Query psy623
Match_columns 69
No_of_seqs 142 out of 1065
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 21:06:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ucz_A UBC7, ubiquitin conjuga 99.9 1E-21 3.5E-26 115.8 9.5 61 6-66 2-62 (165)
2 2e2c_A Ubiquitin conjugating e 99.9 6.4E-22 2.2E-26 115.8 8.3 65 1-66 1-66 (156)
3 2fo3_A Ubiquitin-conjugating e 99.9 6.1E-22 2.1E-26 112.4 7.8 59 7-66 5-63 (125)
4 1zdn_A Ubiquitin-conjugating e 99.9 1.6E-21 5.4E-26 114.4 9.6 62 4-66 9-70 (158)
5 2h2y_A Ubiquitin-conjugating e 99.9 1.6E-21 5.6E-26 112.1 9.2 60 6-66 18-77 (136)
6 3rz3_A Ubiquitin-conjugating e 99.9 1.8E-21 6.2E-26 116.4 9.3 62 5-66 4-65 (183)
7 1yrv_A Ubiquitin-conjugating l 99.9 1.7E-21 5.8E-26 115.5 8.4 62 4-66 19-80 (169)
8 1ayz_A UBC2, ubiquitin-conjuga 99.9 2E-21 6.8E-26 115.1 7.8 59 7-66 3-61 (169)
9 3h8k_A Ubiquitin-conjugating e 99.9 4.4E-21 1.5E-25 112.9 9.2 60 7-66 2-61 (164)
10 2awf_A Ubiquitin-conjugating e 99.9 3.2E-21 1.1E-25 114.5 8.6 62 5-66 14-75 (172)
11 4gpr_A Ubiquitin-conjugating e 99.9 4.9E-21 1.7E-25 111.6 9.1 59 7-66 3-61 (151)
12 2aak_A UBC1, ubiquitin conjuga 99.9 3.1E-21 1E-25 112.5 7.9 60 6-66 2-61 (152)
13 2c2v_B Ubiquitin-conjugating e 99.9 2E-21 6.8E-26 113.6 7.1 59 7-66 4-62 (154)
14 1yh2_A HSPC150 protein similar 99.8 7.2E-21 2.4E-25 112.6 9.2 60 6-66 2-61 (169)
15 2f4w_A Ubiquitin-conjugating e 99.8 3.3E-21 1.1E-25 115.7 7.4 60 6-66 12-71 (187)
16 2c4o_A Ubiquitin-conjugating e 99.8 1.2E-20 4E-25 111.4 9.2 60 6-66 17-76 (165)
17 2ayv_A Ubiquitin-conjugating e 99.8 9.9E-21 3.4E-25 111.9 8.8 59 7-66 20-78 (166)
18 1z2u_A Ubiquitin-conjugating e 99.8 6.5E-21 2.2E-25 110.9 7.8 59 7-66 3-61 (150)
19 3rcz_B SUMO-conjugating enzyme 99.8 4.3E-21 1.5E-25 113.1 6.9 62 5-66 7-72 (163)
20 2pwq_A Ubiquitin conjugating e 99.8 1.2E-20 4.2E-25 115.3 9.1 61 5-66 20-80 (216)
21 2a4d_A Ubiquitin-conjugating e 99.8 2.5E-20 8.6E-25 109.7 9.7 62 5-66 22-86 (160)
22 2bep_A Ubiquitin-conjugating e 99.8 1.8E-20 6.1E-25 110.0 8.7 61 5-66 5-68 (159)
23 2grr_A Ubiquitin-conjugating e 99.8 1.2E-20 4.2E-25 110.9 7.6 63 4-66 3-69 (161)
24 2gjd_A Ubiquitin-conjugating e 99.8 1.2E-20 4.1E-25 110.6 7.2 60 7-66 3-66 (157)
25 2a7l_A Hypothetical ubiquitin- 99.8 4E-21 1.4E-25 110.6 4.9 58 9-66 23-81 (136)
26 3bzh_A Ubiquitin-conjugating e 99.8 3.3E-20 1.1E-24 111.9 8.9 59 7-66 47-105 (194)
27 1i7k_A Ubiquitin-conjugating e 99.8 1E-20 3.6E-25 112.9 6.4 60 6-66 28-87 (179)
28 1jat_B Ubiquitin-conjugating e 99.8 5.8E-20 2E-24 105.7 9.2 59 8-66 6-67 (138)
29 1fxt_A Ubiquitin-conjugating e 99.8 1.8E-20 6E-25 109.0 7.0 58 9-66 2-59 (149)
30 2r0j_A Ubiquitin carrier prote 99.8 3.4E-20 1.2E-24 107.8 7.4 56 10-66 3-58 (149)
31 1jat_A Ubiquitin-conjugating e 99.8 1.4E-20 4.8E-25 110.0 5.6 58 8-66 5-62 (155)
32 2q0v_A Ubiquitin-conjugating e 99.8 9.9E-20 3.4E-24 106.7 9.2 61 6-66 19-82 (156)
33 2f4z_A Tgtwinscan_2721 - E2 do 99.8 3.3E-20 1.1E-24 111.8 7.0 59 7-66 31-102 (193)
34 3k9o_A Ubiquitin-conjugating e 99.8 4.7E-20 1.6E-24 111.6 7.3 61 5-66 2-65 (201)
35 3fn1_B NEDD8-conjugating enzym 99.8 1.2E-19 4E-24 107.1 8.4 61 5-66 11-71 (167)
36 2y9m_A Ubiquitin-conjugating e 99.8 1.7E-19 5.7E-24 107.0 8.2 63 4-66 2-75 (172)
37 3e46_A Ubiquitin-conjugating e 99.8 2.3E-19 7.7E-24 111.9 8.9 61 5-66 54-117 (253)
38 2hlw_A Ubiquitin-conjugating e 99.8 2E-19 7E-24 106.6 6.4 60 7-66 34-96 (170)
39 1y8x_A Ubiquitin-conjugating e 99.8 8.4E-19 2.9E-23 103.0 7.8 58 6-66 4-61 (160)
40 1wzv_A Ubiquitin-conjugating e 99.8 5.1E-19 1.8E-23 103.3 6.5 58 8-66 4-61 (155)
41 4ds2_A Ubiquitin-conjugating e 99.8 1.1E-19 3.8E-24 107.3 3.5 62 4-66 4-79 (167)
42 4ddg_A Ubiquitin-conjugating e 99.8 9.4E-19 3.2E-23 114.5 8.1 59 7-66 2-60 (399)
43 2nvu_C NEDD8-conjugating enzym 99.8 1.1E-18 3.7E-23 104.3 7.1 59 5-66 23-81 (180)
44 1tte_A Ubiquitin-conjugating e 99.8 9.4E-20 3.2E-24 111.4 1.7 58 9-66 3-60 (215)
45 3ceg_A Baculoviral IAP repeat- 99.7 7.7E-18 2.6E-22 107.8 8.5 62 4-66 72-137 (323)
46 1c4z_D UBCH7, ubiquitin conjug 99.7 1.3E-18 4.3E-23 101.6 4.1 57 9-66 3-59 (154)
47 2onu_A Ubiquitin-conjugating e 99.7 7.5E-19 2.6E-23 102.5 2.9 54 9-66 3-56 (152)
48 1yf9_A Ubiquitin carrier prote 99.7 3.6E-18 1.2E-22 101.3 5.8 54 8-66 12-65 (171)
49 1zuo_A Hypothetical protein LO 99.7 2.4E-18 8.3E-23 103.2 3.5 62 4-66 23-99 (186)
50 2z5d_A Ubiquitin-conjugating e 99.7 1.1E-17 3.8E-22 99.8 6.2 54 8-66 25-78 (179)
51 3o2u_A NEDD8-conjugating enzym 99.7 9.9E-17 3.4E-21 96.4 7.6 60 4-66 25-90 (190)
52 2z6o_A UFM1-conjugating enzyme 99.4 1.2E-13 4.2E-18 81.5 1.1 52 8-66 32-93 (172)
53 3kpa_A Probable ubiquitin fold 98.1 5.1E-07 1.8E-11 52.6 -0.0 52 8-66 34-95 (168)
54 3r3q_A Suppressor protein STP2 95.4 0.031 1.1E-06 32.6 4.6 54 11-66 31-91 (162)
