Query psy6230
Match_columns 699
No_of_seqs 468 out of 2862
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:07:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 2.2E-72 4.7E-77 645.5 42.4 394 242-697 484-879 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 5.2E-68 1.1E-72 626.7 43.8 410 247-694 521-935 (936)
3 KOG0188|consensus 100.0 4.7E-68 1E-72 583.3 35.2 409 240-697 487-895 (895)
4 TIGR03683 A-tRNA_syn_arch alan 100.0 6.8E-67 1.5E-71 617.2 37.0 400 216-694 502-902 (902)
5 PRK00252 alaS alanyl-tRNA synt 100.0 5.3E-66 1.2E-70 610.9 43.0 386 248-697 478-865 (865)
6 PRK13902 alaS alanyl-tRNA synt 100.0 2.2E-66 4.7E-71 612.8 36.5 401 216-696 498-899 (900)
7 TIGR00344 alaS alanine--tRNA l 100.0 1.6E-64 3.4E-69 595.9 41.6 367 247-676 484-851 (851)
8 COG2872 Predicted metal-depend 100.0 2.6E-45 5.7E-50 371.5 15.7 233 217-494 4-239 (241)
9 PLN02961 alanine-tRNA ligase 100.0 2.5E-42 5.5E-47 351.9 19.4 208 247-488 2-222 (223)
10 KOG2105|consensus 100.0 1.8E-39 3.9E-44 325.1 28.2 368 245-696 41-411 (415)
11 PRK01584 alanyl-tRNA synthetas 100.0 1.1E-30 2.4E-35 294.9 17.0 146 327-489 447-592 (594)
12 KOG0188|consensus 100.0 1E-29 2.2E-34 281.2 11.0 172 82-277 639-810 (895)
13 COG0013 AlaS Alanyl-tRNA synth 99.9 4.6E-23 1E-27 238.7 8.9 107 58-188 619-725 (879)
14 PLN02900 alanyl-tRNA synthetas 99.9 1.3E-21 2.8E-26 232.9 12.3 157 59-245 651-808 (936)
15 PRK12305 thrS threonyl-tRNA sy 99.8 1.1E-18 2.4E-23 202.2 18.7 145 333-495 7-162 (575)
16 PLN02837 threonine-tRNA ligase 99.8 3.2E-18 7E-23 198.6 19.4 154 319-493 30-201 (614)
17 PRK00413 thrS threonyl-tRNA sy 99.8 1E-17 2.2E-22 196.5 19.8 163 312-495 48-227 (638)
18 PRK13902 alaS alanyl-tRNA synt 99.7 9.4E-18 2E-22 200.0 13.8 108 83-213 663-771 (900)
19 TIGR03683 A-tRNA_syn_arch alan 99.7 4.3E-18 9.3E-23 202.9 9.9 105 84-211 668-773 (902)
20 PRK00252 alaS alanyl-tRNA synt 99.7 4.7E-18 1E-22 202.9 10.0 101 89-212 628-728 (865)
21 TIGR00344 alaS alanine--tRNA l 99.7 6E-18 1.3E-22 201.1 9.0 81 90-186 636-716 (851)
22 PRK12444 threonyl-tRNA synthet 99.7 2.5E-16 5.4E-21 184.4 21.1 142 333-494 73-230 (639)
23 TIGR00418 thrS threonyl-tRNA s 99.6 4.5E-15 9.7E-20 171.8 15.0 137 336-493 1-154 (563)
24 PLN02908 threonyl-tRNA synthet 99.6 1.1E-13 2.3E-18 163.0 19.5 165 312-495 99-278 (686)
25 PF07973 tRNA_SAD: Threonyl an 99.5 7.2E-15 1.6E-19 111.2 5.1 44 103-162 1-44 (44)
26 PRK01584 alanyl-tRNA synthetas 99.5 1.5E-14 3.2E-19 164.5 4.2 60 90-165 533-592 (594)
27 PF07973 tRNA_SAD: Threonyl an 99.4 1.9E-13 4.2E-18 103.4 5.5 44 427-486 1-44 (44)
28 COG0441 ThrS Threonyl-tRNA syn 99.4 4.7E-13 1E-17 152.2 9.8 139 332-490 26-171 (589)
29 COG2872 Predicted metal-depend 99.4 3.2E-13 6.8E-18 137.9 6.2 73 82-170 164-239 (241)
30 PLN02961 alanine-tRNA ligase 99.3 2.8E-12 6.1E-17 131.2 4.7 48 100-164 175-222 (223)
31 smart00863 tRNA_SAD Threonyl a 99.3 3.8E-12 8.2E-17 96.4 4.0 44 103-162 1-44 (44)
32 smart00863 tRNA_SAD Threonyl a 99.2 2.9E-11 6.4E-16 91.6 4.0 44 427-486 1-44 (44)
33 KOG2105|consensus 99.0 5.2E-10 1.1E-14 113.8 8.8 71 102-188 198-268 (415)
34 KOG2571|consensus 98.8 1.4E-09 3.1E-14 126.8 2.7 59 14-72 722-780 (862)
35 PF01411 tRNA-synt_2c: tRNA sy 98.8 3E-09 6.5E-14 122.2 3.9 70 245-329 482-552 (552)
36 PRK12305 thrS threonyl-tRNA sy 98.1 2.2E-06 4.9E-11 99.8 4.8 56 99-171 100-162 (575)
37 PF02272 DHHA1: DHHA1 domain; 98.1 5.8E-06 1.3E-10 68.3 5.3 66 619-691 2-68 (68)
38 PF03142 Chitin_synth_2: Chiti 97.9 3.1E-06 6.6E-11 96.1 1.9 56 17-72 443-498 (527)
39 PRK00413 thrS threonyl-tRNA sy 97.5 0.00014 3.1E-09 85.9 7.3 58 102-176 168-232 (638)
40 PRK12444 threonyl-tRNA synthet 97.2 0.00064 1.4E-08 80.4 7.6 52 101-169 171-229 (639)
41 PLN02837 threonine-tRNA ligase 96.5 0.0055 1.2E-07 72.1 7.5 54 101-170 140-202 (614)
42 PRK14799 thrS threonyl-tRNA sy 96.3 0.0076 1.6E-07 69.7 7.4 45 449-493 73-122 (545)
43 KOG1637|consensus 96.0 0.0031 6.7E-08 69.3 1.7 46 323-371 58-103 (560)
44 TIGR00418 thrS threonyl-tRNA s 95.6 0.021 4.7E-07 66.6 6.8 56 99-170 93-155 (563)
45 PLN02908 threonyl-tRNA synthet 94.1 0.084 1.8E-06 63.1 6.6 59 101-176 218-283 (686)
46 TIGR00644 recJ single-stranded 88.0 5.3 0.00012 46.6 12.7 98 590-696 325-422 (539)
47 PRK14799 thrS threonyl-tRNA sy 80.7 2.4 5.2E-05 49.3 5.5 43 128-170 76-123 (545)
48 COG0497 RecN ATPase involved i 48.8 4.8E+02 0.01 30.7 15.3 59 505-567 307-365 (557)
49 PF06120 Phage_HK97_TLTM: Tail 27.9 3.7E+02 0.0081 29.0 9.5 40 494-536 44-83 (301)
50 COG0441 ThrS Threonyl-tRNA syn 26.7 87 0.0019 37.0 4.9 25 128-153 127-151 (589)
51 PHA02684 ORF066 virion protein 22.9 30 0.00065 33.3 0.2 24 128-151 4-27 (221)
52 PRK11070 ssDNA exonuclease Rec 22.0 1.2E+03 0.027 27.5 13.2 97 591-697 355-455 (575)
53 PRK10869 recombination and rep 20.9 1.4E+03 0.03 26.8 14.3 59 505-567 306-364 (553)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-72 Score=645.52 Aligned_cols=394 Identities=32% Similarity=0.433 Sum_probs=348.3
Q ss_pred HhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCC-CEEEEEecc-cccccCCC
Q psy6230 242 LQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSH-GYSYIEPCV-EICAWTGG 319 (699)
Q Consensus 242 ~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~-g~i~H~~~~-~~~l~~G~ 319 (699)
...++..++|+|+|+||+|+ |||++|+|+|...+ +..|.|.||+ +.+ |.++|.+.. .|.+.+|+
T Consensus 484 ~~~g~~~~vVld~TpFYaEs------GGQ~~D~G~i~~~~---~~~~~V~dvq-----K~~~~~~vH~~~~~~G~l~~gd 549 (879)
T COG0013 484 LNEGQEVYVVLDQTPFYAES------GGQVGDTGYIFGDG---GGRFEVTDVQ-----KVGNGVIVHKGKVESGELKVGD 549 (879)
T ss_pred ccCCceEEEEEecCCccCCC------CCccCceEEEEecC---CcEEEEEEEE-----EcCCceEEEEEeeccCccCCCC
Confidence 33445569999999999999 99999999998752 2589999999 455 899999877 56899999
Q ss_pred eeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCE
Q psy6230 320 RSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPV 399 (699)
Q Consensus 320 ~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V 399 (699)
.|.+.|||+||+.+|+||||||||++|||+++|.|++|+||.++++++||||+|++++|+++|.+||+.+|++|++|+||
T Consensus 550 ~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V 629 (879)
T COG0013 550 EVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPV 629 (879)
T ss_pred EEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeec
Q psy6230 400 YAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIA 479 (699)
Q Consensus 400 ~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~ 479 (699)
.+.++++++|++. |++++|+++|++.||||+||+ +|+++||||||.|||+||.|||+++++++
T Consensus 630 ~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig~----------------~SvElCGGTHv~~Tg~IG~fkI~~e~~i~ 692 (879)
T COG0013 630 KTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIGD----------------FSVELCGGTHVSNTGDIGLFKIISEEGIA 692 (879)
T ss_pred eEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEECC----------------ceeeccCCcccCCccceeeEEEEEecccc
Confidence 9999999999998 999999999999999999997 79999999999999999999999999999
Q ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHH
Q psy6230 480 KGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKS 559 (699)
Q Consensus 480 ~g~~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~ 559 (699)
.|+|||+|+||..|+++++.. .+.+.+++..|+++ .++..++.+ |++++++++|+
T Consensus 693 aGVrRIeavtG~~a~~~~~~~---~~~l~~~a~~lk~~-----~~~~~kv~~-----------------l~~~~k~leke 747 (879)
T COG0013 693 AGVRRIEAVTGEAALEYLQEQ---EDLLKEIASLLKVP-----PELLPKVER-----------------LLEELKELEKE 747 (879)
T ss_pred cCeEEEEEEcCHHHHHHHHHH---HHHHHHHHHHhCCC-----hhHHHHHHH-----------------HHHHHHHHHHH
