RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy623
(69 letters)
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 63.5 bits (154), Expect = 1e-15
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
L + L + PVEGF L++D++L+ WEV I GPPDTLY+GG FK + +
Sbjct: 4 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTF 55
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 62.1 bits (150), Expect = 8e-15
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
A L ++ L+E +G K V +++ EWEV I G ++++QG F++ + +
Sbjct: 2 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHF 59
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 61.7 bits (149), Expect = 9e-15
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S + + E ++++++P ++ V++ ++ + GPP T Y+GG F V +
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI 55
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 60.5 bits (146), Expect = 3e-14
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
S + L E ++L G + DNLF+W + GP DT+Y+ +K+ + +
Sbjct: 6 ERHSVSKRLQQELRTLLMSGDPGITA-FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEF 64
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 59.3 bits (143), Expect = 5e-14
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
+S + L E +LQ +P G + + +++ +W V + G P TLY+G F++ +
Sbjct: 2 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 60
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 59.8 bits (144), Expect = 9e-14
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
S+L L + ++ PV+GF LV+D+++++WEV + GPPDTLY+GG+FK + +
Sbjct: 1 SSLL-LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDF 56
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 57.5 bits (138), Expect = 5e-13
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
AL L+ E K+ +++ GF + NL WE AI G T ++GG FK+ +++
Sbjct: 3 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 55.9 bits (134), Expect = 2e-12
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
S R + + L E E L E+ V +GP T Y+GG +KV V
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVT-----ILGGLNEFVVKFYGPQGTPYEGGVWKVRVDL 54
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 54.8 bits (131), Expect = 6e-12
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
R L E + +++ ++ FR V++ NL W+ I P + Y G F++ + +
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINF 54
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 54.7 bits (131), Expect = 6e-12
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
++ A R L ++K ++E+ G + DN+ W I GP DT Y+ G F++ + +
Sbjct: 1 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEF 58
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 54.0 bits (129), Expect = 1e-11
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
T+ + R L ++K LQE+P G +DN+ WE IFGP +T ++ G FK+ + +
Sbjct: 1 TTPSRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLSLEF 58
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 53.6 bits (128), Expect = 1e-11
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
A + E + LQ++P R +D N+ W + P Y F + + +
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISF 55
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 53.7 bits (128), Expect = 2e-11
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
+ +A + L E + L ++ G +++N+F W+ I GPPDT Y G F + +
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 59
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 51.3 bits (122), Expect = 1e-10
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S++ + + E + +P DN++EW I GPP ++Y+GG F + +
Sbjct: 1 STSAKRIQKELAEITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDI 55
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 49.7 bits (118), Expect = 5e-10
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
S+A + + L + + D+L +++ + P + Y+ G F
Sbjct: 2 SAAQLRIQKDINELNLPKTCD--ISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSF 54
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 48.9 bits (116), Expect = 5e-10
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+ E + P + V+ +N+ W V G +T+Y +K+ +
Sbjct: 3 IQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKI 51
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 49.0 bits (116), Expect = 9e-10
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+ R + E + L EPV G + + ++ N + V I GP D+ ++GG FK+ +
Sbjct: 1 AGLPRRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLEL 55
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 49.0 bits (116), Expect = 9e-10
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+A + L +Y ++++PV + + N+ EW + GP T Y+GGY+ +
Sbjct: 1 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKL 54
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 49.0 bits (116), Expect = 1e-09
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
R M+Y L + + D + E+ V GP T Y+ G + + V
Sbjct: 3 RRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWMLHV 49
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 48.6 bits (115), Expect = 1e-09
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
+ L E +L +G DNLF+W I G T+Y+ +K+ + +
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEF 56
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 48.2 bits (114), Expect = 1e-09
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCVVW 64
AL+ + E + L +P V D+LF W+ I GPP++ YQGG F + + +
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHF 56
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 47.8 bits (113), Expect = 2e-09
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+R + E +L +P +G +V N+++L + +V I GP T Y GG F++ +
Sbjct: 5 PHIIRLVYKEVTTLTADPPDGIKVF-PNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 59
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 47.1 bits (111), Expect = 6e-09
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
L+ + G ++V ++ W I GP T Y+GG+F + +
Sbjct: 16 LQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDI 67
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 46.4 bits (109), Expect = 8e-09
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 6 TSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+ A++ + E+K + E +V LV D+N E I GPPDT Y+GG +++ +
Sbjct: 2 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 60
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 45.9 bits (108), Expect = 1e-08
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
+S + + E + L +PV G + +DDNL ++V I GP + Y+ G F++ +
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELEL 56
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 45.6 bits (107), Expect = 2e-08
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKVCV 62
L E L EP G + D + + I G +T Y+ G FK+ V
Sbjct: 2 QRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEV 55
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 42.1 bits (98), Expect = 4e-07
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 6 TSSALRALSMEYKSLQEEPVE--GFRVKLVNDDNLFEWEVAIFG-PPDTLYQGGYFKVCV 62
+ A L E + + G + +D+L++W V + PD+ +
Sbjct: 2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61
Query: 63 VWYKC 67
Sbjct: 62 KEGIE 66
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 39.2 bits (91), Expect = 4e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 2 AQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDD---NLFEWEVAIFGPPDTLYQGGYF 58
+VP + L E + Q+ +G + DD L W I GPP T+Y+ +
Sbjct: 2 VKVPRN---FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 58
Query: 59 KVCVV 63
+ +
Sbjct: 59 SLKIE 63
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 37.3 bits (86), Expect = 2e-05
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 2 AQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYF 58
++VP + L E + + E L + D + +W I GPP + ++ +
Sbjct: 1 SKVPRNFRLLE---ELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIY 57
Query: 59 KVCV 62
+ +
Sbjct: 58 SLSI 61
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 34.2 bits (78), Expect = 3e-04
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKV-CVVWY 65
V +D + + G Y+G + + +W
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWL 74
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 23.8 bits (51), Expect = 1.8
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 47 GPPDTLYQGGYFKVCVV---WYK 66
G PD +Y G +V ++ W +
Sbjct: 6 GKPDQVYDGSKIRVGIIHARWNR 28
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 99
Score = 22.6 bits (49), Expect = 4.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 23 EPVEGFRVKLVNDDNLFEWE 42
E VE +V + + WE
Sbjct: 79 ELVENMKVPYFGNKRVLRWE 98
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 22.1 bits (46), Expect = 9.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 39 FEWEVAIFGPPDTLYQGGYF 58
E++ FG + GG
Sbjct: 86 NEFQALAFGTTEATSSGGTD 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,808
Number of extensions: 9861
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 33
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)