55 3obq_A Tumor susceptibility ge 77.7 2.5 8.4E-05 24.1 3.1 25 36-64 51-75 (146)
56 3u3c_B Paxillin LD2 peptide; 4 59.6 8.1 0.00028 15.2 2.3 20 8-27 5-24 (26)
57 2nqc_A Filamin-C; immunoglobul 55.2 25 0.00085 19.5 5.4 28 39-66 76-119 (138)
58 2rp4_A Transcription factor P5 52.1 9 0.00031 19.4 1.8 23 37-66 8-30 (76)
59 2rf4_B DNA-directed RNA polyme 49.9 8.9 0.0003 20.0 1.6 13 8-20 62-74 (87)
60 3cnk_A Filamin-A; FLNA24, X-RA 46.0 28 0.00094 17.3 5.3 13 52-64 62-74 (89)
61 1cq3_A Viral chemokine inhibit 45.4 5.2 0.00018 24.2 0.3 25 45-69 64-90 (233)
62 2k6w_A Putative uncharacterize 44.5 33 0.0011 18.6 3.5 26 41-66 82-107 (120)
63 3g9r_A Fusion complex of HIV-1 43.6 21 0.0007 15.9 2.1 15 7-21 27-41 (42)
64 2dmb_A Filamin-B; beta-sandwic 43.5 38 0.0013 18.2 5.3 13 52-64 75-87 (124)
65 3rco_A Tudor domain-containing 42.6 12 0.00042 19.5 1.5 20 8-27 29-48 (89)
66 1v05_A Filamin C; actin-bindin 39.9 37 0.0013 17.1 5.0 13 52-64 69-81 (96)
67 3sjd_D Golgi to ER traffic pro 37.8 31 0.0011 15.7 2.3 19 1-19 10-28 (46)
68 3cxj_A Uncharacterized protein 37.4 61 0.0021 18.8 5.6 43 15-67 6-48 (165)
69 2dj4_A Filamin-B; beta-sandwic 36.9 46 0.0016 17.2 5.8 13 52-64 75-87 (108)
70 2bsj_A Chaperone protein SYCT; 36.5 30 0.001 19.0 2.4 15 48-62 21-35 (133)
71 3s93_A Tudor domain-containing 34.3 23 0.00078 18.8 1.7 20 8-27 27-46 (102)
72 2dlg_A Filamin-B; beta-sandwic 33.2 54 0.0019 17.0 5.1 13 52-64 63-75 (102)
73 1x9l_A CUI-DR1885; copper bind 32.4 33 0.0011 19.3 2.3 27 40-66 106-132 (149)
74 3t63_M 3,4-PCD, protocatechuat 28.7 12 0.00042 22.9 0.1 18 38-55 220-237 (238)
75 3mxz_A Tubulin-specific chaper 28.5 48 0.0016 18.0 2.4 14 8-21 15-28 (116)
76 4dac_A Computationally designe 28.0 37 0.0013 13.5 2.3 15 8-22 8-22 (28)
77 1qsd_A Protein (beta-tubulin b 27.7 51 0.0017 17.6 2.4 15 7-21 10-24 (106)
78 1h7c_A Tubulin-specific chaper 26.4 55 0.0019 17.4 2.4 14 8-21 14-27 (108)
79 2cu9_A Spcia1, histone chapero 25.3 1E+02 0.0036 17.8 5.9 29 39-67 38-79 (161)
80 1v85_A Similar to ring finger 24.3 78 0.0027 15.9 3.1 20 7-26 71-90 (91)
81 2q8o_A GITR ligand; TNF, dimer 24.0 12 0.00039 21.0 -0.6 14 48-61 89-102 (136)
82 2eec_A Filamin-B; beta-sandwic 23.2 96 0.0033 16.6 5.9 14 52-65 81-94 (125)
83 3rgh_A Filamin-A; cell adhesio 23.0 86 0.0029 15.9 5.3 13 52-64 71-83 (100)
84 1grj_A GREA protein; transcrip 22.3 61 0.0021 18.2 2.2 18 5-22 6-23 (158)
85 2p4v_A Transcription elongatio 22.2 90 0.0031 17.5 2.9 17 5-21 6-22 (158)
86 2dib_A Filamin-B; beta-sandwic 21.5 54 0.0018 17.4 1.8 13 52-64 89-101 (128)
87 4b7l_A Filamin-B; structural p 21.5 1.6E+02 0.0056 18.6 5.8 14 51-64 320-333 (347)
88 1whv_A Poly(A)-specific ribonu 21.2 73 0.0025 17.0 2.2 21 45-67 6-26 (100)
89 2lw9_A Unconventionnal myosin- 21.0 76 0.0026 14.7 2.0 14 9-22 7-20 (51)
90 3iyo_A Capsid protein; amino a 20.7 66 0.0023 22.5 2.4 16 49-64 289-304 (660)
91 2nwt_A UPF0165 protein AF_2212 20.7 24 0.00081 17.6 0.2 9 52-60 8-16 (69)
92 2eam_A Putative 47 kDa protein 20.7 79 0.0027 15.4 2.2 19 7-25 60-78 (80)
93 1kmt_A RHO GDP-dissociation in 20.5 72 0.0025 17.9 2.2 11 54-64 43-53 (141)
94 3nbm_A PTS system, lactose-spe 20.1 1.1E+02 0.0037 16.0 3.0 42 7-50 20-63 (108)
No 1
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.87 E-value=1e-21 Score=115.78 Aligned_cols=61 Identities=30% Similarity=0.541 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
++.+.+||++|+++|+++++++|++.+.+++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~ 62 (165)
T 2ucz_A 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62 (165)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCc
Confidence 3578899999999999999999999955568999999999999999999999999999974
No 2
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.87 E-value=6.4e-22 Score=115.83 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=59.2
Q ss_pred CCCCC-chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 1 MAQVP-TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 1 m~~~~-~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
|++++ ++.+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 1 m~~~~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 66 (156)
T 2e2c_A 1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAF-PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66 (156)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHHCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCccEEEEEEECCCCCCcCCcEEEEEEECCC
Confidence 67765 45688999999999999999999998 7788999999999999999999999999999974
No 3
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.87 E-value=6.1e-22 Score=112.43 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|++++++++++++++. ++++|+++|+++|.||++|||+||.|+++|.||.