Confidence 999999999999999988877 56788899999853 444557765 77788889999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEec
Q psy6230 560 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSV 639 (699)
Q Consensus 560 ~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v 639 (699)
+.+++++++......+...++. .+.++.++++..+ .+.|++.|+.+++.|+++.++.++++++.. ++|+.+++++
T Consensus 748 l~~lk~~~~~~~~~~~~~~~~~--~~i~g~~~~~~~~-~~~d~~~Lr~~a~~lk~k~~~~vivl~~~~--~~Kv~~~~~v 822 (879)
T COG0013 748 LERLKKKLAAAELADLLSNAKA--EEIGGVKVLAKEV-DGADMKELREIADDLKKKLGSAVIVLASVA--DGKVSLVVAV 822 (879)
T ss_pred HHHHHHHHHHHHHHhhhhcccc--eeeCCEEEEEEEe-cCCCHHHHHHHHHHHHhhcCCcEEEEEEec--CCeEEEEEEe
Confidence 9888876655443333332211 2367788888888 457999999999999999999888888865 3389999999
Q ss_pred ChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230 640 PKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 640 ~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~l 697 (699)
++++. .+++|++|+++++..+||+|||+++||||+|+++.+++++++.+.+++++.|
T Consensus 823 ~~~~~-~~~~a~~lvk~la~~~gG~GGGr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 823 SKDLT-DKVKAGELVKELAAIVGGKGGGRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred chhhh-cccCHHHHHHHHHHhcCCCCCCchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 86654 4499999999999999999999999999999999999999999999998764
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=5.2e-68 Score=626.65 Aligned_cols=410 Identities=36% Similarity=0.506 Sum_probs=351.5
Q ss_pred ceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecc-cccccCCCeeeeec
Q psy6230 247 HASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCV-EICAWTGGRSEGIP 325 (699)
Q Consensus 247 ~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~-~~~l~~G~~V~~~v 325 (699)
...+++|+|+|||++ ||||+|+|+|...+ ...+.|.+|+ +.+|.++|.+.. .+.+.+|++|.++|
T Consensus 521 ~~~vvLd~T~FYpEg------GGQp~D~G~I~~~~---~~~~~V~dv~-----k~~g~i~H~~~~~~g~l~~G~~V~~~V 586 (936)
T PLN02900 521 EVGIVLDKTSFYAES------GGQIGDTGVLEGSG---GAVVEVSDVQ-----KAGGFVLHIGTVTEGSVSVGDAVTCKV 586 (936)
T ss_pred eEEEEEeCCCCCCCC------CCCCCCEEEEecCC---CCEEEEEEEE-----EECCEEEEEEEeccCCCCCCCEEEEEE
Confidence 457999999999999 99999999997542 1158999999 479999999754 56788999999999
Q ss_pred CCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcC
Q psy6230 326 GSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCS 405 (699)
Q Consensus 326 D~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~ 405 (699)
||+||+.+|++|||+|||++||+++||.++.|.|++++++++||||++++++|++++.+||+.||++|++++||++.+++
T Consensus 587 D~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~ 666 (936)
T PLN02900 587 DYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGDALPVEAKEMP 666 (936)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCc-ccccccccccccccccccEEEEeeeeeccCeEE
Q psy6230 406 LADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMET-SVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRR 484 (699)
Q Consensus 406 ~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~-~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~R 484 (699)
++||++++|++++|+++|++.||||+|++ + |.++||||||.|||+||.|+|++++++++|++|
T Consensus 667 ~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~----------------~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rR 730 (936)
T PLN02900 667 LADAKRINGLRAVFGEKYPDPVRVVSVGG----------------VYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRR 730 (936)
T ss_pred HHHHhhccChHhhcCCCCCCcEEEEEECC----------------ccceeCCCCCcCCccccCceEEEEEEeeecCCeEE
Confidence 99999977999999999999999999987 6 899999999999999999999999999999999
Q ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHH
Q psy6230 485 IVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAE 564 (699)
Q Consensus 485 I~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~ 564 (699)
|+|+||.+|++++++. .+.+.++++.|+++ ..++.+.+..|...++..++|+|...++.+.++++++++++++
T Consensus 731 Ie~v~G~~A~~~~~~~---~~~l~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~l~~e~k~l~ 803 (936)
T PLN02900 731 ITAVTGGAAVEAINAA---DSLERELDSALKVE----GSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQ 803 (936)
T ss_pred EEEEEcHHHHHHHHHH---HHHHHHHHHHhCCC----cccchhhhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 56688888888863 4567788888888888889999988777776666666666666
Q ss_pred HHHHHHHHhhHHHHHHHHHh---hcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecCh
Q psy6230 565 RLQKAAHASKVLDRVKSLVE---ERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPK 641 (699)
Q Consensus 565 k~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~ 641 (699)
+++.....+.+...++.++. ..++ .+++..++.+.+++.|+.+++.++++.++..+++++....++++.+++++++
T Consensus 804 k~~~~l~~~la~~~~~~l~~~~~~~~~-~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~~vvl~~~~~~~~k~~~~~~~~~ 882 (936)
T PLN02900 804 KEAAALRAKLAVAKATELASKALSAGK-SVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPP 882 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEEecCCCCHHHHHHHHHHHHhhcCCceEEEEEecCCCCeEEEEEEECh
Confidence 66554433333333333322 1223 5667777556799999999999998877645555553323568888888888
Q ss_pred hhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHH
Q psy6230 642 EAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYAS 694 (699)
Q Consensus 642 ~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~ 694 (699)
+++.++++|++|+|++++.+||||||++.+|||+++++++++++++.++++++
T Consensus 883 ~~~~~~~~A~~lvk~~~~~~gGkGGG~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 883 GVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred HHhhcCCCHHHHHHHHHHhcCCCCCCcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 88777899999999999999999999999999999999999999999999875
No 3
>KOG0188|consensus
Probab=100.00 E-value=4.7e-68 Score=583.34 Aligned_cols=409 Identities=45% Similarity=0.692 Sum_probs=369.8
Q ss_pred HHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecccccccCCC
Q psy6230 240 ERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGG 319 (699)
Q Consensus 240 ~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~~~~l~~G~ 319 (699)
+...++....+++|+|.||+|+ |||.+|+|.|.+.++ ....|.|..++ .+|+++|.+...+.+.+||
T Consensus 487 ~~~~~g~~~givldktnFYaEq------GGQ~~D~G~lv~~~~-~~~~fnV~~~~------~gg~vvh~g~l~~~l~vgd 553 (895)
T KOG0188|consen 487 ESIPKGQECGIVLDKTNFYAEQ------GGQIYDTGKLVIDGD-EDFVFNVKRVQ------VGGYVVHIGVLEGDLSVGD 553 (895)
T ss_pred eecCCCceEEEEeecceeehhc------CCcccccceEEEecC-ccceeehhhcc------cCCEEEEEeeeccccccch
Confidence 4455677889999999999999 999999999998864 33366666666 4899999998899999999
Q ss_pred eeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCE
Q psy6230 320 RSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPV 399 (699)
Q Consensus 320 ~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V 399 (699)
+|.+.+|.+||..+|++||||||||+|||+++ ....|+||+|.||++||||++.+.+|.+++.++|+.+|++|.++.+|
T Consensus 554 qv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V 632 (895)
T KOG0188|consen 554 QVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPV 632 (895)
T ss_pred hHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999999 35899999999999999999988899999999999999999999999
Q ss_pred EEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeec
Q psy6230 400 YAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIA 479 (699)
Q Consensus 400 ~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~ 479 (699)
+..++++.+|++++|+|++|+|.||++||||++|.. ..+++|+|||||+.|||+||.|.|++.++++
T Consensus 633 ~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~-------------~~~svE~CgGTH~~~t~~i~~fvI~se~~ia 699 (895)
