLKD--PKDYAYLSQSGCYTVPGIDDAEEFKDTRSALKIIGFTDEEQRSIFRVLAAIL 264
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGN++F N V L +A LLGV L + + R +
Sbjct: 265 HLGNIKFK-----QDQNEEQAVV--EDTEELEIIAGLLGVDPEELEKALLKRRIKTGRET 317
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
V + + RD LAKA+Y R IV + N LS+ ++
Sbjct: 318 VTKPQNVEQARYARDALAKAIYSRLFDWIVGKINE---------ALSAKLQKAAA----- 363
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
IG+LD++GFE + + E LCIN E
Sbjct: 364 --------------------------------FIGVLDIYGFEIFEKNSFEQLCINYANE 391
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVEVDYV-DNVPCIDLISSLRTGLLSMLDVECSL- 401
+Q F+N HMFK E E I +DY DN CIDLI G+LS+LD EC
Sbjct: 392 KLQQFFNHHMFKLEQEEYVREGIAW-TFIDYGLDNQACIDLIEKKPPGILSLLDEECRFP 450
Query: 402 RGTAETYLGKVKAQHRHNPRLFDPKPVDAR---CFTIQHFAGRVLYDTSDFLETNKDVVP 458
+ T +T+L K+ F KP + FT++H+AG V Y+ + FLE NKD +
Sbjct: 451 KATDQTFLEKLLDTFSSKHPHF-SKPRFGQGDTSFTVKHYAGDVEYNATGFLEKNKDPLF 509
Query: 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTL 518
DDL+S+ + LF E E + + E T
Sbjct: 510 DDLISLLKSSSD--PLVLELFPEEELDE---EEFAGRYARLGCGKGKDGKKSNFE---TA 561
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
F L NL+++L PHFVRC+K N + +G FD V+ Q+R L VLE + +
Sbjct: 562 GSQFKESLGNLMKTLRSTNPHFVRCIKPNEKKAAGPFDSSLVLHQLRCLGVLEGIRIRRA 621
Query: 579 GYPHRMRFKAFNARYRLLAP 598
G+P+R+ F F RYRLLAP
Sbjct: 622 GFPNRITFDEFLQRYRLLAP 641
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 253 bits (647), Expect = 4e-73
Identities = 157/567 (27%), Positives = 240/567 (42%), Gaps = 93/567 (16%)
Query: 99 ILVFFSVTVKLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMD 154
+L S K L+ + YL Q G + +DA F ++ + VL +
Sbjct: 193 MLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWE 252
Query: 155 VVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITT 214
+ ++LAA+L +GN++F ++ +N EV + L VA LLGVP L +T+
Sbjct: 253 IFKLLAAILHIGNLRF---EATEVDNLAACEV--DDTPNLQRVAQLLGVPIQDLMDALTS 307
Query: 215 RTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSN 274
RT RG+ V + + RD K +Y R IVR+ N+
Sbjct: 308 RTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINA---------------- 351
Query: 275 ESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLE 334
+++ + SIG+LD+FGFE+ + E
Sbjct: 352 -AIYKPVQQSRN-----------------------------SIGVLDIFGFENFDVNSFE 381
Query: 335 HLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSM 394
LCIN E +Q F+ H+FK E E+I+ +++VDN +DLI+ ++S+
Sbjct: 382 QLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQ-HIEFVDNQDALDLIAIKPLNIMSL 440
Query: 395 LDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETN 453
+D E +GT +T L K+ +QH + PK F I HFAG V YDT FLE N
Sbjct: 441 IDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKN 500
Query: 454 KDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDE 513
+D DL + F LK ++ + + + P
Sbjct: 501 RDTFSGDLSQLVQSSKNKF----------LKQIFQADVEMGAETRKKKP----------- 539
Query: 514 PVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETV 573
TL+ F LD L+R+L +P F+RC+K N + FDR +RQ+R ++ET+
Sbjct: 540 ---TLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETI 596
Query: 574 NLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQS 633
+ GYP R F+ F RYR+L P K +D L I + V LL
Sbjct: 597 RIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAV--------LLADD 648
Query: 634 EVSTSWVIGKRHIFLSEGIRQQLEMLR 660
+ W +GK +FL + LE R
Sbjct: 649 D----WQLGKTKVFLKDHHDLLLEQER 671
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 260 bits (666), Expect = 2e-72
Identities = 160/583 (27%), Positives = 242/583 (41%), Gaps = 100/583 (17%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGI---PFMDVVRVLAAVL 163
L L++ P + YL Q G + D ++DA F+ L +GI + ++LAA+L
Sbjct: 274 LLLLQN--PKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAIL 331
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
+GN++F K +G + S L+ LLG+ + + + R G+
Sbjct: 332 HIGNIEF--KEDRNGA------AIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEW 383
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
+ + + RD LAKALY IV R N
Sbjct: 384 IVVPLNLEQALAIRDSLAKALYSNLFDWIVDRIN-------------------------- 417
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
+L+++ A IG+LD++GFE + + E LCIN E
Sbjct: 418 -------------------KSLDHS--AAASNFIGVLDIYGFEIFEKNSFEQLCINYTNE 456
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLI-SSLRTGLLSMLDVECSL- 401
+Q F+N HMFK E E I +DY DN PCIDLI G+LS+LD EC +