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~ 63 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPD 63 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEE-ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-eCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCC
Confidence 4577999999999999999999999 7889999999999999999999999999999974
No 4
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.87 E-value=1.6e-21 Score=114.39 Aligned_cols=62 Identities=29% Similarity=0.507 Sum_probs=57.9
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.++..+.+||++|+++|+++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 9 ~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 70 (158)
T 1zdn_A 9 NLPPHIIRLVYKEVTTLTADPPDGIKVF-PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGK 70 (158)
T ss_dssp CSCHHHHHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCChhheeEEEECCCCCCccCcEEEEEEEcCC
Confidence 4567888999999999999999999999 7889999999999999999999999999999974
No 5
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.86 E-value=1.6e-21 Score=112.08 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
++.+.+||++|++++++++++++.+. ++++|+++|+++|.||++|||+||.|+++|.||.
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~-~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~ 77 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPD 77 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEE-ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEE-eccccccccEEEEECCCCCceeCCEEEEEEEeCC
Confidence 34688999999999999999999998 7889999999999999999999999999999974
No 6
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.86 E-value=1.8e-21 Score=116.44 Aligned_cols=62 Identities=56% Similarity=1.032 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+++.+.+||++|+++|+++++++|++.+++++|+++|+++|.||++|||+||+|+++|.||+
T Consensus 4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~ 65 (183)
T 3rz3_A 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 65 (183)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCC
Confidence 34578899999999999999999999877888999999999999999999999999999974
No 7
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.86 E-value=1.7e-21 Score=115.45 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=57.4
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+|++.+.+||+||+++|+++++++|.+. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 19 ~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 80 (169)
T 1yrv_A 19 SMHGRAYLLLHRDFCDLKENNYKGITAK-PVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTS 80 (169)
T ss_dssp GGGCHHHHHHHHHHHHHHHHCCTTEEEE-ECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCEEEE-EcCCccccceeEEECCCCCCccceEEEEEEECCc
Confidence 4556788999999999999999999998 7788999999999999999999999999999974
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.85 E-value=2e-21 Score=115.13 Aligned_cols=59 Identities=29% Similarity=0.581 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++|+++++++|.+. +.++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~ 61 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSAS-PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-ecCCccccceEEEECCCCCCcCCCEEEEEEECcc
Confidence 4678999999999999999999999 7788999999999999999999999999999974
No 9
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.85 E-value=4.4e-21 Score=112.92 Aligned_cols=60 Identities=38% Similarity=0.675 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++++++++++|++.+.+++|+++|+++|.||++|||+||+|+|+|.||+
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~ 61 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 61 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCC
Confidence 357899999999999999999999955566999999999999999999999999999974
No 10
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.85 E-value=3.2e-21 Score=114.48 Aligned_cols=62 Identities=42% Similarity=0.819 Sum_probs=56.5
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+..+.+||+||+++|+++++++|++.+.+++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~ 75 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCc
Confidence 34578899999999999999999999955668999999999999999999999999999974
No 11
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.85 E-value=4.9e-21 Score=111.58 Aligned_cols=59 Identities=31% Similarity=0.575 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~~i~~~-p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 61 (151)
T 4gpr_A 3 AMAMRRIQKELREIQQDPPCNCSAG-PVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPV 61 (151)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCC
Confidence 4688999999999999999999999 7778999999999999999999999999999974
No 12
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.85 E-value=3.1e-21 Score=112.50 Aligned_cols=60 Identities=33% Similarity=0.697 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
++.+.+||++|+++++++++++|.+. ++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 61 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSE 61 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEE-eCCCCccEEEEEEeCCCCCCccCCEEEEEEECCC
Confidence 34678999999999999999999998 7788999999999999999999999999999974
No 13
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.85 E-value=2e-21 Score=113.59 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
..+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 4 ~~~~~RL~kEl~~l~~~~~~~i~~~-~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~ 62 (154)
T 2c2v_B 4 AGLPRRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 62 (154)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE-ECCCchheEEEEEECCCCCCcCCCeEEEEEEcCC
Confidence 3566999999999999999999999 7788999999999999999999999999999974
No 14
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.85 E-value=7.2e-21 Score=112.64 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+..+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~ 61 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-eCCCchheEEEEEECCCCCCccCCEEEEEEEeCC
Confidence 35688999999999999999999999 8889999999999999999999999999999974
No 15
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.85 E-value=3.3e-21 Score=115.72 Aligned_cols=60 Identities=25% Similarity=0.562 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
++.+.+||++|+++|+++++++|.+. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~ 71 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAE-PLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEE-EcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCC
Confidence 34688999999999999999999998 7788999999999999999999999999999974
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.84 E-value=1.2e-20 Score=111.44 Aligned_cols=60 Identities=30% Similarity=0.589 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 17 ~~~~~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~ 76 (165)
T 2c4o_A 17 GSMALKRIHKELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 76 (165)
T ss_dssp CHHHHHHHHHHHHHHHSSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCcceeEEEEECCCCCCccCceEEEEEECCC
Confidence 45688999999999999999999999 7788999999999999999999999999999974
No 17
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.84 E-value=9.9e-21 Score=111.86 Aligned_cols=59 Identities=27% Similarity=0.605 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++|+++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 78 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAG-PVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPS 78 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCC
Confidence 4578999999999999999999999 7888999999999999999999999999999974
No 18
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.84 E-value=6.5e-21 Score=110.91 Aligned_cols=59 Identities=31% Similarity=0.636 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
..+.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 61 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-ECCCcceEEEEEEECCCCCCcCCCEEEEEEECCC
Confidence 4578999999999999999999999 7778999999999999999999999999999974
No 19
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.84 E-value=4.3e-21 Score=113.14 Aligned_cols=62 Identities=29% Similarity=0.517 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCC-C---CcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVND-D---NLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~-~---nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+..+.+||+||+++++++++++|++.+.++ | |+++|+++|.||++|||+||+|+|+|.||.
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~ 72 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCC
Confidence 4568999999999999999999999994332 2 899999999999999999999999999974
No 20
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=99.84 E-value=1.2e-20 Score=115.34 Aligned_cols=61 Identities=33% Similarity=0.557 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+.+||++|+++|+++++++|++. +.++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~ 80 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAH-IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPN 80 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEE-EcCCccceeEEEEeCCCCCCccceEEEEEEECCC
Confidence 345788999999999999999999999 7788999999999999999999999999999974
No 21
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.84 E-value=2.5e-20 Score=109.67 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHHhhhCCCCC-EEEEecCCCC--cceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEG-FRVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~-~~~~~~~~~n--l~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
...++.+||+||+++++++++++ +++.+.+++| +++|+++|.||++|||+||+|+|+|.||.
