RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6222
(863 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 363 bits (934), Expect = e-110
Identities = 152/594 (25%), Positives = 237/594 (39%), Gaps = 89/594 (14%)
Query: 108 KLHLES---YTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAA 161
L L + + Q G D ++DA + +LGI M + R+LA
Sbjct: 276 TLRLGNANYFHYTK----QGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAG 331
Query: 162 VLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARG 221
+L LGNV+F + S S L L+GV + + R
Sbjct: 332 ILHLGNVEFASRDSDSC-------AIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATAT 384
Query: 222 QLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQA 281
+ + RD LAK +Y IV N +++H+
Sbjct: 385 ETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN-----------------KALHSTV 427
Query: 282 DVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLC 341
S IG+LD++GFE + + E CIN
Sbjct: 428 KQHS------------------------------FIGVLDIYGFETFEINSFEQFCINYA 457
Query: 342 AETMQHFYNTHMFKSSIESCRDENIHSDVE-VDYVDNVPCIDLISSLRTGLLSMLDVECS 400
E +Q +N H+FK E E I +D+ DN PCI+LI + + G+L +LD EC
Sbjct: 458 NEKLQQQFNMHVFKLEQEEYMKEQI--PWTLIDFYDNQPCINLIEA-KMGVLDLLDEECK 514
Query: 401 L-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459
+ +G+ +T+ K+ H + LF+ + + F I+HFA +V Y FLE NKD V +
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYE 574
Query: 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVS--- 516
+ + V F LF E KA+ P G +
Sbjct: 575 EQIKVLKSSKK-FKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHK 633
Query: 517 -TLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNL 575
T+ F L L+ +L PH+VRC+K N + FD ++Q+R+ VLET+ +
Sbjct: 634 KTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRI 693
Query: 576 MAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEV 635
A G+P R ++ F +RYR+L K ++ + + C +L+ + + K
Sbjct: 694 SAAGFPSRWTYQEFFSRYRVLMKQ-KDVLSDRK--QTCKNVLEKLILDKDK--------- 741
Query: 636 STSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+ GK IF G LE +R+D A + IQ RG RK++ +RR
Sbjct: 742 ---YQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
Score = 30.5 bits (69), Expect = 3.0
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 579 GYPHRMRFKAFNARYRLLAPFCK----LRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSE 634
G+ R ++ + + + +I+Q + ++
Sbjct: 780 GWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR 839
Query: 635 VSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRNLEM 693
+T + +L Q + R +++IQ RG AR + + +
Sbjct: 840 DATIALQALLRGYLVRNKYQMML------REHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Score = 29.7 bits (67), Expect = 6.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQL 79
+DL L L E AVL L RF S+L
Sbjct: 72 NDLTALS-YLHEPAVLHNLKVRFIDSKL 98
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 354 bits (911), Expect = e-110
Identities = 151/594 (25%), Positives = 233/594 (39%), Gaps = 89/594 (14%)
Query: 108 KLHL---ESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAA 161
L L + Q G D ++DA + +LGI M + R+LA
Sbjct: 276 TLRLGNANYFHYTK----QGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAG 331
Query: 162 VLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARG 221
+L LGNV+F + S S L L+GV + + R
Sbjct: 332 ILHLGNVEFASRDSDSC-------AIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATAT 384
Query: 222 QLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQA 281
+ + RD LAK +Y IV N L + +
Sbjct: 385 ETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNK------ALHSTVKQHS------- 431
Query: 282 DVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLC 341
IG+LD++GFE + + E CIN
Sbjct: 432 ----------------------------------FIGVLDIYGFETFEINSFEQFCINYA 457
Query: 342 AETMQHFYNTHMFKSSIESCRDENIHSDVE-VDYVDNVPCIDLISSLRTGLLSMLDVECS 400
E +Q +N H+FK E E I +D+ DN PCI+LI + + G+L +LD EC
Sbjct: 458 NEKLQQQFNMHVFKLEQEEYMKEQI--PWTLIDFYDNQPCINLIEA-KMGVLDLLDEECK 514
Query: 401 L-RGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPD 459
+ +G+ +T+ K+ H + LF+ + + F I+HFA +V Y FLE NKD V +
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYE 574
Query: 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVS--- 516
+ + V F LF E KA+ P G +
Sbjct: 575 EQIKVLKSSKK-FKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHK 633
Query: 517 -TLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNL 575
T+ F L L+ +L PH+VRC+K N + FD ++Q+R+ VLET+ +
Sbjct: 634 KTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRI 693
Query: 576 MAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEV 635
A G+P R ++ F +RYR+L K ++ + + C +L+ + + K
Sbjct: 694 SAAGFPSRWTYQEFFSRYRVLMKQ-KDVLSDRK--QTCKNVLEKLILDKDK--------- 741
Query: 636 STSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+ GK IF G LE +R+D A + IQ RG RK++ +RR
