RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6223
         (107 letters)



>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 30.9 bits (69), Expect = 0.018
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 50  NTGPAPLLYKPIP-----QHQKAANIVVADVLSEK-CPPVPAVGGGGSTPHSPGDAGSKP 103
           +     LL+   P     +HQ     +  D + E     V  + GGG+  H   +     
Sbjct: 27  DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTI 86

Query: 104 VTP 106
           ++ 
Sbjct: 87  ISK 89


>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 30.5 bits (68), Expect = 0.023
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 49  GNTGPAPLLYKP-----IPQHQKAANIVVADVLSEK-CPPVPAVGGGGSTPHSPGDAGSK 102
             T     L++      I + Q          + E          GGG+  H  G+    
Sbjct: 28  PATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFT 87

Query: 103 PVTP 106
            +  
Sbjct: 88  FMAG 91


>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 256

 Score = 29.7 bits (66), Expect = 0.046
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 64 HQKAANIVVADVLSEK-CPPVPAVGGGGSTPHSPGD 98
           Q A   V  D + +          GGG+  H  GD
Sbjct: 50 FQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGD 85


>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 90

 Score = 27.9 bits (62), Expect = 0.096
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 9  HLQQRLRSLSTELVTLRNK 27
           +Q+ L++L++EL   R++
Sbjct: 30 RVQKHLKALTSELANARDE 48


>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 65

 Score = 25.7 bits (57), Expect = 0.44
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 10 LQQRLRSLSTELVTLRNKLHVQAPPTAP 37
           +  L  L TEL+  R        P  P
Sbjct: 16 REAELDDLKTELLNARAVQAAGGAPENP 43


>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
           [TaxId: 1931]}
          Length = 258

 Score = 24.7 bits (53), Expect = 2.5
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 23  TLRNKLHVQAPPTAPPIKPSLPPVAPGNTGPAP 55
           T +NK ++ +   A        P    +T P  
Sbjct: 221 TCQNKSNIASVWFAASGNAGCMPTMHKDTNPKA 253


>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 265

 Score = 24.7 bits (53), Expect = 2.7
 Identities = 6/69 (8%), Positives = 15/69 (21%), Gaps = 8/69 (11%)

Query: 46  VAPGNTGPAPLLYKP-----IPQHQKAANIVVAD---VLSEKCPPVPAVGGGGSTPHSPG 97
           +    + P    +       +         + A    +   +   +    GG +     G
Sbjct: 30  IGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSG 89

Query: 98  DAGSKPVTP 106
                 V  
Sbjct: 90  ILNLSLVLK 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,979
Number of extensions: 15591
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)