T Consensus 22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~ 86 (160)
T 2a4d_A 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 86 (160)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCC
Confidence 34578899999999999998888 7887446665 99999999999999999999999999974
No 22
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.84 E-value=1.8e-20 Score=109.98 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHhhhC---CCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~---~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
|+..+.+||+||+++|+++ +++++++. +.++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 68 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 68 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-ECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eCCCchheEEEEEECCCCCCccCCEEEEEEeCCC
Confidence 4557889999999999885 57899999 7778999999999999999999999999999974
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.83 E-value=1.2e-20 Score=110.89 Aligned_cols=63 Identities=30% Similarity=0.453 Sum_probs=55.6
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCCEEEEecC----CCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVN----DDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~----~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.|++.+.+||++|+++|+++++++|.+.+.. ++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 69 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCc
Confidence 4556788999999999999999999988432 36899999999999999999999999999974
No 24
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.83 E-value=1.2e-20 Score=110.57 Aligned_cols=60 Identities=30% Similarity=0.446 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCC----CCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~----~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++++++++++|.+.+..+ +|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~ 66 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCC
Confidence 46789999999999999999999984322 4899999999999999999999999999974
No 25
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.83 E-value=4e-21 Score=110.56 Aligned_cols=58 Identities=26% Similarity=0.512 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEE-ecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 9 ALRALSMEYKSLQEEPVEGFRVK-LVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~~~~~~~~~~-~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+||+||+++++++++++|++. .++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 23 ~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 81 (136)
T 2a7l_A 23 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 81 (136)
T ss_dssp SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCC
Confidence 34999999999999999999854 26788999999999999999999999999999974
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.83 E-value=3.3e-20 Score=111.93 Aligned_cols=59 Identities=25% Similarity=0.622 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||++|+++|+++++++|.+. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 105 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cHHHHHHHHHHHHHHhCCCCCceee-cccCccccceEEEeCCCCCCccCCEEEEEEECCC
Confidence 4578999999999999999999999 7889999999999999999999999999999974
No 27
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.83 E-value=1e-20 Score=112.93 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+..+.+||++|+++|+++++++|++. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 87 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEE-EETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEE-EcCCcccccEEEEECCCCCCcCCCEEEEEEECCC
Confidence 45688999999999999999999998 7788999999999999999999999999999974
No 28
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.83 E-value=5.8e-20 Score=105.72 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhC-CCCCEEEEecCCC--CcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEE-PVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~-~~~~~~~~~~~~~--nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+||+||+++++++ +++++++.+.+++ |+++|+++|.||++|||+||+|+|+|.||.
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~ 67 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGP 67 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCC
Confidence 5678999999999998 7889999854433 599999999999999999999999999974
No 29
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.83 E-value=1.8e-20 Score=108.97 Aligned_cols=58 Identities=21% Similarity=0.475 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+||++|+++++++++++|++.+.+++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~ 59 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCT
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCC
Confidence 4589999999999999999999944444999999999999999999999999999974
No 30
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.82 E-value=3.4e-20 Score=107.81 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 10 ~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+||++|+++++++++++|++. ++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 58 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAV-PVPENYRHFNILINGPDGTPYEGGTYKLELFLPE 58 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-ECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCc
Confidence 4899999999999999999999 7778999999999999999999999999999974
No 31
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.82 E-value=1.4e-20 Score=110.04 Aligned_cols=58 Identities=29% Similarity=0.471 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+||++|+++|+++++++|++. ++++|+++|+++|.||++|||+||.|+|+|.||.
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~ 62 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-ECCCchhEEEEEEECCCCCCccCcEEEEEEEcCC
Confidence 456899999999999999999999 7778999999999999999999999999999974
No 32
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.82 E-value=9.9e-20 Score=106.72 Aligned_cols=61 Identities=23% Similarity=0.368 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHhhhC-CCCCEEEEecCCC--CcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEE-PVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~-~~~~~~~~~~~~~--nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
...+.+||++|+++++++ +++++++.+.+++ |+++|+++|.||++|||+||+|+|+|.||.
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 82 (156)
T 2q0v_A 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDD 82 (156)
T ss_dssp CCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCC
Confidence 346889999999999998 7889999854433 699999999999999999999999999974
No 33
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.82 E-value=3.3e-20 Score=111.83 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhhhCCC-------------CCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPV-------------EGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~-------------~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
..+.+||+||+++|+++++ .+|.+. ++++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 102 (193)
T 2f4z_A 31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPP 102 (193)
T ss_dssp -CHHHHHHHHHHHHHHC----------------CEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-EcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCC
Confidence 3577899999999999876 789999 6778999999999999999999999999999974
No 34
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.81 E-value=4.7e-20 Score=111.56 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHhhhC---CCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~---~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
|+..+.+||+||+++++++ ++.+|++. +.++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 65 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 65 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEE-ECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEE-ECCCCccEEEEEEECCCCCCCCCCEEEEEEECCC
Confidence 3345789999999999886 36799999 7788999999999999999999999999999974
No 35
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.81 E-value=1.2e-19 Score=107.14 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
..+.+.+||++|+++|+++++++|++.+.+++|++.|+++| ||++|||+||+|+|+|.||.
T Consensus 11 ~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~ 71 (167)
T 3fn1_B 11 RVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPD 71 (167)
T ss_dssp CCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCT
T ss_pred chhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCC
Confidence 34578899999999999999999999956678999999998 89999999999999999974
No 36
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.80 E-value=1.7e-19 Score=107.04 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHHHHHhhh-C-C------CC---CEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQE-E-P------VE---GFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~-~-~------~~---~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+|+..+.+||++|+++|++ + + +. ++.+.+.+++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~ 75 (172)
T 2y9m_A 2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS 75 (172)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCC
Confidence 3556789999999999988 4 3 33 4566633888999999999999999999999999999974
No 37
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=99.80 E-value=2.3e-19 Score=111.86 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHHhhhC---CCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~---~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
|+..+.+||++||++|+++ ++.+|++. +.++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 117 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPE 117 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-ECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-ECCCcccEEEEEEECCCCCCcCCCEEEEEEECCC
Confidence 4567899999999999886 46799999 7788999999999999999999999999999974
No 38
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=106.61 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhCCCCC-EEEEecCCCC--cceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEG-FRVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~-~~~~~~~~~n--l~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.++.+||++|+++++++++++ +++.+.+++| +++|+++|.||++|||+||+|+|+|.||.
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~ 96 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 96 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCS
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCC
Confidence 357899999999999998888 6777446654 99999999999999999999999999974
No 39
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.78 E-value=8.4e-19 Score=103.01 Aligned_cols=58 Identities=17% Similarity=0.335 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 6 ~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
++.+.+||++|++++ ++++++++..++++|+++|+++| ||++|||+||.|+++|.||.
T Consensus 4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~ 61 (160)
T 1y8x_A 4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQ 61 (160)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCC
Confidence 457889999999999 57789998856788999999988 99999999999999999974
No 40
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.78 E-value=5.1e-19 Score=103.33 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+||++|+++++++++++|.+..++++|+++|+++|. |++|||+||+|+|+|.||.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~ 61 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP 61 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCC
Confidence 367999999999999999999994388899999999999 9999999999999999974
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.77 E-value=1.1e-19 Score=107.31 Aligned_cols=62 Identities=19% Similarity=0.411 Sum_probs=54.9
Q ss_pred CCchHHHHHHHHHHHHhhhCC------------CCCEEEEecCCCCcceEEEEEECCCCCCCC--CcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEP------------VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQ--GGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~------------~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~--gg~f~l~i~fp~ 66 (69)
.|++.+.+||++|++++++++ +.++.+. ++++|+++|+++|.||++|||+ ||.|+|+|.||.