Sbjct: 457 KLQQFFNQHMFKLEQEEYVKEGIEWSF-IDYFDNQPCIDLIEKKNPLGILSLLDEECVMP 515
Query: 402 RGTAETYLGKVKAQHRHNP-RLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDD 460
T E++ K+ + N F F ++H+AG V YD FL+ NKD + DD
Sbjct: 516 HATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDD 575
Query: 461 LVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQ 520
L+ + T +E + + S P TL
Sbjct: 576 LLELLKAST-----------NEFVSTLFDDEENIE-SKGRFP--------------TLGS 609
Query: 521 DFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGY 580
F L++L+ +L +PH++RC+K N ++ FD V+ Q+R VLET+ + G+
Sbjct: 610 RFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
Query: 581 PHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWV 640
P R F F RYR+L+P E ED ++ + EE + S+ +
Sbjct: 670 PSRWTFDEFVQRYRILSPSKS-WTGEYTWKEDTKNAVKSILEELVID--------SSKYQ 720
Query: 641 IGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKR 683
IG +F G+ LE +R A IQ RG Y R+R
Sbjct: 721 IGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRR 763
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 229 bits (585), Expect = 2e-64
Identities = 157/568 (27%), Positives = 242/568 (42%), Gaps = 101/568 (17%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
+LHL +YL Q G + V+DA F A L +LGI MD+ ++LAA+L
Sbjct: 210 ELHLGH--ADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALL 267
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQ- 222
LGN++ ++ N+ + + L LLGV ++ L + + R R +
Sbjct: 268 HLGNIEI----EATRNDSSSISPK---DENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320
Query: 223 LVKSLCDANMSNMTRDCLAKALYCR----TVATIVRRANSLKRLGSTLGTLSSDSNESVH 278
+VK L + + RD LAK +Y + V I N+S++
Sbjct: 321 IVKPL-TKEQAIVARDALAKHIYSKLFDWIVDVI---------------------NKSLN 358
Query: 279 NQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCI 338
Q S IG+LD++GFE + + E CI
Sbjct: 359 TGEVKKKQT-------------SF--------------IGVLDIYGFETFEKNSFEQFCI 391
Query: 339 NLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVE 398
N E +Q +N H+FK E E I +D+ DN PCIDLI S + G+LS+LD E
Sbjct: 392 NYANEKLQQQFNQHVFKLEQEEYLKEGI-EWTFIDFYDNQPCIDLIES-KLGILSLLDEE 449
Query: 399 CSL-RGTAETYLGKVKAQHRHNPRLFDPKP-VDARCFTIQHFAGRVLYDTSDFLETNKDV 456
C L +G+ E++ K+ + KP FT++HFA V YD FLE N+D
Sbjct: 450 CRLPKGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDT 509
Query: 457 VPDDLVSVFHKQTCIFGFATHLFGSEL---KALYSLETVPRGISFRISPTSHSDLLNGDE 513
V D+ + V F + + + S ++ P H
Sbjct: 510 VSDEHLDVLKASK--NPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQHK------- 560
Query: 514 PVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETV 573
T+ F + L L+ +L PH++RC+K N + KF+ V++Q+R+ VLET+
Sbjct: 561 --PTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETI 618
Query: 574 NLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQ-CVEEEHMKSPLLTQ 632
+ A G+P R ++ F RYR+L P +L +++ + C IL +E+E
Sbjct: 619 RISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQL--CENILTKVIEDE--------- 667
Query: 633 SEVSTSWVIGKRHIFLSEGIRQQLEMLR 660
+ GK IF G LE LR
Sbjct: 668 ----DKYQFGKTKIFFRAGQVAFLEKLR 691
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 222 bits (566), Expect = 3e-62
Identities = 166/571 (29%), Positives = 249/571 (43%), Gaps = 143/571 (25%)
Query: 108 KLHLESYTPLNLSYLQSGDTR--QDDVEDAA---RFQAWKACLGVLGIPFMD-----VVR 157
KL ES TP YLQ+ TR QD + +F+ + C V+G F D V R
Sbjct: 208 KLP-ESKTP---RYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIG--FTDEEVGSVYR 261
Query: 158 VLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTH 217
+LAA+L LG+++F S + + V+ + L + ASLL + S L +T+
Sbjct: 262 ILAAILNLGDIEF----GSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCV 317
Query: 218 NARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESV 277
RG+ + + RD +AKALY R + IV R NSL L D N
Sbjct: 318 VTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSL---------LKHDRN--- 365
Query: 278 HNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLC 337
S SS + ++GILD+FGFE+ K + E LC
Sbjct: 366 -----------------ASNSSDQL-------------NVGILDIFGFENFKKNSFEQLC 395
Query: 338 INLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDV 397
IN+ E +Q+++N H+F + +E + + + V+Y DN P +D+ GLL++LD
Sbjct: 396 INIANEQIQYYFNQHIFAWEQQEYLNEGVDARL-VEYEDNRPLLDMFLQKPLGLLALLDE 454
Query: 398 ECSL-RGTAETYLGK----VKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLET 452
E + T +T + K +K++ P+ F I H+AG+VLY+ S FLE
Sbjct: 455 ESRFPQATDQTLVEKFEDNLKSKFFWRPK------RVELSFGIHHYAGKVLYNASGFLEK 508