Sbjct: 742 ---YQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 357 bits (917), Expect = e-107
Identities = 137/594 (23%), Positives = 243/594 (40%), Gaps = 86/594 (14%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVLL 164
L LE N ++L +G +D FQ + ++G ++RV+++VL
Sbjct: 303 DLLLEG--FNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQ 360
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
LGN+ F + ++ + + V L+G+ R I T +V
Sbjct: 361 LGNIVFKKERNTDQ-------ASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVV 413
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ ++ + LAKA + R I+ R N L +
Sbjct: 414 QKAQTKEQADFAIEALAKAKFERLFRWILTRVNK---------ALDKTKRQGAS------ 458
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
+GILD+ GFE + + E LCIN E
Sbjct: 459 -------------------------------FLGILDIAGFEIFEINSFEQLCINYTNEK 487
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLI--SSLRTGLLSMLDVECS 400
+Q +N MF E + E I + +D+ +D PCI+LI + G+L++LD EC
Sbjct: 488 LQQLFNHTMFILEQEEYQREGI--EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECW 545
Query: 401 L-RGTAETYLGKVKAQHRHNPRLFDPKPVDAR-CFTIQHFAGRVLYDTSDFLETNKDVVP 458
+ T +++ K+ + ++ + K + + F I H+AG+V Y+ S +L N D +
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLN 605
Query: 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTL 518
D++ S+ ++ + F L+ + + + S S + + T+
Sbjct: 606 DNVTSLLNQSSD--KFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMF-----RTV 658
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
Q + +L L+ +L + P+FVRC+ N + +GK D V+ Q+R VLE + +
Sbjct: 659 GQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQ 718
Query: 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTS 638
G+P+R+ F+ F RY +LA + D + C+L+++ +E +
Sbjct: 719 GFPNRIVFQEFRQRYEILAANAIPKGFMDGK-QACILMIKALELDPNL------------ 765
Query: 639 WVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRNLE 692
+ IG+ IF G+ LE R + QA RG ARK + ++ LE
Sbjct: 766 YRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLE 819
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 340 bits (874), Expect = e-104
Identities = 132/594 (22%), Positives = 227/594 (38%), Gaps = 101/594 (17%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVLL 164
+ + S++ G D+++D F+ +LG + + A++L
Sbjct: 299 VMLVTP-DSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILH 357
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
+G ++F + +G + VA L G+ + L + + ++V
Sbjct: 358 MGEMKFKQRPREEQ-------AESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMV 410
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ N + LAK+LY R +VRR N TL T + +
Sbjct: 411 TKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNK------TLDTKAKRNY---------- 454
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
IG+LD+ GFE + E LCIN E
Sbjct: 455 -------------------------------YIGVLDIAGFEIFDFNSFEQLCINYTNER 483
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLISSLRTGLLSMLDVECSL- 401
+Q F+N HMF E + E I E +D+ +D CIDLI G+LS+L+ EC
Sbjct: 484 LQQFFNHHMFILEQEEYKKEGI--AWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFP 540
Query: 402 RGTAETYLGKVKAQHRHNPRLFDPKPVDAR------CFTIQHFAGRVLYDTSDFLETNKD 455
+ +++ K+ H R+F R F + H+AG V Y + +LE NKD
Sbjct: 541 KADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKD 600
Query: 456 VVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPV 515
+ +++V++ + L+ P G + S +
Sbjct: 601 PINENVVALLGASKEPL----------VAELFKAPEEPAGGGKKKKGKSSA--------F 642
Query: 516 STLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNL 575
T++ L+ L+++L PHFVRC+ N + G D V+ Q++ VLE + +
Sbjct: 643 QTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRI 702
Query: 576 MAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEV 635
G+P R+ + F RY +LAP + D IL ++ + +
Sbjct: 703 CRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGK-TVSEKILAGLQMDPAE--------- 752
Query: 636 STSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+ +G +F G+ LE +R + + + QA RG RK + L+
Sbjct: 753 ---YRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQD 803
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 334 bits (858), Expect = e-100
Identities = 139/596 (23%), Positives = 237/596 (39%), Gaps = 107/596 (17%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
LHL P + +YL QSG V D F+ + + ++G M + +++A +L
Sbjct: 295 ALHLAG--PESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGIL 352
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGN++F + + ++ LN+ +++ GV + L + + A L
Sbjct: 353 HLGNIKFEKGAGE--------GAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
V + S+ +RD L KALY R +V++ N+ L S+
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINN---------VLCSERKAY------- 448
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
IG+LD+ GFE K + E LCIN E
Sbjct: 449 --------------------------------FIGVLDISGFEIFKVNSFEQLCINYTNE 476
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLISSLR-TGLLSMLDVECS 400