T Consensus 4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~ 79 (167)
T 4ds2_A 4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSD 79 (167)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCT
T ss_pred cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCC
Confidence 344567799999999998876 6788888 8889999999999999999999 999999999974
No 42
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.77 E-value=9.4e-19 Score=114.46 Aligned_cols=59 Identities=29% Similarity=0.599 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+.+||+||++++++++++++++. ++++|+++|+++|.||++|||+||+|+++|.||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 60 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEE-EETTEEEEEEEEEECCTTSSSTTCEEEEEEECCS
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-EcCCcceEEEEEEECCCCCCCCCCEEEEEEECCc
Confidence 4688999999999999999999999 7788999999999999999999999999999975
No 43
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.77 E-value=1.1e-18 Score=104.26 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.++.+.+||++|++++ ++++++++..++++|+++|+++| ||++|||+||+|+|+|.||.
T Consensus 23 ~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~ 81 (180)
T 2nvu_C 23 KASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQ 81 (180)
T ss_dssp SCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCT
T ss_pred CccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCC
Confidence 3457889999999999 57789999856788999999998 99999999999999999974
No 44
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.76 E-value=9.4e-20 Score=111.37 Aligned_cols=58 Identities=21% Similarity=0.475 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+||++|+++++++++++|++.+.+++++++|+++|.||++|||+||+|+|+|.||.
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~ 60 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCc
Confidence 5689999999999999999999943444677999999999999999999999999974
No 45
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=107.82 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=54.7
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCC----EEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEPVEG----FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~~~~----~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.++..+.+||++|+++|+++++++ +.+. ++++|++.|+++|.||++|||+||+|+|+|.||.
T Consensus 72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~-~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~ 137 (323)
T 3ceg_A 72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVR-CDEERLDIMKVLITGPADTPYANGCFEFDVYFPQ 137 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEE-EESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcccceeec-ccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCC
Confidence 456789999999999999887764 4565 6788999999999999999999999999999974
No 46
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.74 E-value=1.3e-18 Score=101.60 Aligned_cols=57 Identities=26% Similarity=0.489 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+||++|++++++++++++.+.+++++|+++|+++|. |++|||+||+|+|+|.||.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~ 59 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPA 59 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCC
Confidence 55899999999999999999876467889999999998 9999999999999999974
No 47
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.74 E-value=7.5e-19 Score=102.50 Aligned_cols=54 Identities=26% Similarity=0.539 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
+.+||+||+++++++ ++++. +.++|+++|+++|.||++|||+||+|+++|.||.
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~ 56 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLE-LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPD 56 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHhcCcC---CCEEE-EccCccceEEEEEECCCCCcccceEEEEEEcCcc
Confidence 458999999999874 67788 6678999999999999999999999999999974
No 48
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.74 E-value=3.6e-18 Score=101.29 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+||++|++++++++. + +. +++|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~--v~--~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~ 65 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-K--VY--PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 65 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-C--EE--ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred cHHHHHHHHHHHHHhCCC-C--CC--CCCCceEEEEEEECCCCCCccCceEEEEEEcCC
Confidence 567999999999998873 3 32 367999999999999999999999999999974
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.72 E-value=2.4e-18 Score=103.19 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHHHHhhhCC---CCCEEEEecCCCCcceEEEEEECC-CCCCCCC-----------cEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEP---VEGFRVKLVNDDNLFEWEVAIFGP-PDTLYQG-----------GYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~---~~~~~~~~~~~~nl~~w~~~i~GP-~~tpY~g-----------g~f~l~i~fp~ 66 (69)
.++..+.+||++||++|++++ +.+|++. ++++|+++|+++|.|| ++|||+| |.|+|+|.||.
T Consensus 23 ~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~ 99 (186)
T 1zuo_A 23 SGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD 99 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-EcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence 456678899999999999987 6789998 7778999999999998 8999998 89999999974
No 50
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=99.85 Aligned_cols=54 Identities=30% Similarity=0.438 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.+.+||+||+++|+. +++++. +. +|+++|+++|.||++|||+||+|+|+|.||.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~-~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~ 78 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVT-IL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEE-EE-EETTEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEE-EC-CCCceeEEEEECCCCCCccCCEEEEEeeCCC
Confidence 478999999999985 467887 44 5789999999999999999999999999974
No 51
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.69 E-value=9.9e-17 Score=96.42 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCCEEEEe---cCCCCcc---eEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 4 VPTSSALRALSMEYKSLQEEPVEGFRVKL---VNDDNLF---EWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 4 ~~~~~~~~Rl~kEl~~l~~~~~~~~~~~~---~~~~nl~---~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
..++.+.+||++||++++ +++++++.. ++++|++ +|+++|. |++|||+||+|+|+|.||.
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~ 90 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNE 90 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCT
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCC
Confidence 344678999999999998 678898874 7888999 9999997 8889999999999999974
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.35 E-value=1.2e-13 Score=81.45 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCc----------EEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGG----------YFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg----------~f~l~i~fp~ 66 (69)
...+||++|++.|++ ++. ++++|+.+|.+.+.||++|+|+|| .|+|+|+||.
T Consensus 32 ~w~~RL~eE~k~L~k------~v~-p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe 93 (172)
T 2z6o_A 32 LWVQRLKEEYQSLIR------YVE-NNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPI 93 (172)
T ss_dssp HHHHHHHHHHHHHHH------HHH-HHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHH------Hhc-cCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCC
Confidence 448999999999988 345 677899999999999999999999 9999999963
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=98.06 E-value=5.1e-07 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.157 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCc----------EEEEEEEecC
Q psy623 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGG----------YFKVCVVWYK 66 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg----------~f~l~i~fp~ 66 (69)
.-..||..||..|-+ .+. .++++=.+|...+.||++|+|+|+ .|+|+++||.
T Consensus 34 ~w~~RlkeEy~alI~------yv~-~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~ 95 (168)
T 3kpa_A 34 KWTARLKEEYASLIT------YVE-HNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPV 95 (168)
T ss_dssp HHHHHHHHHHHHHHH------HHH-HHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHH------HHH-hcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCc
Confidence 356799999998754 111 223333479999999999999999 8999999874
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=95.40 E-value=0.031 Score=32.60 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhCCCCCE----EEEecCCCCcceEEEEEECCCCCCCCCcE---EEEEEEecC
Q psy623 11 RALSMEYKSLQEEPVEGF----RVKLVNDDNLFEWEVAIFGPPDTLYQGGY---FKVCVVWYK 66 (69)
Q Consensus 11 ~Rl~kEl~~l~~~~~~~~----~~~~~~~~nl~~w~~~i~GP~~tpY~gg~---f~l~i~fp~ 66 (69)
+|..+|+..+... -+++ .+. ..+|...++-+.+.|+-.++|+||. |.+.|.||.
