RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6224
         (82 letters)



>2fxa_A Protease production regulatory protein HPR; protease porduction,
           regulation, STR genomics, PSI, protein structure
           initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis}
           SCOP: a.4.5.28
          Length = 207

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 44  VRSRPDERNQFIVLTTFGEHTLHHLFPTIDHCF 76
            +   D+RN ++ LT  G      L    D   
Sbjct: 95  SKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTR 127


>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural
           genomic protein structure initiative; 2.10A {Pseudomonas
           aeruginosa} SCOP: a.4.5.28
          Length = 142

 Score = 25.8 bits (57), Expect = 1.3
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 44  VRSRPDERNQFIVLTTFGEHTLHHLFPTIDHCFLHI 79
            ++  D+R  ++ LT  G+     +   ++  +  I
Sbjct: 83  WKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRI 118


>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix
           binding motif, structural genomics, PSI-2; 2.30A
           {Geobacillus stearothermophilus}
          Length = 150

 Score = 25.5 bits (56), Expect = 1.7
 Identities = 8/33 (24%), Positives = 10/33 (30%)

Query: 44  VRSRPDERNQFIVLTTFGEHTLHHLFPTIDHCF 76
           VR   D R   I L   GE  +  +        
Sbjct: 89  VRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDL 121


>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription
           factor, structur genomics, oxford protein production
           facility; 2.10A {Neisseria meningitidis serogroup B}
          Length = 145

 Score = 24.7 bits (54), Expect = 3.0
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 4/39 (10%)

Query: 32  EDRDWGINQIDAVRSRPDERNQFIVLTTFGEHTLHHLFP 70
             +      I+      D R + + LT  G+     L  
Sbjct: 70  AGQGL----IEWQEGEQDRRKRLLSLTETGKAYAAPLTE 104


>1dz3_A Stage 0 sporulation protein A; response regulator, domain
          swapping; 1.65A {Bacillus stearothermophilus} SCOP:
          c.23.1.1 PDB: 1qmp_A*
          Length = 130

 Score = 24.4 bits (54), Expect = 3.7
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 30 PREDRDWGINQIDAVRSRPDERNQFIVLTTFGE 62
          P  D   G+  ++ +R+  + +   I+LT FG+
Sbjct: 59 PHLD---GLAVLERIRAGFEHQPNVIMLTAFGQ 88


>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
           neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
           coli}
          Length = 680

 Score = 24.1 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 56  VLTTFGE--HTLHHLFPTIDH 74
           V+T F E  HTLH LF    +
Sbjct: 464 VITLFHEFGHTLHGLFARQRY 484


>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
           oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
           SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
          Length = 825

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 6/49 (12%), Positives = 13/49 (26%)

Query: 8   LFAVIGVNAAHHHPDIFHQGDTPREDRDWGINQIDAVRSRPDERNQFIV 56
           +   IG N      + F     P         + +   +    + + I 
Sbjct: 227 VIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIF 275


>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
           iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
           acetylenicus}
          Length = 727

 Score = 23.8 bits (52), Expect = 8.8
 Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 7/33 (21%)

Query: 1   MMGWGSF-------LFAVIGVNAAHHHPDIFHQ 26
             G  SF           IG N ++H+      
Sbjct: 149 THGSYSFASFADSNCLLFIGKNLSNHNWVSQFN 181


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.143    0.491 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,439,286
Number of extensions: 71329
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 16
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)