+Q F+N HMFK E E I + +D+ +D+ IDLI + G+L++LD +
Sbjct: 477 KLQQFFNHHMFKVEQEEYLKEKI--NWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534
Query: 401 L-RGTAETYLGKVKAQH-RHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458
T T + K+ + + N + +P+ F + H+AG+V+Y+ D+LE NKD +
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMYEIQDWLEKNKDPLQ 593
Query: 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTL 518
DL F + T LF A +G +F T+
Sbjct: 594 QDLELCFKDSSD--NVVTKLFNDPNIA----SRAKKGANFI-----------------TV 630
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
+ +L +L+ +L PHFVRC+ N+ + K + V+ Q+R VLE + +
Sbjct: 631 AAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRK 690
Query: 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTS 638
G+P+R+ + F RY LLAP + + +L+ + + +
Sbjct: 691 GFPNRIIYADFVKRYYLLAPNVPRDAEDSQKA--TDAVLKHLNIDPEQ------------ 736
Query: 639 WVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRNLEMK 694
+ G IF G ++E R + R + + +LE +
Sbjct: 737 YRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESR 792
Score = 31.9 bits (73), Expect = 1.2
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
Query: 593 YRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGI 652
++ K + ++ + + + +K T I L +
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 653 RQQLEMLR--SDTRHRAAVLIQAVWRGTYARKRWPLLRRNLEMK 694
++ E LR + + AVL+Q R + W +
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS 911
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 332 bits (854), Expect = e-100
Identities = 128/594 (21%), Positives = 230/594 (38%), Gaps = 93/594 (15%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
L LE + +L + ++ FQ L VLG + ++R+++AVL
Sbjct: 273 DLLLEP--CSHYRFLTNGPSS--SPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVL 328
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
GN+ + ++ + + + LLG+ R + T
Sbjct: 329 QFGNIALKRERNTDQ-------ATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDY 381
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
V+ ++ + LAKA Y R +V R N L +
Sbjct: 382 VQKAQTKEQADFALEALAKATYERLFRWLVLRLNR---------ALDRSPRQGAS----- 427
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
+GILD+ GFE + + E LCIN E
Sbjct: 428 --------------------------------FLGILDIAGFEIFQLNSFEQLCINYTNE 455
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLI--SSLRTGLLSMLDVEC 399
+Q +N MF E + E I +D+ +D PCIDLI + GLL++LD EC
Sbjct: 456 KLQQLFNHTMFVLEQEEYQREGI--PWTFLDFGLDLQPCIDLIERPANPPGLLALLDEEC 513
Query: 400 SL-RGTAETYLGKVKAQHRHNPRLFDPKPV-DARCFTIQHFAGRVLYDTSDFLETNKDVV 457
+ T ++++ KV + +P+ P+ + D F++ H+AG+V Y +++L N D +
Sbjct: 514 WFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPL 573
Query: 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVST 517
D++ ++ H+ T ++ + + G T
Sbjct: 574 NDNVAALLHQSTD--RLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMF-------RT 624
Query: 518 LTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMA 577
+ Q + L L+ +L + P FVRC+ N + +GK + V+ Q+R VLE + +
Sbjct: 625 VGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICR 684
Query: 578 GGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVST 637
G+P+R+ F+ F RY +L P + D + C ++Q +E +
Sbjct: 685 QGFPNRILFQEFRQRYEILTPNAIPKGFMDGK-QACEKMIQALELDPNL----------- 732
Query: 638 SWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLI--QAVWRGTYARKRWPLLRR 689
+ +G+ IF G+ QLE R+ + ++ L + + ++ R
Sbjct: 733 -YRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRD 785
Score = 32.7 bits (75), Expect = 0.70
Identities = 16/148 (10%), Positives = 37/148 (25%), Gaps = 15/148 (10%)
Query: 562 RQIRSLQVLETVNLMAGGYPHRMRFKAF------------NAR-YRLLAPFCKLRRTEDR 608
+ L+ N + + ++ K + ++
Sbjct: 756 SEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEV 815
Query: 609 LTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR--SDTRHR 666
+ + + +K T I L + ++ E LR + +
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 875
Query: 667 AAVLIQAVWRGTYARKRWPLLRRNLEMK 694
AVL+Q R + W +
Sbjct: 876 IAVLLQKYNRILKKLENWATTKSVYLGS 903
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 322 bits (827), Expect = 8e-98
Identities = 141/592 (23%), Positives = 227/592 (38%), Gaps = 107/592 (18%)
Query: 102 FFSVTVKLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRV 158
+F+ + YL++G + ++D F + +G+ +D+ RV
Sbjct: 277 YFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRV 336
Query: 159 LAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRT-- 216
+A VL LGN+ F + S+SG + L A LLG+ L +TTR
Sbjct: 337 VAGVLHLGNIDFEEAGSTSGG----CNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVML 392
Query: 217 ---HNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDS 273
A+G ++K +N RD LAK +Y +V R N ++
Sbjct: 393 TTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQ---------CFPFET 443
