RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6222
(863 letters)
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 337 bits (865), Expect = e-104
Identities = 153/591 (25%), Positives = 232/591 (39%), Gaps = 83/591 (14%)
Query: 108 KLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVL 163
L L Y Q G D ++DA + +LGI M + R+LA +L
Sbjct: 214 TLRLG--NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGIL 271
Query: 164 LLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQL 223
LGNV+F + S S L L+GV + + R +
Sbjct: 272 HLGNVEFASRDSDSC-------AIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATET 324
Query: 224 VKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADV 283
+ RD LAK +Y IV N L S +
Sbjct: 325 YIKPISKLHAINARDALAKHIYANLFNWIVDHVNK---------ALHSTVKQHSFI---- 371
Query: 284 ASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAE 343
G+LD++GFE + + E CIN E
Sbjct: 372 ----------------------------------GVLDIYGFETFEINSFEQFCINYANE 397
Query: 344 TMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-R 402
+Q +N H+FK E E I +D+ DN PCI+LI + + G+L +LD EC + +
Sbjct: 398 KLQQQFNMHVFKLEQEEYMKEQIPWT-LIDFYDNQPCINLIEA-KMGVLDLLDEECKMPK 455
Query: 403 GTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLV 462
G+ +T+ K+ H + LF+ + + F I+HFA +V Y FLE NKD V ++ +
Sbjct: 456 GSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQI 515
Query: 463 SVFHKQTCIFGFATHLFGSELKALYSLETVPRG----ISFRISPTSHSDLLNGDEPVSTL 518
V K + F LF E KA+ P G + P E T+
Sbjct: 516 KVL-KSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTV 574
Query: 519 TQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAG 578
F L L+ +L PH+VRC+K N + FD ++Q+R+ VLET+ + A
Sbjct: 575 GHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAA 634
Query: 579 GYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTS 638
G+P R ++ F +RYR+L + + C +L+ + +
Sbjct: 635 GFPSRWTYQEFFSRYRVLMKQKDVLSDRK---QTCKNVLEKLILDK------------DK 679
Query: 639 WVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+ GK IF G LE +R+D A + IQ RG RK++ +RR
Sbjct: 680 YQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 730
Score = 36.3 bits (83), Expect = 0.019
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLF 80
+DL L L E AVL L RF S+L
Sbjct: 10 NDLTALS-YLHEPAVLHNLKVRFIDSKLI 37
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 324 bits (832), Expect = 4e-99
Identities = 125/592 (21%), Positives = 223/592 (37%), Gaps = 96/592 (16%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLL 164
+ L + S++ G D+++D F+ +LG + + A++L
Sbjct: 250 DVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILH 309
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
+G ++F + +G + VA L G+ + L + + ++V
Sbjct: 310 MGEMKFKQRPREEQ-------AESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMV 362
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ N + LAK+LY R +VRR N TL + + +
Sbjct: 363 TKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNK---------TLDTKAKRNY------- 406
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
IG+LD+ GFE + E LCIN E
Sbjct: 407 -------------------------------YIGVLDIAGFEIFDFNSFEQLCINYTNER 435
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RG 403
+Q F+N HMF E + E I + +D+ ++ + G+LS+L+ EC +
Sbjct: 436 LQQFFNHHMFILEQEEYKKEGIAWE-FIDFGMDLQMCIDLIEKPMGILSILEEECMFPKA 494
Query: 404 TAETYLGKVKAQHRHNPRLFDPKPVDAR------CFTIQHFAGRVLYDTSDFLETNKDVV 457
+++ K+ H R+F R F + H+AG V Y + +LE NKD +
Sbjct: 495 DDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPI 554
Query: 458 PDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVST 517
+++V++ + L+ P G + S + T
Sbjct: 555 NENVVALLGASKEPL----------VAELFKAPEEPAGGGKKKKGKSSA--------FQT 596
Query: 518 LTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMA 577
++ L+ L+++L PHFVRC+ N + G D V+ Q++ VLE + +
Sbjct: 597 ISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICR 656
Query: 578 GGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVST 637
G+P R+ + F RY +LAP + D IL ++ +