T Consensus 31 ~~~~~dv~~~l~~-yp~L~p~t~~y-t~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~ 91 (162)
T 3r3q_A 31 RTTFHDSLALLDN-FHSLRPRTRVF-THSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPS 91 (162)
T ss_dssp HHHHHHHHHHHHH-CTTEEEEEEEE-ECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCT
T ss_pred hHHHHHHHHHHHh-CCCCceeeeeE-EcCCCChheEEEEECccCccccCcccccccEEEEeCc
Confidence 5667777776442 2222 233 5567777777777777779999999 667777753
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=77.69 E-value=2.5 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCcceEEEEEECCCCCCCCCcEEEEEEEe
Q psy623 36 DNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64 (69)
Q Consensus 36 ~nl~~w~~~i~GP~~tpY~gg~f~l~i~f 64 (69)
.+++.|.++|. .+|+|+.|.+-|.+
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~I 75 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICL 75 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEE
T ss_pred heEEEEEEEee----eeecCccccceEEE
Confidence 57999999998 68999999974443
No 56
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=59.61 E-value=8.1 Score=15.22 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhCCCCC
Q psy623 8 SALRALSMEYKSLQEEPVEG 27 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~ 27 (69)
.-..||.-|+...+.+|+.+
T Consensus 5 seldrlllelnavqhnppsg 24 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSG 24 (26)
T ss_pred HHHHHHHHHHhhhccCCCCC
Confidence 34578899999988888765
No 57
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=55.22 E-value=25 Score=19.48 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=19.0
Q ss_pred ceEEEEEECCCC----------------CCCCCcEEEEEEEecC
Q psy623 39 FEWEVAIFGPPD----------------TLYQGGYFKVCVVWYK 66 (69)
Q Consensus 39 ~~w~~~i~GP~~----------------tpY~gg~f~l~i~fp~ 66 (69)
-.+.+.|.||.+ +|.+-|.|.+.|.|-.
T Consensus 76 g~l~v~I~gPs~~~~~~~d~~dGy~V~YtP~~~G~y~I~Vk~~g 119 (138)
T 2nqc_A 76 GALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGG 119 (138)
T ss_dssp CCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESS
T ss_pred CcEEEEEECCCCCeeeEEECCCcEEEEEEcCCCEEEEEEEEECC
Confidence 445666677665 4667788888888753
No 58
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=52.09 E-value=9 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=17.2
Q ss_pred CcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 37 NLFEWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 37 nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
-..+|+|.-. .+|-|+|.|++|+
T Consensus 8 ~p~dW~VsRt-------~dGdYrL~itcpk 30 (76)
T 2rp4_A 8 SAAEWNVSRT-------PDGDYRLAITCPN 30 (76)
T ss_dssp SSCCCEEECC-------TTTBEEEEEEESC
T ss_pred CCccceeeec-------cCCceEEEEEeCc
Confidence 3467887744 3588999999986
No 59
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=49.87 E-value=8.9 Score=20.04 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHh
Q psy623 8 SALRALSMEYKSL 20 (69)
Q Consensus 8 ~~~~Rl~kEl~~l 20 (69)
.-.|||++|++-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 4568999999886
No 60
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=45.95 E-value=28 Score=17.31 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.1
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.+.|.+
T Consensus 62 p~~~G~y~i~V~~ 74 (89)
T 3cnk_A 62 LKDKGEYTLVVKW 74 (89)
T ss_dssp CCSCEEEEEEEEE
T ss_pred ECCCccEEEEEEE
Confidence 5566777777776
No 61
>1cq3_A Viral chemokine inhibitor; beta sandwich, cytokine; 1.85A {Cowpox virus} SCOP: b.27.1.1 PDB: 2grk_A 2ffk_A 2fin_A
Probab=45.44 E-value=5.2 Score=24.25 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=20.3
Q ss_pred EECCCCCCCC--CcEEEEEEEecCCCC
Q psy623 45 IFGPPDTLYQ--GGYFKVCVVWYKCSQ 69 (69)
Q Consensus 45 i~GP~~tpY~--gg~f~l~i~fp~~~~ 69 (69)
+.||+.|.|. ||-..+.+-|-+|||
T Consensus 64 ~~g~~ttyytivgGGL~m~fgft~Cp~ 90 (233)
T 1cq3_A 64 VKGDPTTYYTVVGGGLTMDFGFTKCPK 90 (233)
T ss_dssp EESCCEEEEEEEETTEEEEEEEESCCC
T ss_pred eecCCcceEEEEcCcEEEEecccCCCc
Confidence 6687777765 777899999999986
No 62
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=44.50 E-value=33 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.3
Q ss_pred EEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 41 WEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 41 w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
.|+.+.|.+..+=+|..+.+.+.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 57888998888889999999999843
No 63
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=43.64 E-value=21 Score=15.88 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhh
Q psy623 7 SSALRALSMEYKSLQ 21 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~ 21 (69)
....+||..|++.+.
T Consensus 27 v~~~~~~~~~~~~~~ 41 (42)
T 3g9r_A 27 KSKIKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345689999998875
No 64
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=43.54 E-value=38 Score=18.20 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=8.5
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.+.|.|
T Consensus 75 p~~~G~y~I~V~~ 87 (124)
T 2dmb_A 75 AAKPGTYVIYVRF 87 (124)
T ss_dssp CSSCEEEEEEEEE
T ss_pred cCCCEEEEEEEEE
Confidence 4445777777776
No 65
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=42.61 E-value=12 Score=19.52 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhCCCCC
Q psy623 8 SALRALSMEYKSLQEEPVEG 27 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~ 27 (69)
....+|.+||+++..++.|-
T Consensus 29 vtl~~L~~DYr~l~G~~iP~ 48 (89)
T 3rco_A 29 VALPRLQGEYRSLTGDWIPF 48 (89)
T ss_dssp EEHHHHHHHHHHHHSSCCCT
T ss_pred CCHHHHHHHHHHHhCCcCCh
Confidence 45679999999998887664
No 66
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=39.87 E-value=37 Score=17.06 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=8.7
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.+.|.+
T Consensus 69 p~~~G~y~i~V~~ 81 (96)
T 1v05_A 69 VKEKGDYILIVKW 81 (96)
T ss_dssp CSSCEEEEEEEEE
T ss_pred eCCCEEEEEEEEE
Confidence 4455777777776
No 67
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=37.82 E-value=31 Score=15.71 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=10.0
Q ss_pred CCCCCchHHHHHHHHHHHH
Q psy623 1 MAQVPTSSALRALSMEYKS 19 (69)
Q Consensus 1 m~~~~~~~~~~Rl~kEl~~ 19 (69)
|.+..+....+||.+|-.+
T Consensus 10 ~~~~lsa~EkaRLrRERR~ 28 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQ 28 (46)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 3344455667788888654
No 68
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.39 E-value=61 Score=18.78 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHHhhhCCCCCEEEEecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy623 15 MEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYKC 67 (69)
Q Consensus 15 kEl~~l~~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpY~gg~f~l~i~fp~~ 67 (69)
.|++++.++ .|+.+.-+.+.+ -.|++.+.-|++ |. ++|..|+.
