RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy623
(69 letters)
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 89.0 bits (221), Expect = 1e-24
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
L + L + PVEGF L++D++L+ WEV I GPPDTLY+GG FK
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKA 69
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 87.5 bits (217), Expect = 5e-24
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ S+ +AL +E K LQEEPVEGFRV LV++ +L+ WEVAIFGPP+T Y+GGYFK
Sbjct: 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKA 59
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 86.3 bits (214), Expect = 9e-24
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+AL+ L EYK L P EG +N++N FEWE I GP DT ++ G F
Sbjct: 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 55
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 85.9 bits (213), Expect = 1e-23
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ +A + L E + L ++ G +++N+F W+ I GPPDT Y G F
Sbjct: 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNA 56
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 75.4 bits (186), Expect = 9e-20
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFK 59
+ + +S + L E +LQ +P G + + +++ +W V + G P TLY+G F+
Sbjct: 15 VPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQ 74
Query: 60 V 60
+
Sbjct: 75 L 75
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 73.1 bits (180), Expect = 7e-19
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ +A + E + + P + V+ N+ W V G +T+Y +K+
Sbjct: 13 KTKYNLGNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKI 71
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 73.9 bits (182), Expect = 9e-19
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
++ A R L ++K ++E+ G + DN+ W I GP DT Y+ G F++
Sbjct: 2 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRL 55
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 73.5 bits (181), Expect = 1e-18
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
A L ++ L+E +G K V +++ EWEV I G ++++QG F++
Sbjct: 21 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQL 74
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 73.1 bits (180), Expect = 1e-18
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
++ A + L ++K LQ++P G D+N+ W IFGP DT + GG FK+
Sbjct: 2 STPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKL 55
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 72.3 bits (178), Expect = 1e-18
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+A + E + P + + +N+ W V G +T+Y +K+
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKL 57
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 74.1 bits (182), Expect = 2e-18
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
SS + + E ++++++P ++ V++ ++ + GPP T Y+GG F V
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 54
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 72.3 bits (178), Expect = 3e-18
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKV 60
+S L E K + + GF K +L W+V I G P T ++GG +K+
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 72.0 bits (177), Expect = 3e-18
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKV 60
+ AL L+ E K+ +++ GF + NL WE AI G T ++GG FK+
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 71.5 bits (176), Expect = 4e-18
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S + + E ++++++P ++ V++ ++ + GPP T Y+GG F V
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 53
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 71.9 bits (177), Expect = 4e-18
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S + L E ++L G DNLF+W + GP DT+Y+ +K+
Sbjct: 6 ERHSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKL 60
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 70.1 bits (172), Expect = 3e-17
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ L E +L +G DNLF+W I G T+Y+ +K+
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKL 81
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 69.8 bits (171), Expect = 5e-17
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK 59
++A + L +Y ++++PV + + N+ EW + GP T Y+GGY+
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYH 64
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 68.8 bits (169), Expect = 5e-17
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKV 60
+S L+ L E K +++ GF K V +L +WE I G T + GG + +
Sbjct: 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 67.7 bits (166), Expect = 1e-16
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+A R L E + +++ ++ FR V++ NL W+ I P + Y G F++
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRI 53
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 67.7 bits (166), Expect = 2e-16
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+R + E +L +P +G +V N+++L + +V I GP T Y GG F++
Sbjct: 11 PPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRM 64
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 67.0 bits (164), Expect = 3e-16
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ S + L E L+ +V + + L +++ P + YQGG F+
Sbjct: 7 DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQF 65
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 66.5 bits (163), Expect = 4e-16