Sbjct: 657 KGFPSRLIYSEFKQRYSILAPNAIPQGFVDGK-TVSEKILAGLQMDP------------A 703
Query: 638 SWVIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
+ +G +F G+ LE +R + + + QA RG RK + L+
Sbjct: 704 EYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQD 755
Score = 35.5 bits (81), Expect = 0.028
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 50 QLDDLIHLPGPLTEDAVLKCLHARFNASQLF 80
+L+D+ ++ L E +VL L +R+ + ++
Sbjct: 36 KLEDMANMT-YLNEASVLYNLRSRYTSGLIY 65
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 320 bits (820), Expect = 3e-97
Identities = 131/590 (22%), Positives = 219/590 (37%), Gaps = 90/590 (15%)
Query: 108 KLHLESYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLL 164
+ L + P + Y+ G+ ++D A + + +LG + ++ AV+
Sbjct: 252 DMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMH 311
Query: 165 LGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLV 224
GN++F K +G + A L+G+ SA L + + + V
Sbjct: 312 YGNLKFKQKQREEQ-------AEPDGTEVADKAAYLMGLNSAELLKALCYPRVGVGNEAV 364
Query: 225 KSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVA 284
+ + + LAKA+Y + +V R N
Sbjct: 365 TKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQ-------------------------- 398
Query: 285 SQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAET 344
+ IG+LD+ GFE + E LCIN E
Sbjct: 399 ---------------------QLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEK 437
Query: 345 MQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RG 403
+Q F+N HMF E + E I + +D CI+LI G+ S+L+ EC +
Sbjct: 438 LQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK-PMGIFSILEEECMFPKA 496
Query: 404 TAETYLGKVKAQHRHNPRLFD-PKPVDARC---FTIQHFAGRVLYDTSDFLETNKDVVPD 459
T ++ K+ +H F PKP + F++ H+AG V Y+ S +LE NKD + +
Sbjct: 497 TDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNE 556
Query: 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLT 519
++ ++ K + + L A Y E G S T++
Sbjct: 557 TVIGLYQKSSVKTL-------ALLFATYGGEAEGGGGKKGGKKKGSS--------FQTVS 601
Query: 520 QDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGG 579
F L+ L+ +L PHFVRC+ N ++T G + V+ Q+R VLE + + G
Sbjct: 602 ALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKG 661
Query: 580 YPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSW 639
+P R+ + F RYR+L + +L + +H T +
Sbjct: 662 FPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDH------------TQY 709
Query: 640 VIGKRHIFLSEGIRQQLEMLRSDTRHRAAVLIQAVWRGTYARKRWPLLRR 689
G +F G+ LE +R D QA RG R + +
Sbjct: 710 AFGHTKVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVE 759
Score = 33.2 bits (75), Expect = 0.15
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 50 QLDDLIHLPGPLTEDAVLKCLHARFNASQLF 80
+++D+ + L E AVL L R+ A ++
Sbjct: 38 KIEDMAMMT-HLHEPAVLYNLKERYAAWMIY 67
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 312 bits (801), Expect = 2e-95
Identities = 128/601 (21%), Positives = 242/601 (40%), Gaps = 81/601 (13%)
Query: 68 KCLHARFNASQLFLNFKVALWERHLIVSVVI-ILVFFSVTVKLHLESYTPLNLSYLQSGD 126
+ A L + + + + ++ S ++ L N ++L +G
Sbjct: 182 YIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH 241
Query: 127 TRQDDVEDAARFQAWKACLGVLGIP---FMDVVRVLAAVLLLGNVQFVDKSSSSGNNGTV 183
+D FQ + ++G ++RV+++VL LGN+ F + ++
Sbjct: 242 VPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTD------ 295
Query: 184 TEVGVNGESTLNSVASLLGVPSASLFRGITTRTHNARGQLVKSLCDANMSNMTRDCLAKA 243
+ + + V L+G+ R I T +V+ ++ + LAKA
Sbjct: 296 -QASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKA 354
Query: 244 LYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVASQHASTVGTAGSKSSKSMA 303
+ R I+ R N+++
Sbjct: 355 KFERLFRWILTR-----------------VNKALDKT----------------------- 374
Query: 304 ALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRD 363
+ +GILD+ GFE + + E LCIN E +Q +N MF E +
Sbjct: 375 ------KRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQR 428
Query: 364 ENIHSDVEVDYVDNVPCIDLISSLR--TGLLSMLDVECSL-RGTAETYLGKVKAQHRHNP 420
E I + +D PCI+LI G+L++LD EC + T +++ K+ + ++
