Query psy6223
Match_columns 107
No_of_seqs 7 out of 9
Neff 1.1
Searched_HMMs 29240
Date Fri Aug 16 20:52:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ef1_C Moesin; membrane, FERM 68.7 2.4 8.1E-05 28.3 1.8 20 8-27 29-48 (90)
2 1zme_C Proline utilization tra 63.7 4.4 0.00015 22.8 2.1 23 7-29 46-68 (70)
3 1rtm_1 Mannose-binding protein 47.5 9.3 0.00032 23.6 1.8 17 10-26 9-25 (149)
4 3fwb_B Nuclear mRNA export pro 46.8 11 0.00037 23.1 2.0 18 5-22 2-19 (55)
5 1gu4_A CAAT/enhancer binding p 43.6 16 0.00056 23.3 2.5 23 6-28 51-73 (78)
6 2i1j_A Moesin; FERM, coiled-co 42.9 10 0.00035 30.5 1.8 18 9-26 515-532 (575)
7 3r8s_Y 50S ribosomal protein L 40.8 12 0.0004 22.7 1.4 27 8-34 12-38 (63)
8 3twe_A Alpha4H; unknown functi 40.3 18 0.00063 20.2 2.1 15 6-20 9-23 (27)
9 3pbf_A Pulmonary surfactant-as 39.8 16 0.00054 22.2 1.9 20 9-28 6-25 (148)
10 1buu_A Protein (mannose-bindin 36.3 17 0.00059 23.2 1.8 20 9-28 20-39 (168)
11 3v2d_2 50S ribosomal protein L 36.0 13 0.00046 23.1 1.2 27 8-34 19-45 (72)
12 1htn_A Tetranectin; plasminoge 34.6 14 0.00047 23.7 1.1 20 8-27 25-44 (182)
13 1hjb_A Ccaat/enhancer binding 34.5 25 0.00084 22.9 2.3 24 6-29 51-74 (87)
14 1hwt_C Protein (heme activator 33.1 17 0.00058 20.8 1.2 21 6-26 59-79 (81)
15 3j21_W 50S ribosomal protein L 31.9 33 0.0011 21.3 2.5 25 8-32 12-36 (72)
16 2yy0_A C-MYC-binding protein; 31.5 33 0.0011 20.3 2.4 24 6-29 27-50 (53)
17 3trt_A Vimentin; cytoskeleton, 31.3 34 0.0012 20.2 2.4 20 6-25 57-76 (77)
18 3jyw_X 60S ribosomal protein L 31.0 26 0.00088 22.9 1.9 26 8-33 14-39 (86)
19 2zhg_A Redox-sensitive transcr 29.6 38 0.0013 22.5 2.7 47 10-57 102-150 (154)
20 1vq8_V 50S ribosomal protein L 29.6 32 0.0011 21.2 2.1 26 8-33 15-40 (71)
21 1jnm_A Proto-oncogene C-JUN; B 29.1 35 0.0012 19.9 2.1 23 6-28 37-59 (62)
22 1r73_A TM1492, 50S ribosomal p 27.8 41 0.0014 20.4 2.3 26 8-33 12-37 (66)
23 2xdj_A Uncharacterized protein 27.4 30 0.001 22.2 1.8 22 7-28 22-43 (83)
24 1am9_A Srebp-1A, protein (ster 27.1 34 0.0012 21.0 1.9 21 9-29 54-74 (82)
25 2zjr_V 50S ribosomal protein L 26.3 44 0.0015 20.3 2.3 26 8-33 12-37 (67)
26 1t2k_D Cyclic-AMP-dependent tr 25.5 48 0.0016 19.2 2.3 21 8-28 39-59 (61)
27 2er8_A Regulatory protein Leu3 25.3 31 0.0011 19.4 1.4 17 9-25 53-69 (72)
28 3st1_A Necrosis-and ethylene-i 23.1 26 0.0009 25.9 1.0 33 59-92 13-48 (214)
29 1zxa_A CGMP-dependent protein 22.9 39 0.0013 21.4 1.6 30 9-38 29-58 (67)
30 3bs2_A Lipocalin; beta barrel, 21.9 24 0.00081 23.9 0.5 19 67-85 130-148 (148)
31 1zbd_B Rabphilin-3A; G protein 21.4 45 0.0015 22.5 1.8 18 10-27 32-49 (134)
32 2gkw_A TNF receptor-associated 21.2 48 0.0017 22.1 1.9 11 8-18 3-13 (192)
33 3ol1_A Vimentin; structural ge 21.2 55 0.0019 21.4 2.1 19 8-26 86-104 (119)
No 1
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=68.71 E-value=2.4 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=17.8
Q ss_pred hHHHHHHHhhhhhhhhhhhh
Q psy6223 8 VHLQQRLRSLSTELVTLRNK 27 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnr 27 (107)
-|||+.|+.|.+||-.||..
