RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6224
         (82 letters)



>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor,
           MarR {Escherichia coli [TaxId: 562]}
          Length = 138

 Score = 24.2 bits (52), Expect = 1.9
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 29  TPREDRDWGINQIDAVRSRPDERNQFIVLTTFGEHTLHHLFPTIDHCF 76
           T   DR      ++ + +  D+R   + LTT G          +    
Sbjct: 66  TRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDL 113


>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4,
           N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
          Length = 460

 Score = 23.8 bits (51), Expect = 3.2
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 3   GWGSFLFAVIGVNAAHHHPDIFHQGDTPREDRDWGINQID 42
            WG+  +A      A  +  +       +   D+ + QI+
Sbjct: 312 TWGALRYAANTAFVALVYAKVIDDPVRKQRYHDFAVRQIN 351


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.491 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 348,682
Number of extensions: 13432
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 8
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)