Sbjct: 429 EGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHA 488
Query: 421 RLFDPKPV-DARCFTIQHFAGRVLYDTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLF 479
+ K + D F I H+AG+V Y+ S +L N D + D++ S+ ++ + F L+
Sbjct: 489 KFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSD--KFVADLW 546
Query: 480 GSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPH 539
++ + L+ + + + S + T+ Q + +L L+ +L + P+
Sbjct: 547 -KDVDRIVGLDQMAKMTESSLPSASKTK----KGMFRTVGQLYKEQLTKLMTTLRNTNPN 601
Query: 540 FVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPF 599
FVRC+ N + +GK D V+ Q+R VLE + + G+P+R+ F+ F RY +LA
Sbjct: 602 FVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAAN 661
Query: 600 CKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEML 659
+ D + C+L+++ +E + + IG+ IF G+ LE
Sbjct: 662 AIPKGFMDGK-QACILMIKALELDP------------NLYRIGQSKIFFRTGVLAHLEEE 708
Query: 660 R 660
R
Sbjct: 709 R 709
Score = 35.9 bits (82), Expect = 0.022
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 50 QLDDLIHLPGPLTEDAVLKCLHARFNASQLF 80
+++D+ L L E +VL L R+ + ++
Sbjct: 6 KVEDMAELT-CLNEASVLHNLRERYFSGLIY 35
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 295 bits (756), Expect = 6e-89
Identities = 132/576 (22%), Positives = 223/576 (38%), Gaps = 99/576 (17%)
Query: 91 HLIVSVVIILVFFSVTVKLHLESYTPLNLSYL-QSGDTRQDDVEDAARFQAWKACLGVLG 149
+L + K L P + +YL QSG V D+ F+ + + ++G
Sbjct: 229 RNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVG 288
Query: 150 IP---FMDVVRVLAAVLLLGNVQFVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSA 206
M + +++A +L LGN++F + + ++ LN+ +++ GV +
Sbjct: 289 FSQEEQMSIFKIIAGILHLGNIKFEKGAGEG--------AVLKDKTALNAASTVFGVNPS 340
Query: 207 SLFRGITTRTHNARGQLVKSLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTL 266
L + + A LV + S+ +RD L KALY R +V++ N
Sbjct: 341 VLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN--------- 391
Query: 267 GTLSSDSNESVHNQADVASQHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFE 326
N + IG+LD+ GFE
Sbjct: 392 ---------------------------------------NVLCQERKAYFIGVLDISGFE 412
Query: 327 DPKPSQLEHLCINLCAETMQHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISS 386
K + E LCIN E +Q F+N HMFK E E I+ +D+ IDLI
Sbjct: 413 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDG 472
Query: 387 LR-TGLLSMLDVECSLR-GTAETYLGKVKAQHRHNPRLFDPKPVDARCFTIQHFAGRVLY 444
+ G+L++LD + T T + K+ + ++ F + H+AG+V+Y
Sbjct: 473 RQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMY 532
Query: 445 DTSDFLETNKDVVPDDLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTS 504
+ D+LE NKD + DL F + T LF A +G +F
Sbjct: 533 EIQDWLEKNKDPLQQDLELCFKDSSD--NVVTKLFNDPNIA----SRAKKGANFI----- 581
Query: 505 HSDLLNGDEPVSTLTQDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQI 564
T+ + +L +L+ +L PHFVRC+ N+ + K + V+ Q+
Sbjct: 582 ------------TVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQL 629
Query: 565 RSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEH 624
R VLE + + G+P+R+ + F RY LLAP + + + +L+ + +
Sbjct: 630 RCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQ--KATDAVLKHLNIDP 687
Query: 625 MKSPLLTQSEVSTSWVIGKRHIFLSEGIRQQLEMLR 660
+ G IF G ++E R
Sbjct: 688 ------------EQYRFGITKIFFRAGQLARIEEAR 711
Score = 34.7 bits (79), Expect = 0.055
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLF 80
+D+ L L E AV L R+N ++
Sbjct: 42 EDMSELS-YLNEPAVFHNLRVRYNQDLIY 69
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 283 bits (725), Expect = 6e-85
Identities = 134/562 (23%), Positives = 217/562 (38%), Gaps = 108/562 (19%)
Query: 113 SYTPLNLSYLQSGDTRQDDVEDAARFQAWKACLGVLGIPF---MDVVRVLAAVLLLGNVQ 169
+Y L +SG ++D+ F+ + LG+ + R+LAA+L +GN+
Sbjct: 217 AYEYLK----KSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNIT 272
Query: 170 FVDKSSSSGNNGTVTEVGVNGESTLNSVASLLGVPSASLFRGITTRT----HNARGQLVK 225
F + + TV V+ +L + AS L SL + R+ R ++
Sbjct: 273 FAEAAEQRTGTTTVK---VSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVIS 329