T Consensus 29 k~lq~QL~~Lk~ELe~lk~~ 48 (90)
T 1ef1_C 29 ERVQKHLKALTSELANARDE 48 (90)
T ss_dssp HHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 38999999999999999863
No 2
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.66 E-value=4.4 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.5
Q ss_pred HhHHHHHHHhhhhhhhhhhhhcc
Q psy6223 7 AVHLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 7 avhlqqrl~slstelvtlrnrlh 29 (107)
.-.|++|+..|..+|..|++.|.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999998764
No 3
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=47.54 E-value=9.3 Score=23.61 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=8.4
Q ss_pred HHHHHHhhhhhhhhhhh
Q psy6223 10 LQQRLRSLSTELVTLRN 26 (107)
Q Consensus 10 lqqrl~slstelvtlrn 26 (107)
||++++.|.++|.+|++
T Consensus 9 l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 9 MEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444455555555544
No 4
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=46.82 E-value=11 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=16.4
Q ss_pred hhHhHHHHHHHhhhhhhh
Q psy6223 5 NEAVHLQQRLRSLSTELV 22 (107)
Q Consensus 5 neavhlqqrl~slstelv 22 (107)
||++.-++.+.+||.||-
T Consensus 2 ~~~~~R~~iI~sLs~eLy 19 (55)
T 3fwb_B 2 SEANYRKDFIDTMTRELY 19 (55)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 788889999999999985
No 5
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=43.62 E-value=16 Score=23.28 Aligned_cols=23 Identities=48% Similarity=0.621 Sum_probs=18.9
Q ss_pred hHhHHHHHHHhhhhhhhhhhhhc
Q psy6223 6 EAVHLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 6 eavhlqqrl~slstelvtlrnrl 28 (107)
|-..|+.++..|..|+-+||+-|
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888999999999998865
No 6
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.86 E-value=10 Score=30.52 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhhhhhhhh
Q psy6223 9 HLQQRLRSLSTELVTLRN 26 (107)
Q Consensus 9 hlqqrl~slstelvtlrn 26 (107)
|||++|+.|++||-.+|+
T Consensus 515 ~lq~qL~~L~~el~~~r~ 532 (575)
T 2i1j_A 515 RLHNQLKALKQDLARSCD 532 (575)
T ss_dssp HHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 899999999999999986
No 7
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=40.84 E-value=12 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAPP 34 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~~ 34 (107)
-.|++.|.+|-.||..||-..-+|+..
T Consensus 12 ~EL~~~l~elk~Elf~LR~q~atgql~ 38 (63)
T 3r8s_Y 12 EELNTELLNLLREQFNLRMQAASGQLQ 38 (63)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 468999999999999999877766543
No 8
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.31 E-value=18 Score=20.22 Aligned_cols=15 Identities=47% Similarity=0.620 Sum_probs=8.2
Q ss_pred hHhHHHHHHHhhhhh
Q psy6223 6 EAVHLQQRLRSLSTE 20 (107)
Q Consensus 6 eavhlqqrl~slste 20 (107)
|--.||.||+.|...
T Consensus 9 eledlqerlrklrkk 23 (27)
T 3twe_A 9 ELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666655443
No 9
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=39.83 E-value=16 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhhhhhhhhc
Q psy6223 9 HLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrl 28 (107)
+||++|..|..+|..|++.+
T Consensus 6 ~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 6 ELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888776
No 10
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=36.26 E-value=17 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhhhhhhhhhc
Q psy6223 9 HLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrl 28 (107)
.+++||+.|..+|..|+++|
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l 39 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKL 39 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 11
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=35.99 E-value=13 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.7
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAPP 34 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~~ 34 (107)
-.|+.+|.+|-.||..||-..-+|+..
T Consensus 19 eEL~~~L~elk~ELf~LR~q~atgql~ 45 (72)
T 3v2d_2 19 VELEKLVREKKRELMELRFQASIGQLS 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999987777653
No 12
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=34.65 E-value=14 Score=23.75 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=15.9
Q ss_pred hHHHHHHHhhhhhhhhhhhh
Q psy6223 8 VHLQQRLRSLSTELVTLRNK 27 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnr 27 (107)
-.|++||..|..||..|++.