Query: 453 NKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGD 512
N+D +P D+V + L S+ A Y FR S
Sbjct: 509 NRDFLPADIVLL-------------LRSSQTVASY----------FRYS----------- 534
Query: 513 EPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLET 572
L +LL +V +PHFVRC+K N + KFD V++Q+R +LET
Sbjct: 535 -------------LMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILET 581
Query: 573 VNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLT---EDCLLILQCVEEEHMKSPL 629
+ G+ HR+ F F RY LA R E+ E C LIL+ + ++
Sbjct: 582 ARIRRQGFSHRILFANFIRRYCFLA-----YRFEEEPVSSPESCALILEKAKLDN----- 631
Query: 630 LTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660
W +GK +FL +QL ++R
Sbjct: 632 ---------WALGKTKVFLKYYHVEQLNLMR 653
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 220 bits (563), Expect = 2e-61
Identities = 133/500 (26%), Positives = 205/500 (41%), Gaps = 83/500 (16%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVLL 164
L L P + YL G+ V+DA F+ +LG + +++AA+L
Sbjct: 219 MLLLTGN-PNDYRYLSQGELTIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILH 277
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
LGN++F + ++G + A LLGV SA L + + + V
Sbjct: 278 LGNIKFKQRQREEQAE-------LDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWV 330
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ + + LAKALY R +V+R N TL +
Sbjct: 331 TKGQNVEQVSFSVGALAKALYERLFLWLVKRINK---------TLDTKQ----------- 370
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
IG+LD+ GFE + E LCIN E
Sbjct: 371 ---------------------------QRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEK 403
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVEVDY-VDNVPCIDLISSLRTGLLSMLDVECSL-R 402
+Q F+N HMF E + E I +D+ +D P IDLI G+LS+LD EC +
Sbjct: 404 LQQFFNHHMFVLEQEEYQREGIEWTF-IDFGLDLQPTIDLIEKNPMGILSLLDEECVFPK 462
Query: 403 GTAETYLGKVKAQHRHNPRLFDPKPV-DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDL 461
T +T++ K+ H + PK F++ H+AG V Y+ +LE NKD + D++
Sbjct: 463 ATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNV 522
Query: 462 VSVFHKQT---CIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTL 518
V + K + F + S +G SFR T+
Sbjct: 523 VGLLKKSSDKLVAELFKDYAEASGDGGG-GGGKKKKGGSFR-----------------TV 564
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
+Q + +L+ L+ +L PHFVRC+ N + GK D V+ Q+R VLE + +
Sbjct: 565 SQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRK 624
Query: 579 GYPHRMRFKAFNARYRLLAP 598
G+P+R+ + F RY +LAP
Sbjct: 625 GFPNRILYAEFRQRYEILAP 644
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 212 bits (541), Expect = 2e-58
Identities = 143/514 (27%), Positives = 226/514 (43%), Gaps = 95/514 (18%)
Query: 158 VLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTH 217
VL+AVLLLGNV + +++ + + V ++ ++ LL V +L +T +
Sbjct: 267 VLSAVLLLGNVTYKKRATYHRDES----LEVGNPEVVDLLSQLLKVKRETLMEALTKKRT 322
Query: 218 NARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESV 277
+ + + + RD +AK LY IV R N ++
Sbjct: 323 VTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRIN-----------------HAL 365
Query: 278 HNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKP-SQLEHL 336
N+ DVA + SIG+LD+FGFED + E L
Sbjct: 366 LNKDDVA---------------------------VSGLSIGVLDIFGFEDFGRCNSFEQL 398
Query: 337 CINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLD 396
CIN E +Q+++N H+FK E + E I + ++Y DNV CI L S TGLL +LD
Sbjct: 399 CINYANEQLQYYFNQHIFKLEQEEYQGEGI-TWTNIEYTDNVGCIQLFSKKPTGLLYLLD 457
Query: 397 VECSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKD 455
E + T++T L K QH+ N + ++ V F IQH+AG+V Y DF E N D
Sbjct: 458 EESNFPHATSQTLLAKFNQQHKDN-KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMD 516
Query: 456 VVPDDLVSVFHKQTCIFGFATHLFGSELKALYS---LETVPRGISFRISPTSHSDLLNGD 512
++ D+V++ + L G + A++ L R ++
Sbjct: 517 LMRQDIVALLKGSDS--SYVRELIGMDPVAVFRWAVLRAAFRAMA--------------- 559
Query: 513 EPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLET 572
+++ F T L+ L+ +L A P F+RC+K+N+ + FD V+RQ+R +LET
Sbjct: 560 --APSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLET 617
Query: 573 VNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQ 632
V + GY R ++ F +YR+L L + ED +L MK
Sbjct: 618 VRIRRAGYSVRYTYQDFTQQYRIL-----LPKGAQSCREDISTLL-----SKMKID---- 663
Query: 633 SEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHR 666
++ IGK IF+ E +Q L+ +T HR
Sbjct: 664 ---KRNYQIGKTKIFMRETEKQALD----ETLHR 690
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 210 bits (537), Expect = 4e-58