Query: 226 SLCDANMSNMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESVHNQADVAS 285
D N + +RD LAKALY R +V + N+ ++ + +
Sbjct: 330 VPMDCNQAAYSRDALAKALYERLFNWLVSKINT---------IINCTTEKGPV------- 373
Query: 286 QHASTVGTAGSKSSKSMAALNNAVRHATDGSIGILDMFGFEDPKPSQLEHLCINLCAETM 345
IGILD++GFE + + E L IN C E +
Sbjct: 374 -------------------------------IGILDIYGFEVFQNNSFEQLNINFCNEKL 402
Query: 346 QHFYNTHMFKSSIESCRDENIHSDVEVDYVDNVPCIDLISSLRTGLLSMLDVECSL-RGT 404
Q + KS E E I ++Y +N P +LI GL+S+LD C + + T
Sbjct: 403 QQLFIELTLKSEQEEYVREGIEWK-NIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 461
Query: 405 AETYLGKVKAQHRHNPRLFDPKPVDAR-----CFTIQHFAGRVLYDTSDFLETNKDVVPD 459
+T+L + Q NP L R CF ++H+AG V YD FL+ NKD +
Sbjct: 462 DQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFG 521
Query: 460 DLVSVFHKQTCIFGFATHLFGSELKALYSLETVPRGISFRISPTSHSDLLNGDEPVSTLT 519
DL+S + ++ L+ T P R T
Sbjct: 522 DLISSMQSSSDPL----------VQGLFP-PTRPEDSKKR---------------PETAG 555
Query: 520 QDFHTRLDNLLRSLVHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGG 579
F ++ L+ +L+ PH+VRC+K+N ++ +G D V Q+R L +LE V + G
Sbjct: 556 SQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAG 615
Query: 580 YPHRMRFKAFNARYRLLAPFCKLRRTEDRLTEDCLLILQCVEEEHMKSPLLTQSEVSTSW 639
+ R+ + F RY++L + LILQ +
Sbjct: 616 FAGRIEYTRFYNRYKMLCKK-TWPSFNGTAKQATELILQQHNIDK------------EEI 662
Query: 640 VIGKRHIFL-SEGIRQQLEMLR 660
+GK +F+ + E R
Sbjct: 663 RMGKTKVFIRNPTTLFYFEEKR 684
Score = 36.2 bits (83), Expect = 0.019
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 52 DDLIHLPGPLTEDAVLKCLHARFNASQLF 80
D + L +TE+A ++ L R + ++
Sbjct: 3 PDFVLLN-QITENAFIENLTMRHKSDNIY 30
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 29.1 bits (65), Expect = 0.37
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 783 TGNSKISYPQTRVMKMPYPEDGKGDVTLGKGEAVVVVGASSRRGHLVVEHCNTSIHVPFQ 842
+G+S + + + + + +++ G V S G L + +P
Sbjct: 3 SGSSGTPFRKAKALY-ACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPEN 61
Query: 843 FLELKPGPA 851
++E GP+
Sbjct: 62 YVEFLSGPS 70
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 28.8 bits (64), Expect = 2.0
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 30/129 (23%)
Query: 481 SELK-ALYSLET---VPRGISFRISPTSHSDLLNGDEPVSTLTQDFHTRLDNLLRSL--- 533
S +K ++ + T + GI+ ++ + +NGD+P++ ++ L + L
Sbjct: 12 SSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKR 71
Query: 534 -------------VHARPHFVRCVKANSSETSGKFDRGTVMRQIRSLQVLETVNLMAGGY 580
H F + V ++ IR + L ++ A
Sbjct: 72 DLTDSVALIGHRIAHGGELFTQSVIITD----------EIIDNIRRVSPLAPLHNYANLS 121
Query: 581 PHRMRFKAF 589
F
Sbjct: 122 GIDAARHLF 130
>d1jmaa_ b.1.1.1 (A:) HSV glycoprotein D {Herpes simplex virus type
1 [TaxId: 10298]}
Length = 259
Score = 28.3 bits (63), Expect = 3.5
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 12/62 (19%)
Query: 726 ASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTLFGLDLERPPPVP-----PSRPY 780
A A +L P G P ++ D +++ +P PS P
Sbjct: 3 ALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRV-------YHIQAGLPDPFQPPSLPI 55
Query: 781 TV 782
TV
Sbjct: 56 TV 57
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 27.1 bits (60), Expect = 3.8
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 723 TSKASAPPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQTCTL 763
+S +S P A TPP P + I+++ L
Sbjct: 2 SSGSSGAPAEPAAPKSGEAETPPKHPGVLKVEAILEKVQGL 42
>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 26.5 bits (58), Expect = 7.1
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 729 PPTLTRPRPQPIAGTPPPDPNEKCDQKIIQQ 759
P L +P +P P P + +++
Sbjct: 93 PCNLRKPCNRPSGLEPQPGVFDCLRDAMVRD 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,076,621
Number of extensions: 142204
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 24
Length of query: 863
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 770
Effective length of database: 1,130,706
Effective search space: 870643620
Effective search space used: 870643620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)