Query: 274 NESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQL 333
+ IG+LD+ GFE + +
Sbjct: 444 SSY---------------------------------------FIGVLDIAGFEYFEHNSF 464
Query: 334 EHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVE-VDYVDNVPCIDLISSLRTGLL 392
E CIN C E +Q F+N + K E + E + V V YVDN CIDLI + G+L
Sbjct: 465 EQFCINYCNEKLQQFFNERILKEEQELYQKEGL--GVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 393 SMLDVECSL-RGTAETYLGKVKAQHRHNPRLFDPKP---------VDARCFTIQHFAGRV 442
+LD E L + + + + V +H+ + RL P+ D F I+HFAG V
Sbjct: 523 DILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAV 582
Query: 443 LYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISP 502
Y+T+ F+E N D + L S+ + F LF S + +SF
Sbjct: 583 CYETTQFVEKNNDALHMSLESLICESRD--KFIRELFESSTNNNKDTKQKAGKLSFI--- 637
Query: 503 TSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMR 562
++ F T+L+ LL L F+RC+K N TS F+ ++
Sbjct: 638 --------------SVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILS 683
Query: 563 QIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEE 622
Q++ ++ ++LM GG+P R F Y+ P KL R + RL C + + +
Sbjct: 684 QLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPD-KLARLDPRLF--CKALFKALGL 740
Query: 623 EHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAV 674
+ G +F G + + + A L++ V
Sbjct: 741 NE------------IDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRV 780
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 305 bits (784), Expect = 8e-92
Identities = 135/564 (23%), Positives = 229/564 (40%), Gaps = 107/564 (18%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
LHL P + +YL QSG V D+ F+ + + ++G M + +++A +L
Sbjct: 295 ALHLAG--PESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGIL 352
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGN++F + + ++ LN+ +++ GV + L + + A L
Sbjct: 353 HLGNIKFEKGAGE--------GAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
V + S+ +RD L KALY R +V++ N+ L +
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINN---------VLCQERKAY------- 448
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
IG+LD++GFE K + E LCIN E
Sbjct: 449 --------------------------------FIGVLDIYGFEIFKVNSFEQLCINYTNE 476
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLISSLR-TGLLSMLDVECS 400
+Q F+N HMFK E E I + +D+ +D+ IDLI + G+L++LD +
Sbjct: 477 KLQQFFNHHMFKLEQEEYLKEKI--NWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534
Query: 401 L-RGTAETYLGKVKAQH-RHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVP 458
T T + K+ + + N + +P+ F + H+AG+V+Y+ D+LE NKD +
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKT-EFGVTHYAGQVMYEIQDWLEKNKDPLQ 593
Query: 459 DDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTL 518
DL F + T LF A +G +F T+
Sbjct: 594 QDLELCFKDSSD--NVVTKLFNDPNIA----SRAKKGANFI-----------------TV 630
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
+ +L +L+ +L PHFVRC+ N+ + K + V+ Q+R VLE + +
Sbjct: 631 AAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRK 690
Query: 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTS 638
G+P+R+ + F RY LLAP + + +L+ + +
Sbjct: 691 GFPNRIIYADFVKRYYLLAPNVPRDAEDSQKA--TDAVLKHLNIDP------------EQ 736
Query: 639 WVIGKRHIFLSEGIRQQLEMLRSD 662
+ G IF G ++E R
Sbjct: 737 FRFGITKIFFRAGQLARIEEAREL 760
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 299 bits (767), Expect = 3e-89
Identities = 130/569 (22%), Positives = 221/569 (38%), Gaps = 95/569 (16%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVLL 164
L + + P + +++ G+T ++DA A VLG + ++ A++
Sbjct: 300 MLLITN-NPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMH 358
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
GN++F K +G + A L+G+ SA L +G+ + V
Sbjct: 359 FGNMKFKLKQREEQ-------AEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYV 411
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ LAKA+Y R +V R N+ TL T
Sbjct: 412 TKGQNVQQVIYATGALAKAVYERMFNWMVTRINA------TLETKQPRQY---------- 455
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
IG+LD+ GFE + E LCIN E
Sbjct: 456 -------------------------------FIGVLDIAGFEIFDFNSFEQLCINFTNEK 484
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVE-VDY-VDNVPCIDLISSLRTGLLSMLDVECSL- 401
+Q F+N HMF E + E I + +D+ +D CIDLI G++S+L+ EC
Sbjct: 485 LQQFFNHHMFVLEQEEYKKEGI--EWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFP 541
Query: 402 RGTAETYLGKVKAQH-RHNPRLFDPKPVDAR---CFTIQHFAGRVLYDTSDFLETNKDVV 457
+ T T+ K+ H + P+ + + F++ H+AG V Y+ +L+ NKD +
Sbjct: 542 KATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPL 601
Query: 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVST 517
+ +V ++ K + + LF + A +E S T
Sbjct: 602 NETVVGLYQKSSL--KLLSTLFANYAGADAPIEKGKGKAKKGSSF-------------QT 646
Query: 518 LTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMA 577
++ L+ L+ +L PHFVRC+ N +++ G D VM Q+R VLE + +
Sbjct: 647 VSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICR 706