T Consensus 25 ~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 25 EELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999988874
No 13
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.45 E-value=25 Score=22.89 Aligned_cols=24 Identities=46% Similarity=0.603 Sum_probs=20.4
Q ss_pred hHhHHHHHHHhhhhhhhhhhhhcc
Q psy6223 6 EAVHLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 6 eavhlqqrl~slstelvtlrnrlh 29 (107)
|-..|+.++..|..|+-+||+-|-
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998775
No 14
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=33.10 E-value=17 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=11.2
Q ss_pred hHhHHHHHHHhhhhhhhhhhh
Q psy6223 6 EAVHLQQRLRSLSTELVTLRN 26 (107)
Q Consensus 6 eavhlqqrl~slstelvtlrn 26 (107)
+.-.|++||+.|.+.|..|++
T Consensus 59 ~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344577888888777766543
No 15
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.88 E-value=33 Score=21.25 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.3
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQA 32 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~ 32 (107)
-.|+.+|.+|-.||..||-..-+|+
T Consensus 12 ~EL~~~L~elk~ELf~LR~q~atgq 36 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKERGLLTMGT 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999887777
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.53 E-value=33 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.9
Q ss_pred hHhHHHHHHHhhhhhhhhhhhhcc
Q psy6223 6 EAVHLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 6 eavhlqqrl~slstelvtlrnrlh 29 (107)
|--.||+|+..|..++-.|+.||-
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678888888888888888763
No 17
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.28 E-value=34 Score=20.18 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=13.2
Q ss_pred hHhHHHHHHHhhhhhhhhhh
Q psy6223 6 EAVHLQQRLRSLSTELVTLR 25 (107)
Q Consensus 6 eavhlqqrl~slstelvtlr 25 (107)
|...|.+++.+|..||-.||
T Consensus 57 Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44456667777777776665
No 18
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.98 E-value=26 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAP 33 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~ 33 (107)
-.|+++|.+|-.||..||-..-+|+.
T Consensus 14 eEL~~~L~eLK~ELf~LRfq~atgql 39 (86)
T 3jyw_X 14 EQLASQLVDLKKELAELKVQKLSRPS 39 (86)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999988777765
No 19
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=29.57 E-value=38 Score=22.48 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhhhhhccccC--CCCCCCCCCCCCCCCCCCCCCCCcc
Q psy6223 10 LQQRLRSLSTELVTLRNKLHVQA--PPTAPPIKPSLPPVAPGNTGPAPLL 57 (107)
Q Consensus 10 lqqrl~slstelvtlrnrlhv~~--~~~ap~ikpslppvapgntgpapll 57 (107)
|++++..|..-+-.|...++-.. ...-|.+.+-....++| .||..|.
T Consensus 102 l~~qi~~L~~~~~~L~~~~~~~~~~~~~C~il~~~~~~~~~g-~g~~~~~ 150 (154)
T 2zhg_A 102 LDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEG-TGARLLE 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCGGGCTTTCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCcchhhHHhhccC-CCccccc
Confidence 44455555444445555554322 22356666666667777 6776654
No 20
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=29.56 E-value=32 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.2
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAP 33 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~ 33 (107)
-.|+..|..|-.||..||-..-+|++
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~atggq 40 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQAAGGA 40 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999977666443
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.06 E-value=35 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=13.0
Q ss_pred hHhHHHHHHHhhhhhhhhhhhhc
Q psy6223 6 EAVHLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 6 eavhlqqrl~slstelvtlrnrl 28 (107)
|-..|+.++..|..|+..|++.|
T Consensus 37 ~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 37 QNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777776654
No 22
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=27.83 E-value=41 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.0
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAP 33 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~ 33 (107)
-.|++.|..|-.||..||-..-+|+.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql 37 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAMGQL 37 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 46899999999999999976655443
No 23
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.41 E-value=30 Score=22.17 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.2
Q ss_pred HhHHHHHHHhhhhhhhhhhhhc
Q psy6223 7 AVHLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 7 avhlqqrl~slstelvtlrnrl 28 (107)
-..||++|..|..|+-.||..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3578899999999999998654
No 24
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.09 E-value=34 Score=20.99 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.4
Q ss_pred HHHHHHHhhhhhhhhhhhhcc
Q psy6223 9 HLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrlh 29 (107)
+||+++..|..|...|+.++.