T KOG0188|consen 633 YAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAG-------------QLTSVEFCGGTHLTNTSHIGDFVIVSEEGIA 699 (895)
T ss_pred EEEecCHHHHhcCCCcccccCCccCCceEEEEeccc-------------cccceeecCCcccccccccceEEEechhhhh
Confidence 999999999999999999999999999999999852 3479999999999999999999999999999
Q ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHH
Q psy6230 480 KGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKS 559 (699)
Q Consensus 480 ~g~~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~ 559 (699)
+|+|||.+|||++|.++.+.+. . +.+.+... ...+.+.+.++.+.++...||+|.|+++++.++.++|+
T Consensus 700 kgirRivavTG~eA~~a~~~a~---~----~~~~~~~~----~~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~ 768 (895)
T KOG0188|consen 700 KGIRRIVAVTGKEAQEALRLAE---D----LDKDLRKT----DKALEKEIQELGENLDHAVIPYWQKDEIRELLKKLQKR 768 (895)
T ss_pred hceeEEEEeccHHHHHHHHHHH---H----HHhhhccc----chhhHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHH
Confidence 9999999999999999888763 1 33333322 25567788888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEec
Q psy6230 560 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSV 639 (699)
Q Consensus 560 ~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v 639 (699)
++++.|.+.+...+..+..++++.+..++.+++|+.++.+ ..+++++|+.+++++| +++.+|+.|.|.+
T Consensus 769 ~~d~~ra~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~~gkv~~~c~V 837 (895)
T KOG0188|consen 769 MDDLSRALKAAVQKEVLEEAKQLKESNPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDESGKVTCLCQV 837 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCCCCeEEEEEee
Confidence 9999999998888888988999888888999999999543 4566678999999999 7778899999999
Q ss_pred ChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230 640 PKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 640 ~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~l 697 (699)
|+++.++|++|++|+++++..+|||||||+..+||.|.+...|++|++.|.+|+..+|
T Consensus 838 ~~~a~~~gl~a~~w~q~v~~~~ggk~ggK~~~~q~~g~~~~~l~~av~~a~~~a~~~L 895 (895)
T KOG0188|consen 838 PQNAANKGLKASEWVQSVSGTMGGKGGGKGVLAQATGNNVGCLDEAVSLATEFALLKL 895 (895)
T ss_pred cHHHhhccCCHHHHHHHHHHhhCCccCCccchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999987664
No 4
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=6.8e-67 Score=617.24 Aligned_cols=400 Identities=23% Similarity=0.287 Sum_probs=342.2
Q ss_pred cccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEc
Q psy6230 216 TLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTS 295 (699)
Q Consensus 216 ~i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~ 295 (699)
...|+.+++++++-+++..+. ...++||+|+|||++ ||||+|+|+|..++ ..+.|.+|+
T Consensus 502 ~~l~y~~~~~~e~~a~Vl~i~----------~~~vvLd~T~FYpEg------GGQ~~D~G~I~~~~----~~~~V~dv~- 560 (902)
T TIGR03683 502 RRLFYEDPTMREFEAKVLGVF----------DNYVVLDQTAFYPEG------GGQPADTGYLITNG----GKIRVVDVQ- 560 (902)
T ss_pred eEeccccCccceEEEEEEEEE----------cCEEEEeCCCCCCCC------CCCCCCEEEEEeCC----cEEEEEEEE-
Confidence 356677777766655555443 246999999999999 99999999997543 379999999
Q ss_pred cccccCCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCC
Q psy6230 296 PYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKG 375 (699)
Q Consensus 296 ~~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~ 375 (699)
+.+|.++|.+. .+.+.+|++|.++|||+||+.+|++|||+|||++||+++||.|++|.|++++++++||||++++
T Consensus 561 ----k~~g~i~H~~~-~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 635 (902)
T TIGR03683 561 ----KVGGVIVHKVD-GEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYK 635 (902)
T ss_pred ----EECCEEEEEeC-CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCC
Confidence 57999999975 3347899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhc-CCCCCCCEEEEEeCCCcccccCCcccccCCCcccc
Q psy6230 376 AMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVE 454 (699)
Q Consensus 376 ~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~-~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~ 454 (699)
++|++++.+||+.+|++|++++||++.+++++||++..+++.++ +++|++.||||+|++ +|++
T Consensus 636 ~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~----------------~d~e 699 (902)
T TIGR03683 636 RISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIED----------------WDVQ 699 (902)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECC----------------eeee
Confidence 99999999999999999999999999999999999987766544 356778999999997 6899
Q ss_pred cccccccccccccccEEEEeeeeeccCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q psy6230 455 FCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITE 534 (699)
Q Consensus 455 ~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~ 534 (699)
+||||||.|||+||.|+|++++++++|++||+|+||.+|++++++. .+.+.++++.|+++ ++++.+++++
T Consensus 700 ~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~~~---~~~l~~~a~~L~~~----~~~l~~~v~~--- 769 (902)
T TIGR03683 700 ACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQEL---EDLLRESSDILKVP----PEQLPETVKR--- 769 (902)
T ss_pred CCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHHHH---HHHHHHHHHHhCCC----hHHHHHHHHH---
Confidence 9999999999999999999999999999999999999999998887 67788999999876 7888888876
Q ss_pred HHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHh
Q psy6230 535 EIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKT 614 (699)
Q Consensus 535 ~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~ 614 (699)
|+++++++++++..++++++...++.+...+ ++.++.++++..+ +.|++.|+.+++.+++
T Consensus 770 --------------l~~e~k~l~k~l~~l~~~l~~~~~~~l~~~~----~~i~g~~vi~~~~--~~d~~~lr~la~~l~~ 829 (902)
T TIGR03683 770 --------------FFEEWKEQRKEIERLKKKLAELKIYELISEA----ERIGGVEVIVELV--DADMDELQEIAEKLAE 829 (902)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----eecCCEEEEEEEe--CCCHHHHHHHHHHHhc
Confidence 6778888889998888888777666655433 2356667777666 4689999999999976
Q ss_pred hCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHH
Q psy6230 615 SAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYAS 694 (699)
Q Consensus 615 ~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~ 694 (699)
+ +.++++++.+ ++++.+++++++++ +++|++|++++++.+||||||++.+|||++++.+++++|++.+.++++
T Consensus 830 ~--~~vvvl~~~~--~~k~~~v~~~~~~~---~~~A~~lvk~l~~~lgGkGGGk~~~AQGgg~~~~~l~~al~~~~~~l~ 902 (902)
T TIGR03683 830 K--GLVVVLVSGG--GGNGRVVISSGEKA---GVDAGELVREIAKELGGGGGGKPDLAQGGGPDDLKIDEALEKIKSFLR 902 (902)
T ss_pred C--CcEEEEEEcc--CCcEEEEEEEChhH---hhhHHHHHHHHHHhcCCCcCCchhheeecCCCHHHHHHHHHHHHHHhC
Confidence 5 3455555532 45666777766554 689999999999999999999999999999999999999999988763
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.3e-66 Score=610.94 Aligned_cols=386 Identities=33% Similarity=0.462 Sum_probs=340.8
Q ss_pred eeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccC-CCEEEEEecc-cccccCCCeeeeec
Q psy6230 248 ASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKS-HGYSYIEPCV-EICAWTGGRSEGIP 325 (699)
Q Consensus 248 ~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~-~g~i~H~~~~-~~~l~~G~~V~~~v 325 (699)
..+++|+|+|||++ ||||+|+|+|.. + ..++|.+|+ +. +|.++|.+.. ++.+.+|++|.+.|
T Consensus 478 ~~vvLd~T~FYpeg------GGQ~~D~G~I~~-~----~~~~V~~v~-----~~~~g~i~H~~~~~~~~l~~G~~V~~~I 541 (865)
T PRK00252 478 VEVVLDKTPFYAES------GGQVGDTGVIED-G----GVFEVTDTQ-----KPPNGLIVHRGKVEEGELKVGDEVTAEV 541 (865)
T ss_pred EEEEEeCCCCCCCC------CCCCCCEEEEee-C----cEEEEEEEE-----EccCCEEEEEEEeccCCCCCCCEEEEEE
Confidence 56999999999999 999999999975 3 279999999 45 9999999865 56789999999999
Q ss_pred CCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcC
Q psy6230 326 GSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCS 405 (699)
Q Consensus 326 D~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~ 405 (699)
||+||+.+|++|||+|||++|++++||.++.|.|++++++++||||++++++|++++.+||+.||++|++++||++.+++
T Consensus 542 D~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~ 621 (865)
T PRK00252 542 DEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMS 621 (865)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 99999999999999999999999999988999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEE
Q psy6230 406 LADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 485 (699)
Q Consensus 406 ~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI 485 (699)
++||.+. +++++|+++|++.||||+|++ +|+++||||||+|||+||.|+|++.+++++|++||
T Consensus 622 ~~eA~~~-~~~~~~~~~y~~~VRVV~Ig~----------------~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI 684 (865)
T PRK00252 622 IEEAKKM-GAMALFGEKYGDEVRVVSIGD----------------FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRI 684 (865)
T ss_pred HHHHHhC-CchhhccccCCCeEEEEEECC----------------ceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEE
Confidence 9999986 577778889999999999997 68999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHH
Q psy6230 486 VALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAER 565 (699)
Q Consensus 486 ~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k 565 (699)
+|+||.+|++++.+. .+.+.++++.|+++ ++++.+++.+ +++++++++++++.+++
T Consensus 685 ~~v~G~~A~~~~~~~---~~~l~~~~~~l~~~----~~~l~~~v~~-----------------l~~e~k~l~k~~~~l~~ 740 (865)
T PRK00252 685 EAVTGEAALEYLNEQ---EALLKELAALLKAK----PSELPERVEA-----------------LLEELKELEKELEQLKA 740 (865)
T ss_pred EEEECHHHHHHHHHH---HHHHHHHHHHhCCC----HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999887 57788999999876 8889998876 67778888888888887
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhc
Q psy6230 566 LQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVS 645 (699)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~ 645 (699)
+++...++.+...+. +.++.++++..+ ++.+++.|+.+++.++++.++.++++++ ..++++.+++++++++.+
T Consensus 741 ~l~~~~~~~l~~~~~----~i~~~~~vv~~~-~~~d~~~L~~la~~l~~~~~~~vvll~~--~~~~k~~~vv~v~~~~~~ 813 (865)
T PRK00252 741 KLAAAAAGDLLAQAK----EVNGVKVLAAQV-EGVDAKALRTLADDLKDKLGSGVVVLAT--VEDGKVSLVVAVTKDLTD 813 (865)
T ss_pred HHHHHHhhhhhhhhh----ccCCeEEEEEEe-cCCCHHHHHHHHHHHHhhcCCeEEEEEE--ccCCeEEEEEEEChhHhh
Confidence 777766665554332 245666777777 5678999999999998877664544443 235578888888888777
Q ss_pred cCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230 646 AGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 646 ~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~l 697 (699)
++++|++|++++++.+||||||++.+|||++++.++++++++.+.++++..|
T Consensus 814 ~gl~A~~l~k~l~~~lgGkGGGk~~~AQGgg~~~~~l~~al~~a~~~l~~~~ 865 (865)
T PRK00252 814 KGLKAGDLVKELAKIVGGKGGGRPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865 (865)
T ss_pred cCcCHHHHHHHHHHhcCCCCCCcHHHeeeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 7899999999999999999999999999999999999999999999987654
No 6
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-66 Score=612.81 Aligned_cols=401 Identities=24% Similarity=0.300 Sum_probs=344.2
Q ss_pred cccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEc
Q psy6230 216 TLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTS 295 (699)
Q Consensus 216 ~i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~ 295 (699)
...|+.+++++++-++|..+. ...++||+|+|||++ ||||+|+|+|...+ ..+.|.+|+
T Consensus 498 ~~l~y~~~~~~~~~a~Vl~i~----------~~~vvLD~T~FYpEg------GGQ~~D~G~I~~~~----~~~~V~dv~- 556 (900)
T PRK13902 498 EKLFYEDPYMREFEAKVLGVI----------DNYVVLDQTAFYPEG------GGQPADTGVLIVDG----KGYKVVDVQ- 556 (900)
T ss_pred eEeccccCccceEEEEEEEEE----------cCEEEEeCCCCCCCC------CCCCCCEEEEEeCC----cEEEEEEEE-
Confidence 356677777766666665443 137999999999999 99999999997543 379999999
Q ss_pred cccccCCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCC
Q psy6230 296 PYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKG 375 (699)
Q Consensus 296 ~~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~ 375 (699)
+.+|.++|.+. .+.+.+|++|.++|||+||+++|++|||+|||++||+++||.|++|.|++++++++||||++++
T Consensus 557 ----k~~g~i~H~~~-~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 631 (900)
T PRK13902 557 ----KVGGVIVHVLE-GEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYK 631 (900)
T ss_pred ----EECCEEEEEeC-CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCC
Confidence 58999999974 3444569999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhc-CCCCCCCEEEEEeCCCcccccCCcccccCCCcccc
Q psy6230 376 AMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVE 454 (699)
Q Consensus 376 ~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~-~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~ 454 (699)
++|++++.+||+.+|++|++++||++.+++++||.+..+++.++ +++|++.||||+|++ +|++
T Consensus 632 ~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~----------------~d~e 695 (900)
T PRK13902 632 RITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGD----------------WDVE 695 (900)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECC----------------eeee
Confidence 99999999999999999999999999999999999987776654 467888999999997 6899
Q ss_pred cccccccccccccccEEEEeeeeeccCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q psy6230 455 FCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITE 534 (699)
Q Consensus 455 ~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~ 534 (699)
+||||||.|||+||.|+|++++++++|++||+|+||.+|++++++. .+.+.++++.|+++ ++++.+++++
T Consensus 696 ~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~---~~~l~~~a~~L~~~----~~el~~~v~k--- 765 (900)
T PRK13902 696 ACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQEL---EDLLKEAAEILGVP----PEQLPKTVER--- 765 (900)
T ss_pred CCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHH---HHHHHHHHHHhCCC----hHHHHHHHHH---
Confidence 9999999999999999999999999999999999999999999877 67789999999876 7889998876
Q ss_pred HHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHh
Q psy6230 535 EIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKT 614 (699)
Q Consensus 535 ~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~ 614 (699)
++++++++++++..++++++...++.+...+ ++.++.++++..+ +.|++.|+.+++.+++
T Consensus 766 --------------l~ee~k~l~kei~~l~~~l~~~~~~~l~~~~----~~~~g~~~i~~~~--~~d~~~Lr~~a~~l~~ 825 (900)
T PRK13902 766 --------------FFEEWKEQKKEIEKLRKELAELLASELLSKA----EEVGGVKVVVEEV--DADEDELRKIANELAK 825 (900)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----eEeCCEEEEEEEe--CCCHHHHHHHHHHHHh
Confidence 6778888888888888888777666655433 2356667777666 5689999999999987
Q ss_pred hCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHH
Q psy6230 615 SAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYAS 694 (699)
Q Consensus 615 ~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~ 694 (699)
+.+ . +++++ . +++..+++++++++. ++|++|++++++.+||||||++.+|||++++.++++++++.+.++++
T Consensus 826 ~~~-~-vvl~~-~--~~k~~~v~~~~~~~~---~~a~~lvk~l~~~~gGkGGGk~~~AQGgg~~~~~l~~al~~~~~~l~ 897 (900)
T PRK13902 826 EGK-V-ALVVL-G--NGGGQIVVGVGEDVG---VNAGEIVRELAKVLGGKGGGKPDLAQGGGPDPKKKEEALEAAKEVLK 897 (900)
T ss_pred cCC-e-EEEEE-c--CCcEEEEEEEChhhh---hhHHHHHHHHHHhcCCCCCCchHheeeCCCCHHHHHHHHHHHHHHHH
Confidence 753 3 45555 2 345667777766542 89999999999999999999999999999999999999999999987
Q ss_pred hh
Q psy6230 695 QQ 696 (699)
Q Consensus 695 ~~ 696 (699)
+.