Identities = 155/554 (27%), Positives = 231/554 (41%), Gaps = 93/554 (16%)
Query: 112 ESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIPFMD---VVRVLAAVLLLGNV 168
E+Y LN Q G+ DA F+ A + VLG D + R+LA++L LGNV
Sbjct: 212 ETYYYLN----QGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNV 267
Query: 169 QFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLVKSLC 228
F +K + V E + +VA LL + L + IT + R + + +
Sbjct: 268 YF-EKRETDAQEVA--SVVSARE--IQAVAELLQISPEGLQKAITFKVTETRREKIFTPL 322
Query: 229 DANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHA 288
+ RD +AK LY ++ R N+L V+
Sbjct: 323 TVESAVDARDAIAKVLYALLFNWLITRVNAL-----------------------VSPTQD 359
Query: 289 STVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHF 348
+ SI ILD++GFED + E LCIN E +Q+
Sbjct: 360 TL-------------------------SIAILDIYGFEDLSFNSFEQLCINYANENLQYL 394
Query: 349 YNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RGTAET 407
+N +F+ E E + E+ + DN P I+LIS G+L +LD +C + T T
Sbjct: 395 FNKIVFQEEQEEYIREQLDWT-EIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHT 453
Query: 408 YLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVF-H 466
+L K H NP PK + FTI+H+AG+V Y FL+ N D V D++ +F
Sbjct: 454 FLQKCHYHHGANPLYSKPK-MPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVS 512
Query: 467 KQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRL 526
+T + HLF S A + + + + S +H T+ F L
Sbjct: 513 SRTRVVA---HLF-SSHAAQRAPKRLGKSSSGTRLYKAH-----------TVAAKFQQSL 557
Query: 527 DNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRF 586
+L+ + P FVRC+K N + G F+ VM Q+R VLETV + G+P R+ F
Sbjct: 558 LDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPF 617
Query: 587 KAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHI 646
+ F RYR L KL R + C+ L S L + +G +
Sbjct: 618 QHFIDRYRCLVAL-KLARPAP--GDMCVSEL---------SRLCGVE--PPMYRVGASKL 663
Query: 647 FLSEGIRQQLEMLR 660
FL E + Q LE +R
Sbjct: 664 FLKEHLHQLLESMR 677
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 210 bits (536), Expect = 6e-58
Identities = 147/566 (25%), Positives = 235/566 (41%), Gaps = 111/566 (19%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIPFMD---VVRVLAAVL 163
K L P YL QS D V+DA + A + + V+GI + + RV+AA+L
Sbjct: 209 KYKLG--DPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAIL 266
Query: 164 LLGNVQF-----VDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHN 218
LGN++F +D S E L + A LL +L + R
Sbjct: 267 HLGNIEFAKGEEIDSSVLKDEKS---------EFHLKTAAELLMCDEKALEDALCKRVMV 317
Query: 219 ARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVH 278
+++ D + + ++RD LAK +Y R +V + NS ++ D +
Sbjct: 318 TPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINS---------SIGQDPD---- 364
Query: 279 NQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCI 338
SKS+ IG+LD++GFE K + E CI
Sbjct: 365 --------------------SKSL--------------IGVLDIYGFESFKTNSFEQFCI 390
Query: 339 NLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVE 398
NL E +Q +N H+FK E E I +++VDN +DLI G++++LD
Sbjct: 391 NLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSY-IEFVDNQDVLDLIEKKPGGIIALLDEA 449
Query: 399 CSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVV 457
C + T ET+ K+ + + R PK + FTI H+AG V Y T FL+ NKD V
Sbjct: 450 CMFPKSTHETFAQKLYQTFKDHKRFEKPK-LSRTAFTIDHYAGDVTYQTDQFLDKNKDYV 508
Query: 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVST 517
+ ++ + C F + L+ P + S S
Sbjct: 509 VAEHQALLNASNCSF----------VAGLF-----PPLPEETSKSSKFS---------SI 544
Query: 518 LTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMA 577
++ F +L +L+ +L PH++RC+K N+ G F+ V++Q+R VLE + +
Sbjct: 545 GSR-FKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISC 603
Query: 578 GGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVST 637
GYP R F F R+ +LAP ++ + C IL + +
Sbjct: 604 AGYPTRRTFDEFLDRFGILAP--EVLKGSSDDKAACKKILDKMGLK-------------- 647
Query: 638 SWVIGKRHIFLSEGIRQQLEMLRSDT 663
+ IGK +FL G +L+ R++
Sbjct: 648 GYQIGKTKVFLRAGQMAELDARRTEV 673
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 209 bits (535), Expect = 1e-57
Identities = 130/546 (23%), Positives = 214/546 (39%), Gaps = 108/546 (19%)
Query: 114 YTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIPFMD---VVRVLAAVLLLGNVQ 169
P YL QS D ++D F+ + + V+G + + R++AA+L LGNVQ
Sbjct: 211 QKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQ 270
Query: 170 FVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASL-----FRGITTRTHNARGQLV 224
