RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6223
(107 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.005
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 11 QQRLRSLSTELVTLRNKLHVQAPPTAP--PIKPSL 43
+Q L+ L L KL+ A +AP IK ++
Sbjct: 19 KQALKKLQASL-----KLY--ADDSAPALAIKATM 46
Score = 24.5 bits (52), Expect = 7.1
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 39 IKPSLPPVAPGNTGPAPLL 57
++ SL A + AP L
Sbjct: 25 LQASLKLYADDS---APAL 40
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 29.2 bits (65), Expect = 0.088
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 4 SNEAVHLQQRLRSLSTELVTLRNKLHVQAPPTAPP 38
+ E LQ+++ LS EL TLRN Q P
Sbjct: 49 TAENERLQKKVEQLSRELSTLRNLF-KQLPEPLLA 82
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.137.5.1
Length = 90
Score = 29.2 bits (65), Expect = 0.11
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 9 HLQQRLRSLSTELVTLRNK 27
+Q+ L++L++EL R++
Sbjct: 30 RVQKHLKALTSELANARDE 48
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 27.6 bits (61), Expect = 0.28
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 4 SNEAVHLQQRLRSLSTELVTLRNKLHVQAP 33
+ E LQ+++ LS EL TLRN Q P
Sbjct: 49 TAENERLQKKVEQLSRELSTLRNLF-KQLP 77
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.8 bits (61), Expect = 0.54
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 27 KLHVQAPPTAPPIKPSLPPVAPGNTGPAPLL------YKPIPQ 63
+L+V A P A + P+ ++ + P P+
Sbjct: 109 RLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPK 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.78
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 29 HVQAPPTAPPIKPSLPPVAPGNTGPAPLL 57
+ P T+ P + P+P+L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPML 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.3
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 8 VH-LQQRLRSLSTELVTLRNKL--HVQAPPTAPPIKPSLPPV 46
+ + L+ L + H P T P +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
>1khv_A RNA-directed RNA polymerase; RNA-dependent RNA polymerase,
transferase; 2.50A {Rabbit hemorrhagic disease virus}
SCOP: e.8.1.4 PDB: 1khw_A
Length = 516
Score = 26.3 bits (57), Expect = 2.2
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 34 PTAPPIKPSLPPVAPGNTGPAPL 56
T P +P PA L
Sbjct: 31 GTRYAKVPGVPDEYKTGYRPANL 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 25.7 bits (56), Expect = 3.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 32 APPTAPPIKPSLPPVAPGNTGPAPLLYK 59
PP+ + L + P GP PLLY+
Sbjct: 609 PPPSWDQMWKCLIRLKPTLHGPTPLLYR 636
>4feh_A Oxidoreductase DPRE1; alpha+beta,
decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A
{Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A*
4fdp_A* 4ff6_A*
Length = 481
Score = 25.1 bits (54), Expect = 5.9
Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 49 GNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAVGGGGSTPHSPGDA 99
G T P+ P + V S A G G S GD
Sbjct: 37 GRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLG----RSYGDN 83
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 24.8 bits (54), Expect = 6.8
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 27 KLHVQAPPTAPPIKPSLPPVAPG 49
++ + I PP G
Sbjct: 169 QITITQGLAVSTISSFFPPGYQG 191
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins
anion, structural genomics, PSI, protein structure
initiative; HET: KEG; 2.10A {Homo sapiens}
Length = 195
Score = 24.3 bits (53), Expect = 8.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 33 PPTAPPIKPSLPPVAPGNTGP 53
P +PP K LP V + G
Sbjct: 8 PIPSPPAKYLLPEVTVLDYGK 28
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR
genomics, joint center for structural genomics, JCSG;
HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Length = 174
Score = 24.1 bits (52), Expect = 9.2
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 33 PPTAPP--------IKPSLPPVAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVP 84
P + PP I+ +LP A L++ + H + N A ++S P
Sbjct: 78 PDSTPPEAQLILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHL 137
Query: 85 AVGG 88
A GG
Sbjct: 138 AQGG 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.388
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,579,875
Number of extensions: 83722
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 32
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.9 bits)