T Consensus 898 ~~ 899 (900)
T PRK13902 898 EA 899 (900)
T ss_pred hc
Confidence 64
No 7
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.6e-64 Score=595.91 Aligned_cols=367 Identities=30% Similarity=0.426 Sum_probs=323.8
Q ss_pred ceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecc-cccccCCCeeeeec
Q psy6230 247 HASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCV-EICAWTGGRSEGIP 325 (699)
Q Consensus 247 ~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~-~~~l~~G~~V~~~v 325 (699)
...+++|+|+|||++ ||||+|+|+|..++ ..++|.+|+ +.+|.++|.+.. .+++.+|++|.+.|
T Consensus 484 ~~~vvLd~T~FYpEg------GGQp~D~G~I~~~~----~~~~V~dv~-----~~~g~i~H~~~~~~g~l~~G~~V~~~V 548 (851)
T TIGR00344 484 SVYVILDQTPFYAES------GGQIGDTGYLIAND----GKFRVVDVQ-----KPNGVVFHFGEVEGGSLKVGDKVIAVI 548 (851)
T ss_pred ceEEEEeCCCCCCCC------CCCCCCEEEEecCC----cEEEEEEEE-----EECCEEEEEEEeccCCCCCCCEEEEEE
Confidence 456999999999999 99999999997432 479999999 479999999754 46789999999999
Q ss_pred CCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcC
Q psy6230 326 GSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCS 405 (699)
Q Consensus 326 D~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~ 405 (699)
||+||+.+|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++.+||+.||++|++++||.+.+++
T Consensus 549 D~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~ 628 (851)
T TIGR00344 549 DEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVIFMD 628 (851)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEE
Q psy6230 406 LADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 485 (699)
Q Consensus 406 ~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI 485 (699)
++||++..+ +++++++|++.||||+|++ +|.++||||||.|||+||.|+|++.+++++|++||
T Consensus 629 ~eeA~~~~~-~~~~~e~y~~~VRVV~Ig~----------------~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RI 691 (851)
T TIGR00344 629 LDEAKAKGA-FALFGEKYGEKVRVVSVGD----------------VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRI 691 (851)
T ss_pred HHHHHhcch-hhhcCCCCCCeEEEEEECC----------------eeccCCCCCccCChhhCeEEEEEEEeEecCCeEEE
Confidence 999999754 4557889999999999997 68999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHH
Q psy6230 486 VALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAER 565 (699)
Q Consensus 486 ~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k 565 (699)
+|+||.+|++++.+. .+.+.++++.|+++ ++++.+++++ |+++++++++++..+++
T Consensus 692 e~v~G~~A~~~~~~~---~~~l~~l~~~L~~~----~~~i~~~v~~-----------------l~~e~k~l~k~~~~l~~ 747 (851)
T TIGR00344 692 EAVTGNAAIEYLNEQ---EDKLKELADILKVT----PNELPKKIER-----------------FFEEWKALQKELESLKL 747 (851)
T ss_pred EEEEcHHHHHHHHHH---HHHHHHHHHHhCCC----HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 999999999998877 67889999999977 7888888876 77788888888888888
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhc
Q psy6230 566 LQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVS 645 (699)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~ 645 (699)
+++...++.+...+ +..++.++++..+ ++.+++.|+.+++.++++.++.++++.+. .++++.+++++++++++
T Consensus 748 ~l~~~~~~~l~~~~----~~~~~~~~i~~~~-~~~d~~~lr~la~~l~~~~~~~vvll~~~--~~~k~~~v~~~~~~~~~ 820 (851)
T TIGR00344 748 KIADQKIDELKDKA----ETINGVKVLVEVV-DAKDMKSLKTMADRLKSKLGSAIYVLASF--ANGKVKLVCGVSNDVLN 820 (851)
T ss_pred HHHHHHHHHHhhhh----hccCCeEEEEEEc-cCCCHHHHHHHHHHHHhhcCCeEEEEEEc--CCCeEEEEEEEChhHhh
Confidence 88766666555433 2356677877777 45589999999999988876655555542 35688888998888877
Q ss_pred cCCCHHHHHHHHHhhcCCCCCCcccCeeecC
Q psy6230 646 AGLTAIDWVRYLTDIMGGKGGGKAESAQASG 676 (699)
Q Consensus 646 ~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~ 676 (699)
++++|++|++++++.+||||||++.+|||+|
T Consensus 821 ~~~~A~~lvk~~~~~~gGkGGG~~~~AQggg 851 (851)
T TIGR00344 821 KGIKAGELINQIAQVLGGKGGGRPDLAQAGG 851 (851)
T ss_pred cCCCHHHHHHHHHHHcCCCCCCcHHhcccCC
Confidence 7899999999999999999999999999975
No 8
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=2.6e-45 Score=371.46 Aligned_cols=233 Identities=26% Similarity=0.294 Sum_probs=210.3
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEcc
Q psy6230 217 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSP 296 (699)
Q Consensus 217 i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~ 296 (699)
..|+.+.|++++.+.+.... ...+++|+|+|||++ ||||+|+|++.+.+. .+.|.++.
T Consensus 4 ~ly~~D~y~~e~~~~v~~v~----------~~~i~ld~T~Fyp~~------GGQp~D~G~l~~~~~----~~~~~~~~-- 61 (241)
T COG2872 4 KLYYDDSYLKEFEATVVDVE----------DNEIVLDRTIFYPTG------GGQPGDTGTLIWAGG----EYVVEDVT-- 61 (241)
T ss_pred ceeccccccccceEEEEEEe----------CCeEEEEeccccCCC------CCCcCCceEEEeCCc----eEEEEEEE--
Confidence 46889999999988776432 338999999999999 999999999998764 88899988
Q ss_pred ccccCCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCC
Q psy6230 297 YHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGA 376 (699)
Q Consensus 297 ~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ 376 (699)
..++.|+|.+.....+.+|++|.++|||+||+.+||+|||+|||++++.+.++ +...|+++++++.|+||+.+.
T Consensus 62 ---~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~- 135 (241)
T COG2872 62 ---KDGEEIVHVLAEHAKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED- 135 (241)
T ss_pred ---ecceEEEEEecCcccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc-
Confidence 46778999986556689999999999999999999999999999999999999 888999999999999999763
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhcCCCCC---CCEEEEEeCCCcccccCCcccccCCCccc
Q psy6230 377 MTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYP---DPVRVVCVGTPVEQLESEPESQAGMETSV 453 (699)
Q Consensus 377 ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~~e~y~---~~VRvV~I~~~~~~l~~~~~~~~~~~~~~ 453 (699)
+++.+.++++.+|++|++|+||...+++.+||.+.|+++++....+| +.+|+|+|++ +|+
T Consensus 136 -~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~d----------------id~ 198 (241)
T COG2872 136 -TEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGD----------------IDV 198 (241)
T ss_pred -chhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECC----------------eec
Confidence 88999999999999999999999999999999999999887654444 4799999997 689
Q ss_pred ccccccccccccccccEEEEeeeeeccCeEEEEEEecHHHH
Q psy6230 454 EFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEAT 494 (699)
Q Consensus 454 ~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v~G~~A~ 494 (699)
+|||||||+||+|||.|+|++.+++++|.+||+|.+|.++.
T Consensus 199 qpCgGtHVk~T~EIG~Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 199 QPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred cCCCCcccCCccceEEEEEEEEEEecCceEEEEEEeccccc
Confidence 99999999999999999999999999999999999999875
No 9
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.5e-42 Score=351.91 Aligned_cols=208 Identities=22% Similarity=0.270 Sum_probs=175.5
Q ss_pred ceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEeccc-------ccccCCC
Q psy6230 247 HASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVE-------ICAWTGG 319 (699)
Q Consensus 247 ~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~~-------~~l~~G~ 319 (699)
...++||+|+|||++ ||||+|+|+|...++ +..++|.+|+ +.+|+++|++... ..+.+|+
T Consensus 2 ~~~viLd~T~FYpeg------GGQp~D~G~i~~~~~--~~~~~V~~v~-----~~~g~i~H~~~~~~~~~~~~~~l~~G~ 68 (223)
T PLN02961 2 RIALVLDRTIFHPQG------GGQPSDTGRIVISGG--DTKFSVQDVR-----RKDGVVYHYGVFEGSNPESASPFEAGD 68 (223)
T ss_pred CeEEEeCCceEcCCC------CCCCCcEEEEEecCC--CcEEEEEEEE-----EECCEEEEEEEecCcccccCCCCCCCC
Confidence 357899999999999 999999999975321 2468999999 5799999997433 3688999
Q ss_pred eeeeecCCcCChHHHHHhHHHHHHHHHHHhH-hCCcccccCccccCCcEEEEEecCCCCCHHH----HHHHHHHHHHHHH
Q psy6230 320 RSEGIPGSARRRPIMSNHTATHILNHALRFV-LGPEADQKGSLVAPDRLRFDFTNKGAMTADQ----VKKAEAEVIRIVQ 394 (699)
Q Consensus 320 ~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v-~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~----l~~IE~~~N~~I~ 394 (699)
+|.++|||+||+.+|++|||+|||++||+++ +|....++|+++ +++.++||. ..++.++ +.+||+.+|++|+
T Consensus 69 ~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~ 145 (223)
T PLN02961 69 EVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIA 145 (223)
T ss_pred EEEEEECHHHHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 786677888875 668889886 4567655 4799999999999
Q ss_pred cCCCEEEEEcCHHHHHhhhchhhhcCCC-CCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEE
Q psy6230 395 TKKPVYAKLCSLADAKKIKGLRAMFDET-YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 473 (699)
Q Consensus 395 ~~~~V~~~~~~~~eA~~~~~l~~~~~e~-y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~ 473 (699)
+++||++.+++++||+++++ +..+... .++.||||+|++ ++.++||||||.||++||.|+|+
T Consensus 146 ~~~~V~~~~~~~~ea~~~~~-~~~~~~~~~~~~vRiV~I~~----------------~d~~~CgGTHv~nT~eig~i~I~ 208 (223)
T PLN02961 146 EGGKVSAAVLPYDEAAELCG-GSLPDYIAKDSTPRIVKIGD----------------SPGCPCGGTHVADVSEITSVKVT 208 (223)
T ss_pred cCCceeEEEeCHHHHHHhcC-CcCCCcCCCCCceEEEEECC----------------CccCccCCcccCchhccccEEEE
Confidence 99999999999999998754 3332211 146799999997 68899999999999999999999
Q ss_pred eeeeeccCeEEEEEE
Q psy6230 474 SEEAIAKGIRRIVAL 488 (699)
Q Consensus 474 ~~~~~~~g~~RI~~v 488 (699)
+.+. ++|.+||+|-
T Consensus 209 ~~~~-~kg~~Rv~~~ 222 (223)
T PLN02961 209 QIRV-KKGVTRVSYT 222 (223)
T ss_pred EEEe-cCCEEEEEEe
Confidence 9874 5899999984
No 10
>KOG2105|consensus
Probab=100.00 E-value=1.8e-39 Score=325.12 Aligned_cols=368 Identities=18% Similarity=0.210 Sum_probs=274.2
Q ss_pred hcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecccccccCCCeeeee
Q psy6230 245 AAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGI 324 (699)
Q Consensus 245 ~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~~~~l~~G~~V~~~ 324 (699)
-....+.++.|..||++ ||||+|.|.+. ...|..|. +.+...-|.. ..++.+|.+|...