Query: 578 GGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVST 637
G+P+R+ + F RYR+L P + +L ++ +H +
Sbjct: 707 KGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQ----------- 755
Query: 638 SWVIGKRHIFLSEGIRQQLEMLRSDTRHR 666
+ G +F G+ LE +R + R
Sbjct: 756 -YKFGHTKVFFKAGLLGLLEEMRDERLSR 783
Score = 28.8 bits (65), Expect = 9.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLFLN 82
+D+ L L E AVL L R+ + ++
Sbjct: 88 EDMAMLT-FLHEPAVLYNLKDRYGSWMIYTY 117
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 296 bits (759), Expect = 7e-89
Identities = 136/571 (23%), Positives = 219/571 (38%), Gaps = 108/571 (18%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
+L L YL +SG ++D+ F+ + LG+ + R+LAA+L
Sbjct: 216 ELGLTP-NAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAIL 274
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRT----HNA 219
+GN+ F + + TV V+ +L + AS L SL + R+
Sbjct: 275 HIGNITFAEAAEQRTGTTTVK---VSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGK 331
Query: 220 RGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHN 279
R ++ D N + +RD LAKALY R +V + N+ + +
Sbjct: 332 RCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINT------IINCTTEKGP----- 380
Query: 280 QADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCIN 339
IGILD++GFE + + E L IN
Sbjct: 381 ------------------------------------VIGILDIYGFEVFQNNSFEQLNIN 404
Query: 340 LCAETMQHFYNTHMFKSSIESCRDENIHSD-VEVDYVDNVPCIDLISSLRTGLLSMLDVE 398
C E +Q + KS E E I + ++Y +N P +LI GL+S+LD
Sbjct: 405 FCNEKLQQLFIELTLKSEQEEYVREGI--EWKNIEYFNNKPICELIEKKPIGLISLLDEA 462
Query: 399 CSL-RGTAETYLGKVKAQHRHNPRLFDPKPVDAR-----CFTIQHFAGRVLYDTSDFLET 452
C + + T +T+L + Q NP L R CF ++H+AG V YD FL+
Sbjct: 463 CLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDK 522
Query: 453 NKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGD 512
NKD + DL+S + ++ L+ T P R T
Sbjct: 523 NKDTLFGDLISSMQSSSDPL----------VQGLFP-PTRPEDSKKR-PET--------- 561
Query: 513 EPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLET 572
+ F ++ L+ +L+ PH+VRC+K+N ++ +G D V Q+R L +LE
Sbjct: 562 --AGSQ---FRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLEN 616
Query: 573 VNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQ 632
V + G+ R+ + F RY++L + LILQ +
Sbjct: 617 VRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAK-QATELILQQHNIDK-------- 667
Query: 633 SEVSTSWVIGKRHIFL-SEGIRQQLEMLRSD 662
+GK +F+ + E R
Sbjct: 668 ----EEIRMGKTKVFIRNPTTLFYFEEKREL 694
Score = 29.8 bits (68), Expect = 5.1
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLF 80
D + L +TE+A ++ L R + ++
Sbjct: 11 PDFVLL-NQITENAFIENLTMRHKSDNIY 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 1e-12
Identities = 121/636 (19%), Positives = 196/636 (30%), Gaps = 196/636 (30%)
Query: 2 TYSLISADVLNEKC----PPVPAVGGGGSTPHSPGDAEVTPR-----AAPVAVSCSAQLD 52
T S A L E+ P P +P AE+ + ++ V S Q D
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTP--AELVGKFLGYVSSLVEPSKVGQFD 81
Query: 53 DLIHLPGPLT--EDAVLKC--LHARFNASQLFLNFKVALWERHLIVSVVIILVFFSVTVK 108
+++L LT E+ L+ +HA A++L L + + I + + +
Sbjct: 82 QVLNLC--LTEFENCYLEGNDIHAL--AAKLLQENDTTLVKTKEL-----IKNYITARIM 132
Query: 109 LHLESYTPLNLSYL----QSGDTR-------QDDVED-----AARFQAWKACLGVLGIPF 152
+ + S L G+ + Q + +D +Q + +G
Sbjct: 133 AK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG------ 185
Query: 153 MDVVRVLAAVL--LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASL-F 209
D+++ A L L+ +K + G N + E + S LL +P S
Sbjct: 186 -DLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEW-LENPSNTPDKDYLLSIP-ISCPL 240
Query: 210 RGITTRTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTL 269
G+ QL A Y T K LG T G L
Sbjct: 241 IGVI--------QL-------------------AHYVVT----------AKLLGFTPGEL 263
Query: 270 -SSDSNESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMF--GFE 326
S + H+Q V + V A + S +S + + +I +L F G
Sbjct: 264 RSYLKGATGHSQGLVTA-----VAIAETDSWESF--FVSVRK-----AITVL--FFIGVR 309
Query: 327 DPKPSQLEHLCINLCAETMQHFYN------THMFKSSIESCRDENIHSDVEVDYVDN--V 378
+ +L ++ + M SI + E + V N +
Sbjct: 310 ----CYEAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKT---NSHL 360
Query: 379 PC-----IDLISSLR----TGLLSMLDVECSLRGTAETYLGKVKA-----QHR--HNPRL 422
P I L++ + +G SL G L K KA Q R + R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQ------SLYG-LNLTLRKAKAPSGLDQSRIPFSER- 412
Query: 423 FDPKPVDARCF-TIQ---HFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHL 478
K + F + H S L D++ DLV K F
Sbjct: 413 ---KLKFSNRFLPVASPFH---------SHLLVPASDLINKDLV----KNNVSFN----- 451
Query: 479 FGSELK-ALYSLET--VPRGISFRISPTSHSDLLNGDEPV--STLTQ-------DF---- 522
+++ +Y R +S IS D + PV T TQ DF
Sbjct: 452 -AKDIQIPVYDTFDGSDLRVLSGSISE-RIVDCII-RLPVKWETTTQFKATHILDFGPGG 508
Query: 523 HTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRG 558
+ L L VR + A + + + D G