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ AL+ + E + L +P V D+LF W+ I GPP++ YQGG F +
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFL 55
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 67.9 bits (166), Expect = 4e-16
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S L L E K ++ E V+ + D N FEW I GP T Y+GG+F +
Sbjct: 21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTL 74
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 66.6 bits (163), Expect = 4e-16
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S AL+ + E L +P V D++F W+ I GP D+ YQGG F +
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFL 70
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 66.5 bits (163), Expect = 5e-16
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ A + E + LQ++P R +D N+ W + P Y F +
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNL 55
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 66.2 bits (162), Expect = 7e-16
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ AL+ ++ E L ++P V D++F W+ I GP D+ Y GG F +
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFL 72
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics
consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL
conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 66.7 bits (163), Expect = 8e-16
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S++ + + E + +P DN++EW I GPP ++Y+GG F +
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFL 99
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 65.4 bits (160), Expect = 1e-15
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
++ R + E + L EPV G + + + N + V I GP D+ ++GG FK+
Sbjct: 3 SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKL 56
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 65.0 bits (159), Expect = 2e-15
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+S + + E + L +PV G + DDNL ++V I GP + Y+ G F++
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFEL 56
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 65.1 bits (159), Expect = 2e-15
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 6 TSSALRALSMEYKSLQEE---------PVEGFRVKL--VNDDNLFEWEVAIFGPPDTLYQ 54
+ + + EYK + + P G L +++ +L +WE I GP DT Y+
Sbjct: 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYE 63
Query: 55 GGYFKV 60
F++
Sbjct: 64 NHQFRI 69
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 64.3 bits (157), Expect = 4e-15
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ L E L EP G D + + I G +T Y+ G FK+
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKL 55
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 64.9 bits (158), Expect = 1e-14
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ AL+ + E L +P V D++F W+ I GP D+ YQGG F +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFL 54
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 61.5 bits (150), Expect = 3e-14
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
++ E ++L EP G V +N + + I GP T Y+GG +K+
Sbjct: 6 ITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKL 52
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 59.6 bits (145), Expect = 2e-13
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 16 EYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ + + G+ ++L + + +++V GP T Y+GG +KV
Sbjct: 7 KQCDFTKLIMAGYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKV 50
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 59.2 bits (144), Expect = 3e-13
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
MA + A++ + E+K + E +V LV D+N E I GPPDT Y+GG
Sbjct: 3 MAM--ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 59
Query: 58 FKV 60
+++
Sbjct: 60 YQL 62
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 59.3 bits (144), Expect = 3e-13
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
VP L E + Q EG L + D L W IFG P T+++
Sbjct: 17 QGIVP---RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRI 73
Query: 58 FKV 60
+ +
Sbjct: 74 YSL 76
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 60.8 bits (147), Expect = 4e-13
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFR---VKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+++ R L+ E +L +++ L +V I GP DT Y G
Sbjct: 69 ANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGC 128
Query: 58 FK 59
F+
Sbjct: 129 FE 130
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 58.5 bits (142), Expect = 6e-13
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
M+ + R M+Y L + + D + E+ V GP T Y+ G + +
Sbjct: 5 MSGAGNLRSNRRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWML 59
Query: 61 CV 62
V
Sbjct: 60 HV 61
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 58.6 bits (142), Expect = 8e-13
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S R + + L E E L E+ V +GP T Y+GG +KV
Sbjct: 24 SPGKRRMDTDVIKLIESKHEV-----TILGGLNEFVVKFYGPQGTPYEGGVWKV 72
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 59.2 bits (143), Expect = 1e-12
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 1 MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+ A++ + E+K + E +V LV D+N E I GPPDT Y+GG
Sbjct: 50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 108
Query: 58 FKV 60
+++
Sbjct: 109 YQL 111
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 57.5 bits (139), Expect = 2e-12