T Consensus 41 ieg~~i~lqdtiLfpeg------ggqp~d~gf~~--------~v~V~~Vs-----R~G~~A~H~~--~~~iePGt~V~V~ 99 (415)
T KOG2105|consen 41 IEGYEIELQDTILFPEG------GGQPSDSGFLK--------IVEVSHVS-----RFGLHAKHHV--NDYIEPGTTVEVA 99 (415)
T ss_pred eecceeeeeeeEeccCC------CCCCCcccccc--------ceeEEEee-----ccccchhhcc--CCCCCCCCeEEEE
Confidence 34678999999999999 99999999996 34688877 3555555653 5678999999999
Q ss_pred cCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q psy6230 325 PGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLC 404 (699)
Q Consensus 325 vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~ 404 (699)
|||+||+++||+||++|||++++.+.|. ..+.++.++.-+..+..+.+ ++|.+++..||+.+|+.|...+||.+.+.
T Consensus 100 VD~qkR~D~MQQHsGQHLitAvad~~fK--lkTtSWelG~~~sa~e~~~~-~mTaeqvaaieqsvNe~I~d~~~~~v~E~ 176 (415)
T KOG2105|consen 100 VDEQKRMDYMQQHSGQHLITAVADHLFK--LKTTSWELGRFRSAIELDTP-SMTAEQVAAIEQSVNEKIRDRLPVNVREL 176 (415)
T ss_pred ecHHHHhHHHHHhcchhHHHHHHHhhhc--cceeeeeccceeeccccCCC-CccHHHHHHHHHHHHHHHHhccchheeec
Confidence 9999999999999999999999999998 67777776655555666665 79999999999999999999999999988
Q ss_pred CHHH--HHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCe
Q psy6230 405 SLAD--AKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGI 482 (699)
Q Consensus 405 ~~~e--A~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~ 482 (699)
+.++ ..+..| |-+ .+...+++|+|.|++ .|.++||||||+||++|+.|+|++.++-.+|.
T Consensus 177 sl~d~eVeqVS~-~~~-~D~haG~iRvvnI~~----------------vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~r 238 (415)
T KOG2105|consen 177 SLDDPEVEQVSG-RGL-PDDHAGPIRVVNIEG----------------VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNR 238 (415)
T ss_pred ccCCcchhhccC-CCC-cccccCceEEEeecC----------------ccCCccccccccchhhcceEEEeeccccccCc
Confidence 6554 333322 111 122336899999998 57889999999999999999999999988886
Q ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHH
Q psy6230 483 RRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDE 562 (699)
Q Consensus 483 ~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~ 562 (699)
....|+.|+|..+|.+..+ .....+..+|+|+ .++++++|.+ +++..+.|+|.-..
T Consensus 239 tN~~f~~GnRV~~~mersh---~t~~a~taLLkCg----aed~vEavkk-----------------~qnstk~LqKnn~~ 294 (415)
T KOG2105|consen 239 TNLIFLSGNRVLKWMERSH---GTEKALTALLKCG----AEDHVEAVKK-----------------LQNSTKILQKNNLN 294 (415)
T ss_pred cceEEEeccHHHHHHHHhc---chHHHHHHHHhcc----hHHHHHHHHH-----------------HHHHHHHHhhhhHH
Confidence 7788888999999998884 5567778889988 8889999987 66667777777666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEE-ecCCCeEEEEEecCh
Q psy6230 563 AERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISV-DEAAKKIFCLSSVPK 641 (699)
Q Consensus 563 l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~-~~~~~k~~~~~~v~~ 641 (699)
+-+.++...+..+.... ..++ -++.+.. ..+..+++-+++.+-. .+ .++++.. ++.+|..+++ +.|+
T Consensus 295 ~lr~LA~~iahsL~Ns~-----d~gG-~vi~~~~--e~~sE~~N~ianei~s--~E-tlL~~~~~dek~GgLflL-a~~~ 362 (415)
T KOG2105|consen 295 LLRDLAVHIAHSLRNSP-----DWGG-VVILHRK--EGDSEFMNIIANEIGS--EE-TLLFLTVGDEKGGGLFLL-AGPP 362 (415)
T ss_pred HHHHHHHHHHHHHhcCc-----CcCc-eEEeehh--hccHHHHHHHhhccCC--ee-EEEEEEeeccCCceEEEe-cCCc
Confidence 55555443333332211 1222 3444554 4467777777766532 12 3444444 4444444444 4444
Q ss_pred hhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhh
Q psy6230 642 EAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQ 696 (699)
Q Consensus 642 ~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~ 696 (699)
+ ...++...+++.+.|||||++.-.||..+..++--++.+...+|+..+
T Consensus 363 a------svetLg~rvae~LeG~Ga~K~Gr~QGKaTkmSrrmea~AlLqDYiS~q 411 (415)
T KOG2105|consen 363 A------SVETLGPRVAEVLEGKGAGKKGRFQGKATKMSRRMEAQALLQDYISTQ 411 (415)
T ss_pred h------hhhhhhHHHHHHhhcCCCCcCcccccchhhhhHHHHHHHHHHHHhhcc
Confidence 3 334567789999999999999999999887777666777777776543
No 11
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.1e-30 Score=294.86 Aligned_cols=146 Identities=38% Similarity=0.585 Sum_probs=137.9
Q ss_pred CcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCH
Q psy6230 327 SARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSL 406 (699)
Q Consensus 327 ~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~ 406 (699)
.++|+.+|++|||+|||++||+++||.++.|.|++++++++||||++++++|++++.+||+.||++|++++||++.++++
T Consensus 447 ~d~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~ 526 (594)
T PRK01584 447 ADHSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSL 526 (594)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCH
Confidence 35688999999999999999999999888999999999999999999889999999999999999999999999999999
Q ss_pred HHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEEE
Q psy6230 407 ADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486 (699)
Q Consensus 407 ~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~ 486 (699)
+||++. +..++|+++|++.||||+|++ +|+++||||||.||++||.|+|++++++++|++||+
T Consensus 527 eEA~~~-~~~~lf~e~y~~~VRVV~Igd----------------~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~ 589 (594)
T PRK01584 527 EEAREK-GAMALFGEKYEDIVKVYEIDG----------------FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIR 589 (594)
T ss_pred HHHHhc-chhhhccccCCCcEEEEEECC----------------eeeeCCCCCCCCCcccCceEEEEecccccCCeEEEE
Confidence 999997 456678888999999999997 689999999999999999999999999999999999
Q ss_pred EEe
Q psy6230 487 ALS 489 (699)
Q Consensus 487 ~v~ 489 (699)
++.
T Consensus 590 av~ 592 (594)
T PRK01584 590 AIL 592 (594)
T ss_pred EEe
Confidence 985
No 12
>KOG0188|consensus
Probab=99.96 E-value=1e-29 Score=281.20 Aligned_cols=172 Identities=48% Similarity=0.823 Sum_probs=151.2
Q ss_pred cccccccccccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEE
Q psy6230 82 PDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 161 (699)
Q Consensus 82 ~~~v~~~~gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri 161 (699)
-.+++.++|||++|+|+||||||||+||. |..+|+|||||||+.|||+||.|+|++++++++|+|||
T Consensus 639 l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRi 705 (895)
T KOG0188|consen 639 LAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRI 705 (895)
T ss_pred HHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccccccceEEEechhhhhhceeEE
Confidence 44788999999999999999999999994 66799999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHhHHHHHH
Q psy6230 162 VALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAER 241 (699)
Q Consensus 162 ~~~tg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~eeL~~a~i~~~~K~~Lre~l~~v~K~vd~~~k 241 (699)
+||||.+|.++.+.++.+... +.. .+ +.+++++..+.+.++.+.||||.|+++++.++.++|.+++..|
T Consensus 706 vavTG~eA~~a~~~a~~~~~~-------~~~---~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~~~d~~r 774 (895)
T KOG0188|consen 706 VAVTGKEAQEALRLAEDLDKD-------LRK---TD-KALEKEIQELGENLDHAVIPYWQKDEIRELLKKLQKRMDDLSR 774 (895)
T ss_pred EEeccHHHHHHHHHHHHHHhh-------hcc---cc-hhhHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999632111 111 11 6778999999999999999999999999999999999999999
Q ss_pred HhhhcceeEEeccchhhhhhccCCccceeecCCCcc
Q psy6230 242 LQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSN 277 (699)
Q Consensus 242 ~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i 277 (699)
+.+++....+++.+..+.+.+++.++-..--+....