Sbjct: 509 ASGLGVLTHRNKDGTG--VRVIVAGTLDINPDDDYG 542
Score = 58.1 bits (140), Expect = 1e-08
Identities = 94/627 (14%), Positives = 168/627 (26%), Gaps = 222/627 (35%)
Query: 182 TVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLVKSLCDANMSNMTRDCLA 241
TE G + + A L+G F G V SL + + L
Sbjct: 43 EPTE-GFAADDEPTTPAELVG-----KFLG-----------YVSSLVEPSKVGQFDQVLN 85
Query: 242 KALYCRTVATIVRRANSLKR--LG-----STLGTLSSDSNESVHNQADVASQHASTVGTA 294
L + L + L +++ ++ ++ + + A
Sbjct: 86 LCL------------TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 295 GSKSSK-SMAALNNAVRHATDGSIGILDMFG--------FEDPKPSQLEHLCINLCAETM 345
K S +AL R +G+ ++ +FG FE+ +
Sbjct: 134 KRPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEE-----------------L 173
Query: 346 QHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSLRGTA 405
+ Y T + + DLI L ++ A
Sbjct: 174 RDLYQT--YHVLVG----------------------DLIKFSAETLSELIRTTLD----A 205
Query: 406 ETYLGKVKAQHR--HNPRLFDPKPVD---ARC-------FTIQ--HF--AGRVL-YDTSD 448
E + NP P IQ H+ ++L + +
Sbjct: 206 EKVFTQGLNILEWLENP---SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 449 FLET-------NKDVVPDDLVSV------FHKQTCIFGFATHLF--GSELKALYSLETVP 493
++ +V ++ F + T LF G E P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVS--VRKAITVLFFIGVR-----CYEAYP 315
Query: 494 RGISFRISPTSHSDLLNGDE--P-----VSTLTQDFHTRLDNLLR--------------S 532
+ P+ D L +E P +S LTQ+ ++ + + S
Sbjct: 316 N---TSLPPSILEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHLPAGKQVEIS 369
Query: 533 LVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETV--NLMAG-GY-----PHRM 584
LV+ + V V SG +SL L A G P
Sbjct: 370 LVNGAKNLV--V-------SG---------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 585 RFKAFNARY-RLLAPF-CK-LRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVI 641
R F+ R+ + +PF L D + +D + + ++ P V
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----------VY 460
Query: 642 GKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRRN-----LEMKSG 696
F +R + ++ + R +W + L+ G
Sbjct: 461 ---DTFDGSDLRVLSGSISER-------IVDCIIR---LPVKWETTTQFKATHILDFGPG 507
Query: 697 NTGGTSNLSSNHRTSNGGGANACLPST 723
G L+ HR +G G + T
Sbjct: 508 GASGLGVLT--HRNKDGTGVRVIVAGT 532
Score = 52.0 bits (124), Expect = 9e-07
Identities = 115/713 (16%), Positives = 182/713 (25%), Gaps = 294/713 (41%)
Query: 256 ANSLKRLGSTLGTLSSDSNE-------SVHNQADV------ASQHASTVGTAGSKSSKSM 302
A S + L TLS S E + A T G A +
Sbjct: 3 AYSTRPL-----TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 303 AALNNAVRHATDGSIGILDMF-GF-----EDPKPSQLEHLCINLCAETMQHFYNTHMFKS 356
A L + F G+ E K Q + + +NLC + F N ++
Sbjct: 58 AEL--------------VGKFLGYVSSLVEPSKVGQFDQV-LNLC---LTEFENCYL--- 96
Query: 357 SIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSLRGTAETY-----LGK 411
+IH+ L+ T L+ ++ ++ Y + K
Sbjct: 97 -----EGNDIHALA----------AKLLQENDTTLVKTKEL---IK----NYITARIMAK 134
Query: 412 VKAQHRHNPRLFDPKPV-DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTC 470
+ N LF +A+ I F G Q
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAI--FGG---------------------------Q-- 163
Query: 471 IFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLL 530
G F EL+ LY T H V L + L L+
Sbjct: 164 --GNTDDYF-EELRDLYQ--------------TYHV-------LVGDLIKFSAETLSELI 199
Query: 531 RSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFN 590
R+ + A F T G + L+ LE P +
Sbjct: 200 RTTLDAEKVF----------TQG-LN---------ILEWLEN----PSNTP--------D 227
Query: 591 ARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKS-PL--LTQ--SEVSTSWVIGKRH 645
Y L P S PL + Q V T+ ++G
Sbjct: 228 KDYLLSIPI---------------------------SCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 646 IFLSEGIRQQLEMLRSDTRHR----AAVLIQAV------------------WRGTYARKR 683
+ L+ T H AV I + G +
Sbjct: 261 -------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 684 WPLLRRNLEM--KSGNTG-GT-------SNLSSNHRTSNGGGANACLPSTSKASAPPTLT 733
+P + S G SNL+ N+ LP+ + +L
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLV 371
Query: 734 -RPRPQPIAGTPPPD--------PNEKCDQKIIQQTCTLFGLDLERPPPV-----PPSRP 779
+ ++G PP K + Q+ F ER P + P
Sbjct: 372 NGAKNLVVSG-PPQSLYGLNLTLRKAKAPSG-LDQSRIPFS---ERKLKFSNRFLPVASP 426
Query: 780 Y-------------TVTGNSKISYPQTRVMKMP-Y-PEDGKGDVTLGKGEAV-VVVGASS 823
+ + +S+ +++P Y DG D+ + G +V
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFDGS-DLRVLSGSISERIVDC-- 482
Query: 824 RRGHLVVEHCN-------TSIHVPFQFLELKPGPA-----LFQETHMGT--RV 862
++ + H+ L+ PG A L GT RV
Sbjct: 483 ----IIRLPVKWETTTQFKATHI----LDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 31.9 bits (72), Expect = 1.0
Identities = 47/350 (13%), Positives = 89/350 (25%), Gaps = 170/350 (48%)
Query: 77 SQ-------LFLNFKVA--LWER---HL-------IVSVVI-----ILVFFSVTVKLHL- 111
SQ L+ K A +W R H I+ +VI + + F +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 112 ESYTPLNLSYLQSGDTRQDDV-----EDA---------------------------ARFQ 139