F + + ++ + L+ A LLGV + L R I T RG++
Sbjct: 271 FAENGDGA--------AVISDKDVLDFAAYLLGVDPSELEKALTSRTIETG-GGGRGEVY 321
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ + TRD LAKA+Y R +V R N
Sbjct: 322 DVPLNVEQAAYTRDALAKAIYSRLFDWLVSRIN--------------------------- 354
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
K++ + IG+LD++GFE + + E CIN E
Sbjct: 355 ---------------KALQVKSPGKNK----VIGVLDIYGFEIFQKNSFEQFCINYVNEK 395
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLR-TGLLSMLDVECSLRG 403
+Q + K+ E E I ++Y +N DLI R G+ S+LD C+
Sbjct: 396 LQQIFIELTLKAEQEEYVREGIKW-TPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454
Query: 404 TA--ETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDDL 461
+T+L K+ + +P F I+H+AG V Y F + NKD + DL
Sbjct: 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGS-DEFRIKHYAGDVTYSVEGFCDKNKDTLFKDL 513
Query: 462 VSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQD 521
+ + + F L++L+ + SD + P + +
Sbjct: 514 IELMQSSSNPF----------LRSLFPEK---------------SDADSKKRPTTAGFK- 547
Query: 522 FHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYP 581
T + L+ +L+ PH++RC+K N +++ FD V+ Q++ L +LE V + G+
Sbjct: 548 IKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFA 607
Query: 582 HRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVI 641
+R F F RY+LL+P D +IL+ + P + +
Sbjct: 608 YRQTFDKFLQRYKLLSPKTWPTWPGDAK-SGVEVILK----DLNIDP--------EEYQM 654
Query: 642 GKRHIF 647
GK IF
Sbjct: 655 GKTKIF 660
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 195 bits (496), Expect = 1e-52
Identities = 143/497 (28%), Positives = 212/497 (42%), Gaps = 85/497 (17%)
Query: 108 KLHLES---YTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIPFMD---VVRVLAA 161
KL+L+S Y L QS + V+DA RF L ++ I D V +LAA
Sbjct: 209 KLNLKSASEYKYLK----QSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAA 264
Query: 162 VLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTR-THNAR 220
VL LGNV F + N V V + L++ A L+G L ++TR H
Sbjct: 265 VLWLGNVSF----TVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHVNN 317
Query: 221 GQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQ 280
+V+ L + RD LAK++Y +V + N
Sbjct: 318 DNIVQKLTLQQAIDA-RDALAKSIYASLFDWLVEQIN----------------------- 353
Query: 281 ADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINL 340
+ VG R T SI ILD++GFE + E CIN
Sbjct: 354 ------KSLEVGK----------------RR-TGRSISILDIYGFESFDKNSFEQFCINY 390
Query: 341 CAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECS 400
E +Q +N H+FK E ++ I +V++ DN C+DL GLLS+LD E +
Sbjct: 391 ANERLQQHFNRHLFKLEQEEYEEDGIDW-TKVEFEDNQECLDLFEKKPLGLLSLLDEEST 449
Query: 401 L-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459
T T+ K+K QH F + FT++H+AG V YDT+ FLE N+D++
Sbjct: 450 FPNATDLTFANKLK-QHLKTNSCF--RGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHS 506
Query: 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLT 519
D + + C LF S + S + P + D ++
Sbjct: 507 DSIQLLSSCKCQL---PQLFASSM----------LIQSPVVGPLYVASA--ADSQKLSVG 551
Query: 520 QDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGG 579
F +L L++ L + PHF+RC+K N+ + G +++G V++Q+R VLE V + G
Sbjct: 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSG 611
Query: 580 YPHRMRFKAFNARYRLL 596
YP RM + F RY L
Sbjct: 612 YPTRMTHQEFARRYGFL 628
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 134 bits (339), Expect = 2e-32
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 32/308 (10%)
Query: 317 IGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVD 376
IG+LD+ GFE + + E CIN C E +Q F+N + K E + E + + EV YVD
Sbjct: 399 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVN-EVHYVD 457
Query: 377 NVPCIDLISSLRTGLLSMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKPV------- 428
N CIDLI + G+L +LD E L + + + + V +H+ + RL P+
Sbjct: 458 NQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRN 517
Query: 429 --DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKAL 486
D F I+HFAG V Y+T+ F+E N D + L S+ F LF S
Sbjct: 518 LRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLI--CESKDKFLRSLFESSTNNN 575
Query: 487 YSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKA 546
+ + + +SF IS + F T+L+ LL L F+RC+K
Sbjct: 576 DTKQKAGK-LSF-IS----------------VGNKFKTQLNLLLEKLRSTGSSFIRCIKP 617
Query: 547 NSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTE 606
N S +F+ ++ Q++ ++ ++LM GG+P R F Y+ P KL R +