T Consensus 6 ~~I~~WL~e--eG~~v~~~~~a~-a~fH~~v~~P~~-p~------~dVIrP~~ 48 (165)
T 3cxj_A 6 EMIKKWLDE--EGFLRMEVPDEN-ARFHYVVNYPED-HV------IDIIQPAG 48 (165)
T ss_dssp HHHHHHHHH--TTCEEEECCCTT-EEEEEEEECSTT-CE------EEEEEESS
T ss_pred HHHHHHHHH--cCceEecCCCCC-CceEEEEeCCCC-CE------EEEEeeCC
Confidence 455565543 345444244444 489999986665 32 66666653
No 69
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=36.91 E-value=46 Score=17.22 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=8.8
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.+.|.+
T Consensus 75 p~~~G~y~i~V~~ 87 (108)
T 2dj4_A 75 PSQEGPYMVSVKY 87 (108)
T ss_dssp CSSCEEEEEEEEE
T ss_pred eCCCeeEEEEEEE
Confidence 4455777777776
No 70
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=36.49 E-value=30 Score=19.04 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=7.1
Q ss_pred CCCCCCCCcEEEEEE
Q psy623 48 PPDTLYQGGYFKVCV 62 (69)
Q Consensus 48 P~~tpY~gg~f~l~i 62 (69)
-+..+-++|+|.|.|
T Consensus 21 l~~~~~edgiYtlev 35 (133)
T 2bsj_A 21 LNHQVNENDVYTFEV 35 (133)
T ss_dssp CCCCCCTTCCEEEEE
T ss_pred CCCCCCcCceEEEEE
Confidence 334444555555544
No 71
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=34.28 E-value=23 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhCCCCC
Q psy623 8 SALRALSMEYKSLQEEPVEG 27 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~~~~~~ 27 (69)
....+|.+||+++..++.|-
T Consensus 27 vtl~~L~~dYr~~~G~~iP~ 46 (102)
T 3s93_A 27 LSPQELEKEYLLMVGNHLPL 46 (102)
T ss_dssp BCHHHHHHHHHHHHSSCCCT
T ss_pred cCHHHHHHHHHHHcCCcCCc
Confidence 45679999999998887664
No 72
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=33.24 E-value=54 Score=17.01 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=8.8
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|-+-|.|.+.|.+
T Consensus 63 P~e~G~h~v~V~~ 75 (102)
T 2dlg_A 63 PQEMGVHTVSVKY 75 (102)
T ss_dssp CCTTCEEEEEEES
T ss_pred ecCCEeEEEEEEE
Confidence 4556777777776
No 73
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=32.36 E-value=33 Score=19.34 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.5
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEecC
Q psy623 40 EWEVAIFGPPDTLYQGGYFKVCVVWYK 66 (69)
Q Consensus 40 ~w~~~i~GP~~tpY~gg~f~l~i~fp~ 66 (69)
-.|+.+.|.+..+=+|..+.+.++|-+
T Consensus 106 G~HvML~gL~~~l~~G~~v~lTL~Fe~ 132 (149)
T 1x9l_A 106 GDHVMLMGLKRPLKVGETVNITLKATD 132 (149)
T ss_dssp SSEEEEEEECSCCCTTEEEEEEECBTT
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 357888898888889999999999843
No 74
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=28.68 E-value=12 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.505 Sum_probs=16.0
Q ss_pred cceEEEEEECCCCCCCCC
Q psy623 38 LFEWEVAIFGPPDTLYQG 55 (69)
Q Consensus 38 l~~w~~~i~GP~~tpY~g 55 (69)
-++|.+.+.|..+|+||+
T Consensus 220 ~yrFDI~LqG~~eTvf~~ 237 (238)
T 3t63_M 220 AYRFDIVLRGQRKTHFEN 237 (238)
T ss_dssp EEECCEEECCEEECCSCC
T ss_pred eEEEEEEEcCCCCccCCc
Confidence 478999999999999986
No 75
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=28.47 E-value=48 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhh
Q psy623 8 SALRALSMEYKSLQ 21 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~ 21 (69)
.+.+||.||.....
T Consensus 15 g~vkRL~KE~~~Y~ 28 (116)
T 3mxz_A 15 STCKRIVKELHSYE 28 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57789999986554
No 76
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=27.97 E-value=37 Score=13.46 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhh
Q psy623 8 SALRALSMEYKSLQE 22 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~~ 22 (69)
...+||.+|.-.+..
T Consensus 8 anvkrlekevgkleg 22 (28)
T 4dac_A 8 ANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhh
Confidence 346899999988764
No 77
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=27.71 E-value=51 Score=17.56 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHhh
Q psy623 7 SSALRALSMEYKSLQ 21 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~ 21 (69)
+.+.+||.||.....
T Consensus 10 tg~vkRL~KE~~~Y~ 24 (106)
T 1qsd_A 10 VKALKRLTKEEGYYQ 24 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357899999986553
No 78
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=26.45 E-value=55 Score=17.45 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhh
Q psy623 8 SALRALSMEYKSLQ 21 (69)
Q Consensus 8 ~~~~Rl~kEl~~l~ 21 (69)
.+.+||.||.....
T Consensus 14 ~~vkRL~KE~~~Y~ 27 (108)
T 1h7c_A 14 GVVRRLVKERVMYE 27 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57789999986554
No 79
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=25.34 E-value=1e+02 Score=17.75 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=21.5
Q ss_pred ceEEEEEECCCCC-------------CCCCcEEEEEEEecCC
Q psy623 39 FEWEVAIFGPPDT-------------LYQGGYFKVCVVWYKC 67 (69)
Q Consensus 39 ~~w~~~i~GP~~t-------------pY~gg~f~l~i~fp~~ 67 (69)
.+|.++-.|..++ |-.-|.++|.++-++|
T Consensus 38 lewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpP 79 (161)
T 2cu9_A 38 LEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPP 79 (161)
T ss_dssp EEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCC
Confidence 4888777775544 6778999999888655
No 80
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.33 E-value=78 Score=15.93 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhhCCCC
Q psy623 7 SSALRALSMEYKSLQEEPVE 26 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~ 26 (69)
...++||.++++.|+.....
T Consensus 71 ~g~r~~il~~I~~Lr~~~~~ 90 (91)
T 1v85_A 71 SSHRRVILTELERVRSGPSS 90 (91)
T ss_dssp HHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 35678999999999876544
No 81
>2q8o_A GITR ligand; TNF, dimer, unknown function; 1.75A {Mus musculus} SCOP: b.22.1.1 PDB: 3fc0_A 2qdn_A 3b9i_A
Probab=24.05 E-value=12 Score=21.01 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.0
Q ss_pred CCCCCCCCcEEEEE
Q psy623 48 PPDTLYQGGYFKVC 61 (69)
Q Consensus 48 P~~tpY~gg~f~l~ 61 (69)
-..|.|.||+|+|+
T Consensus 89 t~~s~ylGGVF~L~ 102 (136)
T 2q8o_A 89 DFQILPIGGVYELH 102 (136)
T ss_dssp SSCCEEEEEEEEEC
T ss_pred cCcceeecceeecC
Confidence 33788999999874
No 82
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=96 Score=16.58 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=9.6
Q ss_pred CCCCcEEEEEEEec
Q psy623 52 LYQGGYFKVCVVWY 65 (69)
Q Consensus 52 pY~gg~f~l~i~fp 65 (69)
|-+-|.|.+.|.|-
T Consensus 81 P~~~G~y~I~V~~~ 94 (125)
T 2eec_A 81 PMAPGNYLISVKYG 94 (125)
T ss_dssp CSSCEEEEEEEEES
T ss_pred cCCCeEEEEEEEEC
Confidence 45667777777764
No 83
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=22.98 E-value=86 Score=15.92 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=8.2
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.+.|.+
T Consensus 71 p~~~G~y~i~V~~ 83 (100)
T 3rgh_A 71 PLCPGAYTVTIKY 83 (100)
T ss_dssp CCSSEEEEEEEEE
T ss_pred eCCCeeEEEEEEE
Confidence 3444677777766
No 84
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=22.34 E-value=61 Score=18.22 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHhhh
Q psy623 5 PTSSALRALSMEYKSLQE 22 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~~ 22 (69)
++.....+|+.||..|..