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998765
No 25
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=26.29 E-value=44 Score=20.30 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.1
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAP 33 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~ 33 (107)
-.|+..|..|-.||..||-..-+|+.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql 37 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAAAGQL 37 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999976665443
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.48 E-value=48 Score=19.18 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=11.7
Q ss_pred hHHHHHHHhhhhhhhhhhhhc
Q psy6223 8 VHLQQRLRSLSTELVTLRNKL 28 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrl 28 (107)
-.|+..+..|..|+..|++.|
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666665543
No 27
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.29 E-value=31 Score=19.38 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy6223 9 HLQQRLRSLSTELVTLR 25 (107)
Q Consensus 9 hlqqrl~slstelvtlr 25 (107)
.|++|+..|...|-.|+
T Consensus 53 ~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 53 AIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666655555443
No 28
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=23.10 E-value=26 Score=25.86 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=21.6
Q ss_pred cCCcchhhhhcch---hhhhhccCCCCCccccCCCCC
Q psy6223 59 KPIPQHQKAANIV---VADVLSEKCPPVPAVGGGGST 92 (107)
Q Consensus 59 kpipqhqkaaniv---vadvlsekcppvpavggggst 92 (107)
.|+||-+|+|-.- .-|+ +.-|=|.|||+.-|.+
T Consensus 13 ~pf~q~~~aa~~kfkP~l~~-~~gC~p~pAV~~~G~~ 48 (214)
T 3st1_A 13 AKLPASGSPLETKFQPQLHI-GNGCHSYPAVDAQGNW 48 (214)
T ss_dssp CCCCCCCCHHHHHTCCEEEE-CSSCCCBCSBCTTSCE
T ss_pred cCCCchhHHHHhhcCCceEe-CCCcccccccCCCCCc
Confidence 5777766665400 1244 5689999999976655
No 29
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.87 E-value=39 Score=21.40 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHhhhhhhhhhhhhccccCCCCCCC
Q psy6223 9 HLQQRLRSLSTELVTLRNKLHVQAPPTAPP 38 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrlhv~~~~~ap~ 38 (107)
.|+++|..-..|+-.||+.||--+.--.|.
T Consensus 29 eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~ 58 (67)
T 1zxa_A 29 ELEKRLSEKEEEIQELKRKLHKCQSVLPVP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 577888888999999999999755544433
No 30
>3bs2_A Lipocalin; beta barrel, ligand binding protein; 1.15A {Argas monolakensis} PDB: 3bu1_A 3bu9_A
Probab=21.92 E-value=24 Score=23.86 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=14.2
Q ss_pred hhcchhhhhhccCCCCCcc
Q psy6223 67 AANIVVADVLSEKCPPVPA 85 (107)
Q Consensus 67 aanivvadvlsekcppvpa 85 (107)
+....+-+|-.+.||++|+
T Consensus 130 ~~g~~~~~vY~~~C~~~~~ 148 (148)
T 3bs2_A 130 KGSRPEHVVYRSTCPNLPA 148 (148)
T ss_dssp TTTCCCEECCCTTSCCCCC
T ss_pred hcCCceeccccCCCCCCCC
Confidence 3444567788899999986
No 31
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.37 E-value=45 Score=22.51 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhhhhhhhh
Q psy6223 10 LQQRLRSLSTELVTLRNK 27 (107)
Q Consensus 10 lqqrl~slstelvtlrnr 27 (107)
-|+|++.|.++|..+|++
T Consensus 32 E~~ri~kL~~~l~~~k~~ 49 (134)
T 1zbd_B 32 EQERIGRLVDRLETMRKN 49 (134)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999976
No 32
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.22 E-value=48 Score=22.12 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=5.7
Q ss_pred hHHHHHHHhhh
Q psy6223 8 VHLQQRLRSLS 18 (107)
Q Consensus 8 vhlqqrl~sls 18 (107)
++|+||++.+.
T Consensus 3 ~~l~~~~~~~~ 13 (192)
T 2gkw_A 3 GLLESQLSRHD 13 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566654443
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.17 E-value=55 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=16.4
Q ss_pred hHHHHHHHhhhhhhhhhhh
Q psy6223 8 VHLQQRLRSLSTELVTLRN 26 (107)
Q Consensus 8 vhlqqrl~slstelvtlrn 26 (107)
+.|+.++.+|..||.-||+
T Consensus 86 ~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998874
Done!