T Consensus 775 a~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~~~~ 810 (895)
T KOG0188|consen 775 ALKAAVQKEVLEEAKQLKESNPNQPLLVHYIESSKL 810 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCEEEEEecchHH
Confidence 999999999999999999887777776665555433
No 13
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.6e-23 Score=238.75 Aligned_cols=107 Identities=36% Similarity=0.536 Sum_probs=92.0
Q ss_pred cceeeeecccccccccccccCCCCcccccccccccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccc
Q psy6230 58 LNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHL 137 (699)
Q Consensus 58 ~n~~~w~~~~~~~~~~~k~~~~~~~~~v~~~~gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv 137 (699)
.|+++|.+.+|.++.. ..++++.. |++++|||+||+.||||+||+ +|+|+||||||
T Consensus 619 vNe~I~~n~~V~~~~m-------~~~eAk~~-Ga~alfGekY~~~VRVV~ig~----------------~SvElCGGTHv 674 (879)
T COG0013 619 VNEIIRENLPVKTEEM-------DLDEAKAK-GAMALFGEKYGDEVRVVEIGD----------------FSVELCGGTHV 674 (879)
T ss_pred HHHHHHcCCceeEEEc-------cHHHHHHh-ChHhhcCCcCCCeEEEEEECC----------------ceeeccCCccc
Confidence 4677788888775441 13355555 999999999999999999998 89999999999
Q ss_pred cCccceeeEEEEeeeeecCceeEEEEecchhHHHHHHHHHHHHHHHHhhhc
Q psy6230 138 AMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKN 188 (699)
Q Consensus 138 ~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~a~~~~~~~~~~~~~~~~~~~ 188 (699)
.|||+||.|+|+++++++.|||||+|+||..|+++++..+++..+++.+.+
T Consensus 675 ~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk 725 (879)
T COG0013 675 SNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLK 725 (879)
T ss_pred CCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999776666665544
No 14
>PLN02900 alanyl-tRNA synthetase
Probab=99.85 E-value=1.3e-21 Score=232.91 Aligned_cols=157 Identities=38% Similarity=0.568 Sum_probs=128.9
Q ss_pred ceeeeecccccccccccccCCCCcccccccccccccccCCCCCCeEEEEecCCcccccCCcCccccCcc-cccccccccc
Q psy6230 59 NVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMET-SVEFCGGTHL 137 (699)
Q Consensus 59 n~~~w~~~~~~~~~~~k~~~~~~~~~v~~~~gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~-~~e~CgGTHv 137 (699)
|.++|.+.|+.+.. -..+++....|+|+.|+|+|+++||||+||+ + |+|+||||||
T Consensus 651 Ne~I~~n~pV~~~~-------~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~----------------~~d~elCGGTHV 707 (936)
T PLN02900 651 NEWIGDALPVEAKE-------MPLADAKRINGLRAVFGEKYPDPVRVVSVGG----------------VYSMELCGGTHV 707 (936)
T ss_pred HHHHHhCCCeEEEE-------cCHHHHhhccChHhhcCCCCCCcEEEEEECC----------------ccceeCCCCCcC
Confidence 34555555554322 1234566668999999999999999999998 7 9999999999
Q ss_pred cCccceeeEEEEeeeeecCceeEEEEecchhHHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHhhccc
Q psy6230 138 AMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATL 217 (699)
Q Consensus 138 ~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~eeL~~a~i 217 (699)
.||||||.|+|++++++++|+|||+|+||.+|+++++..+.+..+++.+.+. +.+++++++.+|..+|+++.+
T Consensus 708 ~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~-------~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 708 SNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKV-------EGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCC-------Ccccchhhhhhhhhhhccccc
Confidence 9999999999999999999999999999999999999998777777766432 346778899999999999999
Q ss_pred cccchhhHHHHHHHHHHhHHHHHHHhhh
Q psy6230 218 PYWKKEDLRNLLKTMKKSLDEAERLQKA 245 (699)
Q Consensus 218 ~~~~K~~Lre~l~~v~K~vd~~~k~~k~ 245 (699)
|+|...++.+.+.++.+.+.+.++..+.
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~ 808 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAA 808 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888887666555554443
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=1.1e-18 Score=202.17 Aligned_cols=145 Identities=18% Similarity=0.273 Sum_probs=118.9
Q ss_pred HHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhh
Q psy6230 333 IMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKI 412 (699)
Q Consensus 333 ~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~ 412 (699)
.+.+||++|||++|++++||. ....+.+..++++|+||+.+.++|++++.+||+.||++|++++||+...++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~-~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPD-AKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-ceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 467999999999999999985 3445555668999999998778999999999999999999999999999999999986
Q ss_pred hch----hhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeee-------ccC
Q psy6230 413 KGL----RAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKG 481 (699)
Q Consensus 413 ~~l----~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~-------~~g 481 (699)
..- ..++...+++.|||+++++ ..++|+||||+|||+||.|+|++.++. +++
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~-----------------~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~ 148 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGD-----------------FEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQ 148 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECC-----------------EEEECCCCCCCCccCCceeEEEEEcceEECCCCCCcc
Confidence 310 0111122234699999986 247899999999999999999999553 789
Q ss_pred eEEEEEEecHHHHH
Q psy6230 482 IRRIVALSGNEATK 495 (699)
Q Consensus 482 ~~RI~~v~G~~A~~ 495 (699)
++||++++-+...+
T Consensus 149 l~Ri~g~~~~~~~~ 162 (575)
T PRK12305 149 LQRIYGTAWETKEE 162 (575)
T ss_pred eEEEEEEecCCHHH
Confidence 99999988776543
No 16
>PLN02837 threonine-tRNA ligase
Probab=99.78 E-value=3.2e-18 Score=198.58 Aligned_cols=154 Identities=18% Similarity=0.330 Sum_probs=129.3
Q ss_pred CeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy6230 319 GRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKP 398 (699)
Q Consensus 319 ~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~ 398 (699)
.+|.+..|...|...+.+||++|||++|++++||....+.|..+ ++++|+||+. .++|++++.+||+.||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999999999999986445566654 6889999997 589999999999999999999999
Q ss_pred EEEEEcCHHHHHhhhchhhhcCCCC---------CCCEEEEEeCCCcccccCCcccccCCCccccccccccccccccc--
Q psy6230 399 VYAKLCSLADAKKIKGLRAMFDETY---------PDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHV-- 467 (699)
Q Consensus 399 V~~~~~~~~eA~~~~~l~~~~~e~y---------~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eI-- 467 (699)
|+..+++++||.++ +.. .++.| .+.|||++|++ .+.++|+||||+|||+|
T Consensus 108 I~~~~v~~eEA~~~--f~~-~~~~~k~~Ll~~~~~~~Iriy~ig~----------------~~~D~c~GpHv~sTg~I~~ 168 (614)
T PLN02837 108 LVREEVSREEAQKR--IMA-INEPYKLEILEGIKEEPITIYHIGE----------------EWWDLCAGPHVERTGKINK 168 (614)
T ss_pred EEEEEecHHHHHHH--HHH-cCCchhHHHhccCCCCeEEEEEECC----------------eEEEecCCCCccccccccc
Confidence 99999999999986 322 11222 24699999986 25678999999999999
Q ss_pred ccEEEEeeeee-------ccCeEEEEEEecHHH
Q psy6230 468 GDFCISSEEAI-------AKGIRRIVALSGNEA 493 (699)
Q Consensus 468 g~~kI~~~~~~-------~~g~~RI~~v~G~~A 493 (699)
+.|+|++.++. .....||+.++-+..
T Consensus 169 ~~~kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~ 201 (614)
T PLN02837 169 KAVELESVAGAYWRGDEKNQMLQRIYGTAWESE 201 (614)
T ss_pred ceEEEEEeehhhhcccccCcceEEEEEEecCCH
Confidence 99999998872 245689999987764
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.77 E-value=1e-17 Score=196.49 Aligned_cols=163 Identities=18% Similarity=0.303 Sum_probs=133.9
Q ss_pred cccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHH
Q psy6230 312 EICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIR 391 (699)
Q Consensus 312 ~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~ 391 (699)
...+..+..|+..-....+-..+.+||++|||++|++++||. ....+.+..++++|+||+.+.++|++++.+||+.||+
T Consensus 48 ~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~-~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~ 126 (638)
T PRK00413 48 STPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPD-AKLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKE 126 (638)
T ss_pred CccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCC-ceEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345566778887777777888889999999999999999984 4445555668999999998778999999999999999
Q ss_pred HHHcCCCEEEEEcCHHHHHhhhchhhhcCCCC--------C--CCEEEEEeCCCcccccCCcccccCCCccccccccccc
Q psy6230 392 IVQTKKPVYAKLCSLADAKKIKGLRAMFDETY--------P--DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHL 461 (699)
Q Consensus 392 ~I~~~~~V~~~~~~~~eA~~~~~l~~~~~e~y--------~--~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV 461 (699)
+|++++||+..+++++||.++ ++.. ++.| + +.||++++++ ..++|+||||
T Consensus 127 iI~~~~pi~~~~v~~~eA~~~--f~~~-~~~~k~~ll~~~~~~~~v~iy~~~~-----------------~~d~c~G~hv 186 (638)
T PRK00413 127 IIKENYPIEREVVSREEAIEL--FKDR-GEPYKVELIEEIPEDEEISLYRQGE-----------------FVDLCRGPHV 186 (638)
T ss_pred HHhcCCCEEEEEecHHHHHHH--HHhc-CCccHHHHhhcCCCCCeEEEEEECC-----------------EEEECCCCCC
Confidence 999999999999999999986 2221 1111 2 2689999986 3578999999
Q ss_pred ccccccccEEEEeeeee-------ccCeEEEEEEecHHHHH
Q psy6230 462 AMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEATK 495 (699)
Q Consensus 462 ~nT~eIg~~kI~~~~~~-------~~g~~RI~~v~G~~A~~ 495 (699)
+|||+|+.|+|++.++. +++.+||+.++-+...+
T Consensus 187 ~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~ 227 (638)
T PRK00413 187 PSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKE 227 (638)
T ss_pred CcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHH
Confidence 99999999999998553 68999999988877644
No 18
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.74 E-value=9.4e-18 Score=199.97 Aligned_cols=108 Identities=27% Similarity=0.397 Sum_probs=85.0
Q ss_pred ccccccccccccc-cCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEE
Q psy6230 83 DQVYLIPGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 161 (699)
Q Consensus 83 ~~v~~~~gl~~~~-~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri 161 (699)
+++....+++... +++|+++||||+||+ +|+|+||||||.||||||.|+|++++++++|+|||
T Consensus 663 ~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~----------------~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RI 726 (900)
T PRK13902 663 NEAEQKYGFRLYQGGVPPGKTIRVVEIGD----------------WDVEACGGTHVSNTGEIGPIKILKTERIQDGVERL 726 (900)
T ss_pred HHHHhccchhhhccCCCCCCeEEEEEECC----------------eeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEE
Confidence 3444555555433 688999999999998 89999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHHh
Q psy6230 162 VALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIA 213 (699)
Q Consensus 162 ~~~tg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~eeL~ 213 (699)
+|+||.+|+++++..+++..+++++ ++.+ ..++..++..+.+++.