Sbjct: 618 NLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMP-PKLVRLD 676
Query: 607 DRLTEDCL 614
RL L
Sbjct: 677 PRLFCKAL 684
Score = 68.7 bits (168), Expect = 9e-12
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 121 YLQSGDTRQDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQFVDKSSSS 177
+L+ G + ++D FQ L +G+ +D+ RV+A VL LGN+ F + S+S
Sbjct: 247 HLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTS 306
Query: 178 GNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRT-----HNARGQLVKSLCDANM 232
G V E +L A LLG+ L +TTR A+G ++K
Sbjct: 307 GGCN----VKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQ 362
Query: 233 SNMTRDCLAKALYCRTVATIVRRAN 257
+N RD LAKA+Y +V R N
Sbjct: 363 ANNARDALAKAVYSHLFDHVVSRVN 387
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 131 bits (331), Expect = 3e-31
Identities = 99/386 (25%), Positives = 174/386 (45%), Gaps = 58/386 (15%)
Query: 317 IGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVD 376
IG+LD+FGFE K + LE L IN+ E +Q + +F+ + +DE I S E++Y
Sbjct: 464 IGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGI-STEELEYTS 522
Query: 377 NVPCIDLISSLRTGLLSMLDVEC-SLRGTAETYLGKVKAQHRHNPRLFDPKPVDAR-CFT 434
N IDL+ +LS+L+ +C + GT E ++ ++NP+ + P VD+ F
Sbjct: 523 NESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPK-YKPAKVDSNKNFV 581
Query: 435 IQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSEL-KALYSLETVP 493
I+H G + Y S FL NKDV+ +LV V + L + L+ V
Sbjct: 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASP-----------NPLVRDLFEGVEVE 630
Query: 494 RGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSG 553
+G L G + F +LD+L+ + PHF+RC+K N ++
Sbjct: 631 KG-----------KLAKG----QLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPL 675
Query: 554 KFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDC 613
++ V+ Q+ SL +LE + L G+ +R F F ++++ + L + D +
Sbjct: 676 DWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFK----YLDLAVSNDSSLDPK 731
Query: 614 LLILQCVEEEHMKSPLLTQSEVST-SWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAV--- 669
+ LL +S + S+ IGK +FL + + L R + A
Sbjct: 732 EKAEK----------LLERSGLPKDSYAIGKTMVFLK---KDAAKELTQIQREKLAAWEP 778
Query: 670 ---LIQAVWRGTYARKRWPLLRRNLE 692
+++A+ ++ +R+N++
Sbjct: 779 LVSVLEALILKIKKKR---KVRKNIK 801
Score = 56.2 bits (136), Expect = 6e-08
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 154 DVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGIT 213
D+ +L+ VLLLGNV+ K + + N LL + SL + +T
Sbjct: 350 DIFSILSGVLLLGNVEIEGKEEGGLTDAA--AISDESLEVFNEACELLFLDYESLKKELT 407
Query: 214 TRTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANS 258
+ A Q ++ + S M +D L+KA+Y + I+R N+
Sbjct: 408 VKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNA 452
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 58.7 bits (142), Expect = 1e-08
Identities = 88/421 (20%), Positives = 152/421 (36%), Gaps = 93/421 (22%)
Query: 311 HATDGSIGILDMFGFEDP------KPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDE 364
H + SI ++D GF++P + + E LC N E +Q ++ F +E +E
Sbjct: 369 HHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEE 428
Query: 365 NI---------HSDVEVDYVDNVPCIDLISSL-----RTGLLSMLDVECSLRGTAE---- 406
+ V VD P ++ + GLL +LD E + G+++
Sbjct: 429 GVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFL 488
Query: 407 ----TYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGR--VLYDTSDFL---------- 450
G + + RL F + H G VLYD + +L
Sbjct: 489 ERLFAAYGDRETRETGLSRLR--TCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAAL 546
Query: 451 ---ETNKDVVPDDLVSVFHKQT-----CIFGFATHLFGSELKALYSLETVPRGISFRISP 502
+ +D +++ S+F + C+ A G E + +L R S R +
Sbjct: 547 NAPQLLQDSKREEINSLFQGRAGLAPVCLGAGA----GLEGTSQQALR---RSSSIRRTF 599
Query: 503 TSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCV------------KANSSE 550
TS + + P + ++D L+ +L + HFV C A+ S
Sbjct: 600 TSSTAAVKRKSPCVQVK----LQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSP 655
Query: 551 TSGKFDRGT---------VMR-QIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFC 600
+ + ++R Q+R Q+LE L G+P + F R+ LLA
Sbjct: 656 QQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE-- 713
Query: 601 KLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEV-STSWVIGKRHIFLSEGIRQQLEML 659
LT+ +E +L E+ +S+ IG +F G+ +LE
Sbjct: 714 -------GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQ 766
Query: 660 R 660
R
Sbjct: 767 R 767
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif. Calmodulin-binding
motif.