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
+ L E + Q+ +G + ++ D L W I GPP T+Y+
Sbjct: 28 HCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI 87
Query: 58 FKV 60
+ +
Sbjct: 88 YSL 90
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 57.8 bits (140), Expect = 2e-12
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 6 TSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ A++ + E+K + E +V LV D+N E I GPPDT Y+GG +++
Sbjct: 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQL 59
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 57.0 bits (138), Expect = 2e-12
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 2 AQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
V R L E + Q+ +G + ++ D L W I GPP T+Y+ +
Sbjct: 20 TGVKVPRNFR-LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 78
Query: 59 KV 60
+
Sbjct: 79 SL 80
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 55.8 bits (135), Expect = 4e-12
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 1 MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
M++VP L E + + E L + D + +W I GPP + ++
Sbjct: 2 MSKVP---RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRI 58
Query: 58 FKV 60
+ +
Sbjct: 59 YSL 61
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 55.9 bits (135), Expect = 7e-12
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 6 TSSALRALSMEYKSLQEEPV-----------EGFRVKLVNDDNLFEWEVAIFGPPDTLY- 53
+ + + + + K L EE + V+ D ++ W + + P D++Y
Sbjct: 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65
Query: 54 -QGGYFKV 60
G +++
Sbjct: 66 GAGNTYQL 73
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating
tgtwinscan_2721, structural genomics, structural
genomics consortium, SGC; 2.11A {Toxoplasma gondii}
SCOP: d.20.1.1
Length = 193
Score = 56.3 bits (136), Expect = 8e-12
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
+ + G ++V ++ W I GP T Y+GG+F +
Sbjct: 48 QRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTL 96
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 55.5 bits (134), Expect = 1e-11
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S+A + + L + + D+L +++ I P + Y+ G F
Sbjct: 24 ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVF 75
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 53.1 bits (128), Expect = 7e-11
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKV 60
S+A + + L + + D+L +++ I P + Y+ G F
Sbjct: 4 ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVF 55
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A
{Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 53.4 bits (128), Expect = 8e-11
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLV--NDDNLFEWEVAIFG-PPDTLYQGGY 57
A + A L E + + + V +D+L++W V + PD+
Sbjct: 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDL 79
Query: 58 FK 59
Sbjct: 80 QI 81
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 49.7 bits (119), Expect = 2e-09
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVA----IFGPPDTLYQGGYFKV 60
S+A L + SL P V D+ + I P + Y G
Sbjct: 27 LSAARIRLKRDLDSLDLPPTVTLNVITS-PDSADRSQSPKLEVIVRPDEGYYNYGSINF 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.39
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 20/62 (32%)
Query: 4 VPTS-SALRALSMEYKSLQEEPVEGFR----------VKLVN-DDNLFEWEVAIFGPPDT 51
VP+ ++ L+ E +Q+ V + LVN NL V + GPP +
Sbjct: 334 VPSPMLSISNLTQE--QVQDY-VNKTNSHLPAGKQVEISLVNGAKNL----V-VSGPPQS 385
Query: 52 LY 53
LY
Sbjct: 386 LY 387
>1yu0_A Major tropism determinant (MTD-P1); C-type lectin, beta sandwich,
beta prism, variability, diver generating retroelement,
viral protein; 1.56A {Bordetella phage bpp-1} SCOP:
b.163.1.1 d.169.1.8 PDB: 2iou_A 1yu1_A 1yu2_A 1yu4_A
1yu3_A
Length = 381
Score = 26.8 bits (58), Expect = 0.55
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 40 EWEVAIFGPPDTLYQGGY 57
E++ FG + GG
Sbjct: 257 EFQALAFGTTEATSSGGT 274
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 24.0 bits (52), Expect = 4.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1 MAQVPTSSALRALSMEYKSLQEEPVE 26
+ ++ + L+A +EY LQEE ++
Sbjct: 304 VFEMDIAKQLQAYEVEYHVLQEELID 329
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 24.0 bits (53), Expect = 4.3
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 18 KSLQEEPVEGFRVKLVN 34
K+L+EE G+RV VN
Sbjct: 35 KALREE---GYRVINVN 48
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons,
IFNA2, ifnar2, SUB-complex of the interferon signaling
complex; 2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A
2ksx_B 2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 23.5 bits (50), Expect = 7.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 23 EPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
E F++ L N ++ WE+ T Y Y
Sbjct: 4 ESCT-FKISLRNFRSILSWELKNHSIVPTHYTLLYT 38
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 23.2 bits (49), Expect = 9.9
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 29 RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVWYKCSQ 69
R+ VN N+ +WE F + Y + KC Q
Sbjct: 9 RMNSVNFKNILQWESPAFAKGQLTFTAQYLSYRIFQDKCMQ 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,063,394
Number of extensions: 46610
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 56
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)