BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy623
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ S+ +AL +E K LQEEPVEGFRV LV++ +L+ WEVAIFGPP+T Y+GGYFK
Sbjct: 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA 59
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ S+ +AL +E K LQEEPVEGFRV LV++ +L+ WEVAIFGPP+T Y+GGYFK
Sbjct: 2 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA 56
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVV 63
VP S L L + L + PVEGF L++D++L+ WEV I GPPDTLY+GG FK +
Sbjct: 15 VPRGSLL--LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 72
Query: 64 WYK 66
+ K
Sbjct: 73 FPK 75
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
L + ++ PV+GF LV+D+++++WEV + GPPDTLY+GG+FK +
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAIL 57
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E LQ +P R V DD LF W+ I GPPD+ YQGG F + V
Sbjct: 6 SMALKRIQKELSDLQRDPPAHCRAGPVGDD-LFHWQATIMGPPDSAYQGGVFFLTV 60
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F +
Sbjct: 4 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 60
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F +
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 57
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F +
Sbjct: 5 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 61
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F +
Sbjct: 7 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 63
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E LQ +P V DD LF W+ I GPPD+ YQGG F + V
Sbjct: 18 SMALKRIQKELSDLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVFFLTV 72
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E LQ +P V DD LF W+ I GPPD+ YQGG F + V
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVFFLTV 56
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E LQ +P V DD LF W+ I GPPD+ YQGG F + V
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVFFLTV 60
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
T+ + R L ++K LQE+P G +DN+ WE IFGP +T ++ G FK+ +
Sbjct: 5 TTPSRRRLMRDFKKLQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 60
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
T+ + R L ++K LQE+P G +DN+ WE IFGP +T ++ G FK+ +
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 57
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E + LQ +P V DD LF W+ I GP D+ YQGG F + +
Sbjct: 5 SMALKRIQKELQDLQRDPPAQCSAGPVGDD-LFHWQATIMGPSDSPYQGGVFFLTI 59
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
++ A + L ++K LQ++P G D+N+ W IFGP DT + GG FK+ +
Sbjct: 2 STPARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P R V DD +F W+ I GP D+ YQGG F + +
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 54
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E + L +P V DD LF W+ I GPP++ YQGG F + +
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPESPYQGGVFFLTI 57
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
++ A R L ++K LQE+P G +++N+ +W IFGP T ++ G FK+ +
Sbjct: 2 STPARRRLMRDFKRLQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVI 57
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
SAL+ ++ E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 3 SALKRINKELSDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 56
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ ++ E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 64
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
A+R + E + +Q++P V DD +F W I GP D+ YQGG F
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDD-IFHWTATITGPDDSPYQGGLF 53
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 9 NSMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 64
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 5 SMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 59
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 72
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 3 SMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 57
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 72
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 2 SMALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 56
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ ++ E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 54
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 163
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ ++ E L ++P V DD LF W+ I GP D+ Y GG F + +
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDD-LFHWQATIMGPADSPYAGGVFFLSI 54
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
AL+ ++ E L +P V DD +F W+ I GP D+ YQGG F
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 49
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ ++ E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 62
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 56
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 56
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 54
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 56
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
AL+ ++ E L ++P V DD +F W+ I GP D+ Y GG F
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDD-MFHWQATIMGPEDSPYSGGVF 70
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
AL+ + E L +P V DD +F W+ I GP D+ YQGG F
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
E2 E1
Length = 194
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 36 DNLFEWEVAIFGPPDTLYQGGYF 58
DN++EW I GPP ++Y+GG F
Sbjct: 75 DNIYEWRSTILGPPGSVYEGGVF 97
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
AL+ + E L +P V DD +F W+ GP D+ YQGG F + +
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATAMGPNDSPYQGGVFFLTI 56
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
S+ + ++ E L+ +P V DD L+ W+ +I GP D+ Y GG F
Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGDD-LYHWQASIMGPADSPYAGGVF 51
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S L L E K ++ E V+ + D N FEW I GP T Y+GG+F + +
Sbjct: 22 SKELLRLQKELKDIENENVQEIDAH-IKDSNFFEWVGFIKGPEGTPYEGGHFTLAI 76
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
A + + E L +P V DD +F W+ I GP D+ YQGG F + +
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTI 53
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 36 DNLFEWEVAIFGPPDTLYQGGYF 58
DN++EW I GPP ++Y+GG F
Sbjct: 30 DNIYEWRSTILGPPGSVYEGGVF 52
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
++ A R L ++K ++E+ G + DN+ W I GP DT Y+ G F++ +
Sbjct: 2 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLL 57
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66
+R + E +L +P +G +V N+++L + +V I GP T Y GG F++ ++ K
Sbjct: 15 IRLVYKEVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGK 70
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ +A + L E + L ++ G +++N+F W+ I GPPDT Y G F
Sbjct: 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNA 56
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 9 ALRALSMEYKSL---QEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
A++ + E+K + +E +V LV D+N E I GPPDT Y+GG +++ +
Sbjct: 7 AVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 62