Length = 21
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 665 HRAAVLIQAVWRGTYARKR 683
+AA+ IQA WRG ARKR
Sbjct: 1 RKAAIKIQAAWRGYLARKR 19
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif. Short calmodulin-binding
motif containing conserved Ile and Gln residues.
Length = 23
Score = 35.8 bits (84), Expect = 0.002
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 664 RHRAAVLIQAVWRGTYARKR 683
RAA++IQA WRG ARKR
Sbjct: 2 LTRAAIIIQAAWRGYLARKR 21
>gnl|CDD|227825 COG5538, SEC66, Endoplasmic reticulum translocation complex,
subunit SEC66 [Cell motility and secretion].
Length = 180
Score = 34.6 bits (79), Expect = 0.11
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 297 KSSKSMAALNNAVRHATDGSIG--ILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMF 354
K K M LN DG IG + F E+ K +LE + I A +Q + +F
Sbjct: 82 KLKKDMEVLNTLYE---DGMIGEEHWERFN-EESKNCELERIDIESEANILQPGWGQEIF 137
Query: 355 KSSIESCRDENIHS 368
K E +E I
Sbjct: 138 KDCSEISENETIGP 151
>gnl|CDD|202568 pfam03181, BURP, BURP domain. The BURP domain is found at the
C-terminus of several different plant proteins. It was
named after the proteins in which it was first
identified: the BNM2 clone-derived protein from Brassica
napus; USPs and USP-like proteins; RD22 from Arabidopsis
thaliana; and PG1beta from Lycopersicon esculentum. This
domain is around 230 amino acid residues long. It
possesses the following conserved features: two
phenylalanine residues at its N-terminus; two cysteine
residues; and four repeated cysteine-histidine motifs,
arranged as: CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where
X can be any amino acid. The function of this domain is
unknown.
Length = 216
Score = 35.0 bits (81), Expect = 0.11
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 771 PPPVPPSRPYTVTGNSKISYPQTRVM--KMPYPEDGKGDVTLGKGEAVVV--VGASSRRG 826
P + YTV G ++ V M YP T+ K A V VGA +
Sbjct: 111 VEGGGPLQKYTVEGVKPVAGGGKVVACHPMLYPYAVFYCHTVPKTRAYEVDLVGADGTKV 170
Query: 827 HLV-VEHCNTS----IHVPFQFLELKPGPA----LFQETHM 858
V V H +TS HV FQ L +KPG E H+
Sbjct: 171 KAVAVCHTDTSAWNPKHVAFQVLGVKPGTVPVCHFLPEGHV 211
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 35.5 bits (82), Expect = 0.12
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 705 SSNHRTSNGGGANACLPSTSKASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLF 764
+ + A + PS S A+A P+ + QP AGTPP + + T
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP-AGTPPTVSVDPPAAVPVNPPST-- 442
Query: 765 GLDLERPPPVPPSRPYTVTGNSKISYPQTR 794
RP + V+ S + R
Sbjct: 443 APQAVRPAQFKEEKKIPVSKVSSLGPSTLR 472
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 32.9 bits (75), Expect = 0.87
Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 680 ARKRWPLLRRNLEMKSGNTGGTSNLSSNHRTSNGGGANACLPSTSKASAP-PTLTRPRPQ 738
+K++ +RR L++ + G R G NA L KA P P
Sbjct: 81 MQKQYEEIRRELDVLNKQRGDDQ-----RRIEKLGQDNAALAEQVKALGANPVTATGEPV 135
Query: 739 PIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPPSRPYTVTGNSKISYPQTRVMKM 798
P PP P + Q T + VPP + GN PQ +
Sbjct: 136 PQMPASPPGPEGE-----PQPGNTPVSFPPQGSVAVPPPTAF-YPGNGVTPPPQVTYQSV 189
Query: 799 PYP 801
P P
Sbjct: 190 PVP 192
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 32.4 bits (73), Expect = 1.3
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 711 SNGGGANACLPSTSKASAPPTLTR------PRPQPIAGTPPPDPNEKCDQKIIQQTCTLF 764
G + P + A + P T P+ PIA P P P ++ + +L
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQP-QQPSPLSLISAPSLH 233
Query: 765 GLDLERPPPVPPSRPYTVTGNS 786
L P P PP +P T + S
Sbjct: 234 PQRL--PSPHPPLQPQTASQQS 253
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 31.9 bits (72), Expect = 1.4
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 725 KASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPPSRPYTVTG 784
K + PT+ P QP P P ++ Q+ +Q P P T G
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ------PTPQNPAQQPPQTEQG 255
Query: 785 NSK 787
+ +
Sbjct: 256 HKR 258
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein.
Length = 94
Score = 29.7 bits (66), Expect = 1.5
Identities = 16/60 (26%), Positives = 17/60 (28%), Gaps = 22/60 (36%)
Query: 727 SAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPPSRPYTVTGNS 786
AP P P P A PPP P P PVP P N+
Sbjct: 5 RAPKPPEPPAPLPPAPVPPPPP--------------------APPAPVPE--PTVKPVNA 42
>gnl|CDD|151542 pfam11098, Chlorosome_CsmC, Chlorosome envelope protein C.