E+Y+ + + G + + + E + A F+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 140 AWK----------------------ACL-GVLGIPFMDVVRVLAAVLLLGNVQFVDKSSS 176
K A L V+ +V V+
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVM--SIESLVEVVF---------------- 1787
Query: 177 SGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLVKS---LCDANMS 233
+RG+T + R +L +S + N
Sbjct: 1788 --------------------------------YRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 234 NMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESV----HNQADVASQHAS 289
+ +AL +V R + + V +N + Q
Sbjct: 1816 RVAASFSQEAL-----QYVVER-------------VGKRTGWLVEIVNYNVEN--QQ--- 1852
Query: 290 TVGTAGSKSSKSMAALNNAVRHATDGSIGILDM---FGFEDPKPSQLEHL 336
V AG +++ + N + I I+++ E+ + HL
Sbjct: 1853 YV-AAGDL--RALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE----GHL 1895
Score = 30.8 bits (69), Expect = 2.3
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 32/106 (30%)
Query: 440 GRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFA------------THLFGSE----L 483
G LY TS +DV + K T +GF+ T FG E +
Sbjct: 1632 GMDLYKTSK---AAQDVW--NRADNHFKDT--YGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 484 KALYS---LETVPRG------ISFRISPTSHSDLLNGDEPVSTLTQ 520
+ YS ET+ G I I+ S S ++ + + TQ
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 3e-11
Identities = 72/526 (13%), Positives = 141/526 (26%), Gaps = 179/526 (34%)
Query: 197 VASLLGVPSAS-----LFRGITTRTHNARGQLVKSLCDAN----MSNMTRDCLAKAL--- 244
+ ++ A LF + ++ + V+ + N MS + + ++
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 245 -Y-------CRTVATI----VRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVG 292
Y V R +L L L N + G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------------G 157
Query: 293 TAGS-KSSKSMAALNNAVRHATDGSIGILDMFGFE---------DPKPSQLEHLCINLCA 342
GS K+ +A + S + F+ + + LE L L
Sbjct: 158 VLGSGKT--WVAL--DVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLY 207
Query: 343 ETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISS--LRTGLLSMLDVECS 400
+ + S + + + + L+ S LL +L+V+
Sbjct: 208 QIDP------NWTSRSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCLLVLLNVQ-- 254
Query: 401 LRGTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDD 460
N + ++ + C ++L T K V D
Sbjct: 255 ------------------NAKAWN--AFNLSC--------KILLTTRF-----KQVT-DF 280
Query: 461 LVSVFHKQTCIFGFATHLFGSELKALYSL------ETVPRGISFRISPTSHSDLLNGDEP 514
L + + + L E+K+L + +PR + +P S +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLS-I------ 332
Query: 515 VSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVN 574
++ +D DN D+ T + + SL VLE
Sbjct: 333 IAESIRDGLATWDNWKHV---------------------NCDKLTTIIES-SLNVLE--- 367
Query: 575 LMAGGYPHRMRFKAFNARYRLLAPFCKLRRTED-RLTEDCLLIL------QCVEEE---- 623
P R + L+ F + L ++ V
Sbjct: 368 ------PAEYR-----KMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 624 HMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAV 669
H S L+ + ++ I ++ L + + + HR+ V
Sbjct: 412 HKYS-LVEKQPKESTISIPSIYLELKVKLENEYAL------HRSIV 450
Score = 57.2 bits (137), Expect = 2e-08
Identities = 70/399 (17%), Positives = 119/399 (29%), Gaps = 113/399 (28%)
Query: 347 HFYNTHM-FKSSIE--SCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSLRG 403
H ++ HM F++ +D I S E +VDN C D+ + +LS +++ +
Sbjct: 1 HHHHHHMDFETGEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIM- 56
Query: 404 TAETYLGKVKAQHRHNPRLFD---PKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDD 460
+ RLF K + +Q F VL F
Sbjct: 57 -----SKDAVSGTL---RLFWTLLSKQEE----MVQKFVEEVLRINYKF----------- 93
Query: 461 LVSVFHKQTCIFGFATHLFGSELKALYSLETV--PRGISFRISPTSHSDLLNGDEPVSTL 518
L+S + T ++ + LY+ V +S R+ P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQP---------------- 136
Query: 519 TQDFHTRLDNLLRSLVHARPH---FVR----CVK-------ANSSETSGKFDRG----TV 560
+ +L L L RP + K S + K D +
Sbjct: 137 ----YLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 561 MRQIRSLQVLETVN----LMAGGYPHRMRFKAFNARYRLLAPFCKLRRT-EDRLTEDCLL 615
VLE + + + R + N + R+ + +LRR + + E+CLL
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 616 ILQCV-EEEHMKS------PLLT--QSEVSTSWVIGKR-HIFLSEGI-----RQQLEMLR 660
+L V + + LLT +V+ HI L + +L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 661 -------SDTRHRA------AV-LIQAVWRGTYAR-KRW 684
D + +I R A W
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Score = 56.8 bits (136), Expect = 3e-08
Identities = 85/637 (13%), Positives = 171/637 (26%), Gaps = 191/637 (29%)
Query: 33 DAEVTPRAAPVAVSCSAQLDDLIHLPGPLTE-DAVLKCL-------HARFNASQLFLNFK 84
D + P++ + ++D +I ++ + L +F L +N+K
Sbjct: 37 DVQDMPKS----ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 85 VALWERHLIVSVVIILVFFSVTVKLHLESYTP--LNLSYLQSGDTRQDDVEDAARFQAW- 141
L + E P + Y++ D +D + A++
Sbjct: 93 F-LMSP------------------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 142 -------KACLGVLGIPFMDVV---------RVLAAVLLLGNVQFVDKSS------SSGN 179
