Query psy6223
Match_columns 107
No_of_seqs 7 out of 9
Neff 1.1
Searched_HMMs 13730
Date Fri Aug 16 20:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqov1 a.2.2.1 (V:1-65) Ribos 68.4 1.2 9E-05 25.8 1.8 27 8-34 14-40 (65)
2 d1ef1c_ a.137.5.1 (C:) Moesin 60.9 1.9 0.00014 27.7 1.8 19 8-26 29-47 (90)
3 d2j0121 a.2.2.1 (2:12-62) Ribo 54.6 2.4 0.00017 23.7 1.3 32 8-39 8-39 (51)
4 d1ysja1 c.56.5.4 (A:4-177,A:29 29.6 7.4 0.00054 27.0 0.8 16 15-30 1-16 (261)
5 d1wjwa_ d.129.2.1 (A:) Phospho 28.1 8.6 0.00062 24.0 0.8 24 49-74 1-24 (112)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 27.5 14 0.001 20.2 1.6 21 9-29 37-57 (61)
7 d2gycw1 a.2.2.1 (W:1-60) Ribos 26.3 22 0.0016 19.7 2.4 24 9-32 13-36 (60)
8 d1r73a_ a.2.2.1 (A:) Ribosomal 22.7 27 0.002 19.6 2.3 24 9-32 13-36 (66)
9 d1x3aa1 a.240.1.1 (A:8-94) Syn 19.6 24 0.0017 21.1 1.7 22 3-25 1-22 (87)
10 d1am9a_ a.38.1.1 (A:) SREBP-1a 19.4 27 0.0019 19.6 1.8 22 8-29 53-74 (80)
No 1
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=68.37 E-value=1.2 Score=25.82 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAPP 34 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~~ 34 (107)
-.|+.+|..|..||..||..-|.+++.
T Consensus 14 ~eL~~~l~elk~El~~LR~~q~~~gql 40 (65)
T d1vqov1 14 AEREAELDDLKTELLNARAVQAAGGAP 40 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358999999999999999765665543
No 2
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.94 E-value=1.9 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=17.3
Q ss_pred hHHHHHHHhhhhhhhhhhh
Q psy6223 8 VHLQQRLRSLSTELVTLRN 26 (107)
Q Consensus 8 vhlqqrl~slstelvtlrn 26 (107)
-|||.+|+.|.+||-.+|.
T Consensus 29 k~lq~qL~~L~~EL~~~kd 47 (90)
T d1ef1c_ 29 ERVQKHLKALTSELANARD 47 (90)
T ss_dssp HHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4899999999999999885
No 3
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]}
Probab=54.59 E-value=2.4 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=25.5
Q ss_pred hHHHHHHHhhhhhhhhhhhhccccCCCCCCCC
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLHVQAPPTAPPI 39 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlhv~~~~~ap~i 39 (107)
-.|+++|.++..||..||=...+|+-.+.--|
T Consensus 8 ~eL~~~l~elk~el~~LRfq~atgql~n~~~i 39 (51)
T d2j0121 8 VELEKLVREKKRELMELRFQASIGQLSQNHKI 39 (51)
T ss_dssp HHHHHHHHHHHHHSSSSCCTTSSTTTGGGTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcchHHH
Confidence 36899999999999999988877766554444
No 4
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=29.59 E-value=7.4 Score=26.96 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=12.5
Q ss_pred Hhhhhhhhhhhhhccc
Q psy6223 15 RSLSTELVTLRNKLHV 30 (107)
Q Consensus 15 ~slstelvtlrnrlhv 30 (107)
|+|..||+.+|..||-
T Consensus 1 ~~~~~~li~~rr~lh~ 16 (261)
T d1ysja1 1 KAFHTRLINMRRDLHE 16 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 5677888888888884
No 5
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.12 E-value=8.6 Score=24.02 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=18.2
Q ss_pred CCCCCCCccccCCcchhhhhcchhhh
Q psy6223 49 GNTGPAPLLYKPIPQHQKAANIVVAD 74 (107)
Q Consensus 49 gntgpapllykpipqhqkaanivvad 74 (107)
|.+|+.--||..+||.+ -||-|.|
T Consensus 1 ~s~~~~~aly~~lPq~l--inv~V~d 24 (112)
T d1wjwa_ 1 GSSGSSGAIYVDLPNRQ--LKVKVAD 24 (112)
T ss_dssp CCCCCCCSCCCCCCEEE--EEECCCC
T ss_pred CCcccHHHHHHhCCcce--eeeEcCC
Confidence 66888899999999864 5665554
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.48 E-value=14 Score=20.16 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhhhhhhhhhcc
Q psy6223 9 HLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrlh 29 (107)
.||++.+.|..|...||...+
T Consensus 37 ~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 37 YLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999987664
No 7
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=26.26 E-value=22 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhhhhhhhccccC
Q psy6223 9 HLQQRLRSLSTELVTLRNKLHVQA 32 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrlhv~~ 32 (107)
.|+.+|..|..||..||-..-+|+
T Consensus 13 eL~~~l~~l~~el~~lRfq~~~gq 36 (60)
T d2gycw1 13 ELNTELLNLLREQFNLRMQAASGQ 36 (60)
T ss_dssp HHHHHHHHHHHHHHHCCCSTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 588999999999999996655554
No 8
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=22.73 E-value=27 Score=19.63 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhhhhhhhhhccccC
Q psy6223 9 HLQQRLRSLSTELVTLRNKLHVQA 32 (107)
Q Consensus 9 hlqqrl~slstelvtlrnrlhv~~ 32 (107)
.|+..|.+|..||..||-..-+|+
T Consensus 13 eL~~~l~~l~~el~~LRfq~~~gq 36 (66)
T d1r73a_ 13 ELKNLLEEKKRQLMELRFQLAMGQ 36 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 589999999999999997644443
No 9
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.62 E-value=24 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.9
Q ss_pred CchhHhHHHHHHHhhhhhhhhhh
Q psy6223 3 SSNEAVHLQQRLRSLSTELVTLR 25 (107)
Q Consensus 3 ssneavhlqqrl~slstelvtlr 25 (107)
|+||. .++++|.+|++..-|..
T Consensus 1 ~~~e~-~~keqi~aLs~D~~tfl 22 (87)
T d1x3aa1 1 TNDEE-TIQQQILALSADKRNFL 22 (87)
T ss_dssp SCTTH-HHHHHHHHHHTCSHHHH
T ss_pred CChHH-HHHHHHHHHhCCHHHhh
Confidence 45665 89999999999876654
No 10
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.39 E-value=27 Score=19.58 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.2
Q ss_pred hHHHHHHHhhhhhhhhhhhhcc
Q psy6223 8 VHLQQRLRSLSTELVTLRNKLH 29 (107)
Q Consensus 8 vhlqqrl~slstelvtlrnrlh 29 (107)
-+||++...|..|...|+.+++
T Consensus 53 ~~L~~~~~~L~~e~~~lk~~~~ 74 (80)
T d1am9a_ 53 RFLQHSNQKLKQENLSLRTAVH 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888899999988888765
Done!