Chlorosomes are light-harvesting antennae found in green
bacteria. CsmC is one of the proteins that exists in the
chlorosome envelope. CsmC has been shown to exist as a
homomultimer with CsmD in the chlorosome envelope. CsmC
is thought to be important in chlorosome elongation and
shape.
Length = 139
Score = 30.2 bits (68), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 251 TIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSKSMA 303
TI R A ++K + + G L SD+ ++V N D A+ G + S++ K++
Sbjct: 77 TIDRVAITVKDVSRSAGELYSDAVKNVENVTDNAATAIGDAGVSASEAVKNVT 129
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.4 bits (71), Expect = 2.6
Identities = 12/59 (20%), Positives = 17/59 (28%)
Query: 721 PSTSKASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPPSRP 779
P + + P + P P + Q +PPP PP RP
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 30.7 bits (70), Expect = 4.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 669 VLIQAVWRGTYARKRWPLLRRNLEMKSGNTGGTSNLSSNHRTSNGGGANACLPSTSKASA 728
VL + +WR R LLRR GT +T+ GA+ +A+
Sbjct: 171 VLPELLWRLGLGRAWPRLLRR--------VEGTPVDPIPTQTTLSDGAHGV--KLYRANM 220
Query: 729 PPTLTRPRPQPI 740
+L+RPR +
Sbjct: 221 IRSLSRPRERYT 232
>gnl|CDD|113971 pfam05220, MgpC, MgpC protein precursor. This family contains
several Mycoplasma MgpC like-proteins.
Length = 224
Score = 30.0 bits (67), Expect = 4.1
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 261 RLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKS-SKSMAALNNAVRHATDGSIGI 319
+ G+ +++DS+ S +NQA S A G K+ ++ A LN + +G +
Sbjct: 87 KAGAVGYDMTTDSSASTYNQALAWSTTAGLDSKGGYKALVENTAGLNGPI----NGLFTL 142
Query: 320 LDMFGFEDP 328
LD F + P
Sbjct: 143 LDTFAYVTP 151
>gnl|CDD|218632 pfam05549, Allexi_40kDa, Allexivirus 40kDa protein.
Length = 271
Score = 29.7 bits (67), Expect = 5.3
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 483 LKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPH 539
+ ++YS+E I S S LL + T + H +LD L SL
Sbjct: 94 VDSIYSVEQ---KIELSTQTPSSSKLLKKLTSIETSLEALHAKLDELTSSLTSTLAG 147
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 30.2 bits (68), Expect = 6.0
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 713 GGGANACLPSTSKASAPPTLTRPRPQPIAGTPPPD 747
G G A P ASAPP P P P PPP
Sbjct: 898 GTGRVATAPGGDAASAPPPGAGP-PAPPQAVPPPR 931
>gnl|CDD|234208 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
Members of this family are bacterial domains that
include a region related to the von Willebrand factor
type A (VWFA) domain (pfam00092). These domains are
restricted to, and have undergone a large paralogous
family expansion in, the Acidobacteria, including
Solibacter usitatus and Acidobacterium capsulatum ATCC
51196.
Length = 296
Score = 29.6 bits (67), Expect = 6.1
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 518 LTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMA 577
L QDF + L +L +P NSS + GT + +L LE +A
Sbjct: 102 LLQDFTSDPRLLEAALNRLKP--PLRTDYNSSGAFVRDGGGTALYDAITLAALE---QLA 156
Query: 578 GGYP 581
Sbjct: 157 NALA 160
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 30.1 bits (68), Expect = 6.5
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 11/78 (14%)
Query: 478 LFGSELKALYSLE---------TVPRGISFRISP-TSHSDLLNGDEPVSTLT-QDFHTRL 526
F SE+KAL + +P G + E S + + L
Sbjct: 156 AFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSKESADELAEHL 215
Query: 527 DNLLRSLVHARPHFVRCV 544
+LL V R V
Sbjct: 216 RSLLEDAVKRRLVADVPV 233
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family
[Inorganic ion transport and metabolism].
Length = 416
Score = 29.6 bits (67), Expect = 8.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 72 ARFNASQLFLNFKVALWERHLIVSVVIILVFFSVTV 107
A + FLN+++ LW R LI I+ ++ +
Sbjct: 308 AGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIII 343
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 29.3 bits (66), Expect = 8.9
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 694 KSGNTGGTSNLSSNHRTSNGGGANACLPS----TSKASAPPTLTRPRPQPIAGTP----P 745
K+ + G+S+LSS +++S N + P ++ PI+ TP P
Sbjct: 77 KNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDIS---APPISPTPTQAAP 133
Query: 746 PDPN 749
P
Sbjct: 134 PQTP 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,943,583
Number of extensions: 4151981
Number of successful extensions: 3946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3843
Number of HSP's successfully gapped: 65
Length of query: 863
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 758
Effective length of database: 6,280,432
Effective search space: 4760567456
Effective search space used: 4760567456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)