+ L L P +V+ +A + L + + K + N
Sbjct: 134 LQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKN 191
Query: 180 NGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLVKSLCDANMSNMTRDC 239
+ V + L + I R H+ + +L + L S +C
Sbjct: 192 CNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENC 246
Query: 240 L-----------AKA--LYCRTVATIVRRANSLKRLGSTLGT-LSSDSNESVHNQADVAS 285
L A L C+ + T R L + T +S D + +V S
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 286 QHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFG------------FEDPKPSQL 333
+ R + L + ++ +L
Sbjct: 306 LLLKYLDCRPQDLP----------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 334 EHLCINLC------AETMQHFYNTHMFKSSIESCRDENIHSDV------EVDYVDNVPCI 381
+ I AE + F +F +I + + +V D +
Sbjct: 356 TTI-IESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSD---VM 405
Query: 382 DLISSL-RTGLL---------SMLDVECSLRGTAETYLGKVKAQHRHNPRLFDPKPVDAR 431
+++ L + L+ S+ + L+ E A HR +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE----NEYALHR---SI--------- 449
Query: 432 CFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSL-E 490
+ H+ +D+ D + D H G HL E +L
Sbjct: 450 ---VDHYNIPKTFDSDDLI-----PPYLDQYFYSH-----IGH--HLKNIEHPERMTLFR 494
Query: 491 TVPRGISF---RISPTSHSDLLNGDEPVSTLTQD--------------FHTRLDNLLRSL 533
V F +I S + N + Q + ++ +L L
Sbjct: 495 MVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 534 VHARPHFVRCVKAN------SSETSGKFDRGTVMRQI 564
+ + + +E F+ +Q+
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFE--EAHKQV 587
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 41.4 bits (98), Expect = 3e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 661 SDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+D A + IQ RG RKR+ ++R
Sbjct: 1 ADKLRAACIRIQKTIRGWLLRKRYLCMQR 29
Score = 39.5 bits (93), Expect = 1e-04
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 665 HRAAVLIQAVWRGTYARKRWPLLRRN 690
RAA+ +Q RG AR LRR
Sbjct: 28 QRAAITVQRYVRGYQARCYAKFLRRT 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.42
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 257 NSLKRLGSTLGTLSSDSNESVHNQADV 283
+LK+L ++L + DS ++ +A +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 32.3 bits (73), Expect = 0.62
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 729 PPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPPSRP 779
P + R PQP PP ++ Q L L L+ ++
Sbjct: 16 PAPVQRYIPQPQPPAPPRRRRGP--SQLQQLVAALGALALQPKQKQKRAQK 64
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 31.2 bits (70), Expect = 1.7
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 520 QDFHTRLDNLLRSLVH-ARPHFVRCVKANSSETSGKFDRGTV----------MRQIRSLQ 568
+D + +L + +R V A++ S + R TV + ++
Sbjct: 303 LAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLPVVR 362
Query: 569 VLETVNLMAGGYPH-----RMRFKAFNARYRLLAPFCKLRRTED 607
LE + PH + A Y LA F L D
Sbjct: 363 RLEEALVPFAARPHWGKVFTVPAGELRALYPRLADFGALAGALD 406
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.7 bits (65), Expect = 3.6
Identities = 16/87 (18%), Positives = 28/87 (32%)
Query: 717 NACLPSTSKASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVPP 776
N A+ TL + Q G P P P + K ++Q L + P +
Sbjct: 13 NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 72
Query: 777 SRPYTVTGNSKISYPQTRVMKMPYPED 803
+ P S+++ P +
Sbjct: 73 TTPSQPAEASEVAGGTQPAAGAQEPGE 99
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 29.4 bits (67), Expect = 4.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 452 TNKDVVPD-----DLVSVFH-----KQTCIFGFATHLFGSELKALYSLETVPRGISFRIS 501
T + +PD D S++ K +G +G E + E + + + I
Sbjct: 212 TKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIERFWGKE----FIRERL-DDVDYLIH 266
Query: 502 PTS 504
P S
Sbjct: 267 PNS 269
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 28.9 bits (64), Expect = 7.2
Identities = 15/178 (8%), Positives = 34/178 (19%), Gaps = 7/178 (3%)
Query: 244 LYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSKSMA 303
Y + + + N + L G D + +G +KS A
Sbjct: 190 FYAKIYKAVRQHCNIFEMLRIDEGLRLK-------IYKDTEGYYTIGIGHLLTKSPSLNA 242
Query: 304 ALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRD 363
A + + + G++ E ++ + + + +
Sbjct: 243 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALIN 302
Query: 364 ENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSLRGTAETYLGKVKAQHRHNPR 421
L L T +
Sbjct: 303 MVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,883,171
Number of extensions: 775146
Number of successful extensions: 1599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 48
Length of query: 863
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 761
Effective length of database: 3,853,851
Effective search space: 2932780611
Effective search space used: 2932780611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)