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 9 ALRALSMEYKSL---QEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
A++ + E+K + +E +V LV D+N E I GPPDT Y+GG +++ +
Sbjct: 6 AVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 61
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 9 ALRALSMEYKSL---QEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
A++ + E+K + +E +V LV D+N E I GPPDT Y+GG +++ +
Sbjct: 9 AVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 64
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating
Enzyme, Ubc1
Length = 215
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
SS + + E ++++++P ++ V++ ++ + GPP T Y+GG F V
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 54
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S + + E ++++++P ++ V++ ++ + GPP T Y+GG F V +
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI 55
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 9 ALRALSMEYKSL---QEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
A++ + E+K + +E +V LV D+N E I GPPDT Y+GG +++
Sbjct: 58 AVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQL 111
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 9 ALRALSMEYKSL---QEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
A++ + E+K + +E +V LV D+N E I GPPDT Y+GG +++
Sbjct: 22 AVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQL 75
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 3 QVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
+ PT++ R L +Y ++++PV + + N+ EW + GP T Y+GGY+
Sbjct: 10 RAPTTATQR-LKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYY 63
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+
Sbjct: 11 RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKL 59
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+
Sbjct: 8 RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKL 56
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+
Sbjct: 9 RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKL 57
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+
Sbjct: 6 RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKL 54
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+
Sbjct: 4 RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKL 52
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
Length = 159
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 10 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+ +++
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKV 60
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 9 ALRALSMEYKSLQEEPVEGF-RVKLVNDD---NLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
AL L+ E K+ +++ GF V N D NL WE AI G T ++GG FK+ +++
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 36 DNLFEWEVAIFGPPDTLYQGGYFKVCV 62
DNLF+W + GP DT+Y+ +K+ +
Sbjct: 36 DNLFKWVATLDGPKDTVYESLKYKLTL 62
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
L ++ L+E +G K V++D + EWEV I G ++++QG F++ +
Sbjct: 28 LHRDFCDLKENNYKGITAKPVSED-MMEWEVEIEGLQNSVWQGLVFQLTI 76
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
MA +P + + E + L +PV G + +DDNL ++V I GP + Y+ G F++
Sbjct: 1 MASLP-----KRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFEL 54
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
MA +P + + E + L +PV G + +DDNL ++V I GP + Y+ G F++
Sbjct: 1 MASLP-----KRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFEL 54
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+S + + E + L +PV G + +DDNL ++V I GP + Y+ G F++
Sbjct: 3 AASLPKRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFEL 56
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
MA +P + + E + L +PV G + +DDNL ++V I GP + Y+ G F++
Sbjct: 1 MASLP-----KRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFEL 54
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+++ +L +WE I GP DT Y+ F++ +
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILI 71
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+++ +L +WE I GP DT Y+ F++ +
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILI 71
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+++ +L +WE I GP DT Y+ F++ +
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILI 71
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R ++ E ++L EP G V +N + + I GP T Y+GG +K+
Sbjct: 4 RRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKL 52
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
R ++ E ++L EP G V +N + + I GP T Y+GG +K+
Sbjct: 4 RRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKL 52
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
Length = 136
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDN-LFEWEVAIFGPPDTLYQGGYFKV 60
+S + L E +LQ +P G + + N + +W V + G P TLY+G F++
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQL 75
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 26 EGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVV 63
G ++V D + W I GP T Y+GG+F + +V
Sbjct: 63 HGVSAQIVGGD-IHRWRGFIAGPLGTPYEGGHFTLDIV 99
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 37 NLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
+L W+V I G P T ++GG +K+ + +
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAF 70
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 31 KLVNDDNLFEWEVAIFGPPDTLYQGGYFK 59
++V D W + PP+TLY GG+ K
Sbjct: 121 EMVKSDPDRYWGTFQYDPPETLYGGGFLK 149
>pdb|3LQM|A Chain A, Structure Of The Il-10r2 Common Chain
pdb|3LQM|B Chain B, Structure Of The Il-10r2 Common Chain
Length = 201
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 24 PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYKCSQ 69
P E R+ VN N+ +WE F + Y + KC Q
Sbjct: 4 PPENVRMNSVNFKNILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQ 49
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEG--FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
M++V + R L + + EG F ++ +D L W IFG P T+++ +
Sbjct: 19 MSEVIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIY 78
Query: 59 KVCV 62
+ +
Sbjct: 79 SLTI 82
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 30 VKLVNDDNLFEWEVAIFGPPDTLYQ 54
V V D+N+ +WEV+I G +T Y+
Sbjct: 34 VPYVPDENILDWEVSIEGMVETPYK 58
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 12 ALSMEYKSLQEEPVEGFRVKLVNDDN 37
A S + +L+ +P+ GF V LV D+N
Sbjct: 40 AASEDVAALESQPLLGFTVTLVKDEN 65
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 25 VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVV 63
+ G+ ++L N+ + +++V GP T Y+GG +KV V
Sbjct: 16 MAGYDLEL-NNGSTQDFDVMFHGPNGTAYEGGIWKVHVT 53
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+A R L E + +++ ++ FR V++ NL W+ + P + Y G F++
Sbjct: 4 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRI 55
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+A R L E + +++ ++ FR V++ NL W+ + P + Y G F++
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRI 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,270,341
Number of Sequences: 62578
Number of extensions: 75794
Number of successful extensions: 199
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 99
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)