T Consensus 6 ~T~~g~~~L~~El~~L~~ 23 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKS 23 (158)
T ss_dssp EEHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 445566777777776654
No 85
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.15 E-value=90 Score=17.54 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=11.1
Q ss_pred CchHHHHHHHHHHHHhh
Q psy623 5 PTSSALRALSMEYKSLQ 21 (69)
Q Consensus 5 ~~~~~~~Rl~kEl~~l~ 21 (69)
++.....+|..||..|.
T Consensus 6 lT~~g~~~L~~EL~~L~ 22 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLW 22 (158)
T ss_dssp ECHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 44556677777777663
No 86
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=21.47 E-value=54 Score=17.40 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=8.9
Q ss_pred CCCCcEEEEEEEe
Q psy623 52 LYQGGYFKVCVVW 64 (69)
Q Consensus 52 pY~gg~f~l~i~f 64 (69)
|.+-|.|.++|.+
T Consensus 89 p~~~G~~~i~V~~ 101 (128)
T 2dib_A 89 PFEKGLHVVEVTY 101 (128)
T ss_dssp CSSCSEEEEEEBS
T ss_pred eCCCEeEEEEEEE
Confidence 5566777777766
No 87
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=21.46 E-value=1.6e+02 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=9.5
Q ss_pred CCCCCcEEEEEEEe
Q psy623 51 TLYQGGYFKVCVVW 64 (69)
Q Consensus 51 tpY~gg~f~l~i~f 64 (69)
+|-+-|.|.+.|.|
T Consensus 320 ~P~~~G~~~I~V~~ 333 (347)
T 4b7l_A 320 LPKVTGLHKVTVLF 333 (347)
T ss_dssp CCCSSSEEEEEEEE
T ss_pred EECCCEeEEEEEEE
Confidence 35566777777776
No 88
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=21.16 E-value=73 Score=16.96 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=15.7
Q ss_pred EECCCCCCCCCcEEEEEEEecCC
Q psy623 45 IFGPPDTLYQGGYFKVCVVWYKC 67 (69)
Q Consensus 45 i~GP~~tpY~gg~f~l~i~fp~~ 67 (69)
+.|++-.|=...+|.+ .||+-
T Consensus 6 l~g~d~~p~r~HVf~l--~FP~e 26 (100)
T 1whv_A 6 SGGPDLQPKRDHVLHV--TFPKE 26 (100)
T ss_dssp CCCSCCCCCCCSEEEE--ECCTT
T ss_pred cCCCCCCCCCCeEEEE--eCChh
Confidence 4577777777888888 88873
No 89
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=21.04 E-value=76 Score=14.70 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhh
Q psy623 9 ALRALSMEYKSLQE 22 (69)
Q Consensus 9 ~~~Rl~kEl~~l~~ 22 (69)
-.-||.+|+..|++
T Consensus 7 EILRLErEIE~Lqr 20 (51)
T 2lw9_A 7 EILRLEKEIEDLQR 20 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34688888888765
No 90
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy, dimerization, image processing, computer-assist molecular sequence DATA; 10.50A {Hepatitis e virus}
Probab=20.74 E-value=66 Score=22.52 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.8
Q ss_pred CCCCCCCcEEEEEEEe
Q psy623 49 PDTLYQGGYFKVCVVW 64 (69)
Q Consensus 49 ~~tpY~gg~f~l~i~f 64 (69)
.+++|.|+.|.+++..
T Consensus 289 tNt~YTGpLFLVEl~~ 304 (660)
T 3iyo_A 289 TNTPYTGALGLLDFAL 304 (660)
T ss_pred ccCccccceEEEEEEE
Confidence 5788999999999875
No 91
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=20.68 E-value=24 Score=17.61 Aligned_cols=9 Identities=44% Similarity=0.947 Sum_probs=7.1
Q ss_pred CCCCcEEEE
Q psy623 52 LYQGGYFKV 60 (69)
Q Consensus 52 pY~gg~f~l 60 (69)
.|++|+|+-
T Consensus 8 iYEnGVfkP 16 (69)
T 2nwt_A 8 VYENGVFKP 16 (69)
T ss_dssp EEETTEEEE
T ss_pred EEECCEEeE
Confidence 588999864
No 92
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.67 E-value=79 Score=15.42 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhhhCCC
Q psy623 7 SSALRALSMEYKSLQEEPV 25 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~ 25 (69)
...++||.+.++.++..+.
T Consensus 60 ~ghR~kIl~ai~~L~~~~~ 78 (80)
T 2eam_A 60 SGHRQRILQAIQLLPSGPS 78 (80)
T ss_dssp HHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3577899999999886554
No 93
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=20.53 E-value=72 Score=17.90 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=9.7
Q ss_pred CCcEEEEEEEe
Q psy623 54 QGGYFKVCVVW 64 (69)
Q Consensus 54 ~gg~f~l~i~f 64 (69)
||-.|++.|.|
T Consensus 43 EG~~Y~iki~F 53 (141)
T 1kmt_A 43 EGVEYRIKISF 53 (141)
T ss_dssp TTCEEEEEEEE
T ss_pred CCcEEEEEEEE
Confidence 67899999998
No 94
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.07 E-value=1.1e+02 Score=16.05 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEEec--CCCCcceEEEEEECCCC
Q psy623 7 SSALRALSMEYKSLQEEPVEGFRVKLV--NDDNLFEWEVAIFGPPD 50 (69)
Q Consensus 7 ~~~~~Rl~kEl~~l~~~~~~~~~~~~~--~~~nl~~w~~~i~GP~~ 50 (69)
+...+++++..++.. -+-.+..... -++.+.++.+.+.||+=
T Consensus 20 sllv~km~~~a~~~g--i~v~i~a~~~~~~~~~~~~~DvvLLgPQV 63 (108)
T 3nbm_A 20 AQLANAINEGANLTE--VRVIANSGAYGAHYDIMGVYDLIILAPQV 63 (108)
T ss_dssp HHHHHHHHHHHHHHT--CSEEEEEEETTSCTTTGGGCSEEEECGGG
T ss_pred HHHHHHHHHHHHHCC--CceEEEEcchHHHHhhccCCCEEEEChHH
Confidence 345566666655532 2222322312 13446678899999863
Done!