T Consensus 727 e~v~G~~A~~~~~~~~~~l~~~a~~---L~~~----~~el~~~v~kl~ee~k 771 (900)
T PRK13902 727 EFAAGDAAVEYIQELEDLLKEAAEI---LGVP----PEQLPKTVERFFEEWK 771 (900)
T ss_pred EEEEChHHHHHHHHHHHHHHHHHHH---hCCC----hHHHHHHHHHHHHHHH
Confidence 9999999999999987666666655 4432 2344555555555443
No 19
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.73 E-value=4.3e-18 Score=202.89 Aligned_cols=105 Identities=26% Similarity=0.345 Sum_probs=82.6
Q ss_pred cccccccccccc-cCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEE
Q psy6230 84 QVYLIPGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 162 (699)
Q Consensus 84 ~v~~~~gl~~~~-~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~ 162 (699)
++....+++... ++.|+++||||+||+ +|+|+||||||.||||||.|+|++++++++|+|||+
T Consensus 668 eA~~~~~~~l~~~~~~~~~~VRVV~Ig~----------------~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe 731 (902)
T TIGR03683 668 EAEQKYGFRLYQGGVPPGREIRVVEIED----------------WDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIE 731 (902)
T ss_pred HHHhcCchhhhccCCCCCCeEEEEEECC----------------eeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEE
Confidence 444444544333 578889999999998 899999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHH
Q psy6230 163 ALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEE 211 (699)
Q Consensus 163 ~~tg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~ee 211 (699)
|+||.+|+++++..+++..+++++ ++.+ ..++..++..+.++
T Consensus 732 ~v~G~~A~~~~~~~~~~l~~~a~~---L~~~----~~~l~~~v~~l~~e 773 (902)
T TIGR03683 732 FAAGEAALEYIQELEDLLRESSDI---LKVP----PEQLPETVKRFFEE 773 (902)
T ss_pred EEEChHHHHHHHHHHHHHHHHHHH---hCCC----hHHHHHHHHHHHHH
Confidence 999999999999997766666655 4432 23444455555544
No 20
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.73 E-value=4.7e-18 Score=202.88 Aligned_cols=101 Identities=36% Similarity=0.626 Sum_probs=83.9
Q ss_pred ccccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecchh
Q psy6230 89 PGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNE 168 (699)
Q Consensus 89 ~gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~ 168 (699)
.|+++.|+++|+++||||+||+ +|+++||||||.||||||.|+|++++++++|+|||+|+||.+
T Consensus 628 ~~~~~~~~~~y~~~VRVV~Ig~----------------~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~ 691 (865)
T PRK00252 628 MGAMALFGEKYGDEVRVVSIGD----------------FSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEA 691 (865)
T ss_pred CCchhhccccCCCeEEEEEECC----------------ceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHH
Confidence 3678899999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHHH
Q psy6230 169 ATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEI 212 (699)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~eeL 212 (699)
|+++++..+.+..+++++ ++.+ ..++..++..+.+++
T Consensus 692 A~~~~~~~~~~l~~~~~~---l~~~----~~~l~~~v~~l~~e~ 728 (865)
T PRK00252 692 ALEYLNEQEALLKELAAL---LKAK----PSELPERVEALLEEL 728 (865)
T ss_pred HHHHHHHHHHHHHHHHHH---hCCC----HHHHHHHHHHHHHHH
Confidence 999999987766666555 4432 234444455544443
No 21
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.72 E-value=6e-18 Score=201.15 Aligned_cols=81 Identities=42% Similarity=0.675 Sum_probs=72.9
Q ss_pred cccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecchhH
Q psy6230 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEA 169 (699)
Q Consensus 90 gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~a 169 (699)
+.++.|+++|+++||||+||+ +|+++||||||.||||||.|+|++++++++|+|||+|+||.+|
T Consensus 636 ~~~~~~~e~y~~~VRVV~Ig~----------------~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A 699 (851)
T TIGR00344 636 GAFALFGEKYGEKVRVVSVGD----------------VSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAA 699 (851)
T ss_pred chhhhcCCCCCCeEEEEEECC----------------eeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHH
Confidence 445679999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy6230 170 TKAIKKAQVIETEVLNV 186 (699)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (699)
+++++..+....++..+
T Consensus 700 ~~~~~~~~~~l~~l~~~ 716 (851)
T TIGR00344 700 IEYLNEQEDKLKELADI 716 (851)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999886655555443
No 22
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=2.5e-16 Score=184.44 Aligned_cols=142 Identities=18% Similarity=0.322 Sum_probs=116.2
Q ss_pred HHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhh
Q psy6230 333 IMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKI 412 (699)
Q Consensus 333 ~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~ 412 (699)
...+||++|||++|++++||......|.. .++++|+||+.+.++|++++.+||+.||++|.+++||+..+++++||.++
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~-~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGPV-IENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCc-CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 45799999999999999999633344444 48999999998778999999999999999999999999999999999986
Q ss_pred hchhh--------hcCCCCC-CCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeee-----
Q psy6230 413 KGLRA--------MFDETYP-DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI----- 478 (699)
Q Consensus 413 ~~l~~--------~~~e~y~-~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~----- 478 (699)
. .. ++..... +.||++++++ ..+.|+||||+|||+|+.|+|++.++.
T Consensus 152 F--~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~ 212 (639)
T PRK12444 152 F--QEMNDRLKLELLEAIPSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGD 212 (639)
T ss_pred H--hhcCCchHHHHHhcCCCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCC
Confidence 2 21 1111111 3589999986 467899999999999999999998874
Q ss_pred --ccCeEEEEEEecHHHH
Q psy6230 479 --AKGIRRIVALSGNEAT 494 (699)
Q Consensus 479 --~~g~~RI~~v~G~~A~ 494 (699)
.++.+||+.++=+.-.
T Consensus 213 ~~~~~l~Ri~g~a~~~~~ 230 (639)
T PRK12444 213 SNNQVLQRIYGVAFSSQK 230 (639)
T ss_pred CCCcceEEEEEEecCCHH
Confidence 5789999998866543
No 23
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.61 E-value=4.5e-15 Score=171.77 Aligned_cols=137 Identities=22% Similarity=0.312 Sum_probs=115.8
Q ss_pred HhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhch
Q psy6230 336 NHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGL 415 (699)
Q Consensus 336 ~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l 415 (699)
+||++|||++|++++||....+.|+.+ ++++|+||+.+.++|++++.+||+.||++|.+++||....++++||.++ +
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~--f 77 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEA--F 77 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHH--H
Confidence 699999999999999986666777777 6679999998778999999999999999999999999999999999986 3
Q ss_pred hhhcCCC----------CCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeee-------
Q psy6230 416 RAMFDET----------YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI------- 478 (699)
Q Consensus 416 ~~~~~e~----------y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~------- 478 (699)
. ++.. +.+.|+++.+++ ++.+.|.||||+|||.|+.|+|.+...-
T Consensus 78 ~--~~~~~k~~Ll~~~~~~~~v~vy~~g~----------------~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~ 139 (563)
T TIGR00418 78 K--VLEPYKLELLDEIPNGVKRTPYGWGK----------------AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSK 139 (563)
T ss_pred h--ccChhHHHHHhcCCCCCeEEEEEeCC----------------EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCC
Confidence 2 2222 235799999986 4789999999999999999999987762
Q ss_pred ccCeEEEEEEecHHH
Q psy6230 479 AKGIRRIVALSGNEA 493 (699)
Q Consensus 479 ~~g~~RI~~v~G~~A 493 (699)
..-++||+.++-+..
T Consensus 140 ~~~l~Ri~g~~~~~~ 154 (563)
T TIGR00418 140 NKMLQRIYGTAWADK 154 (563)
T ss_pred CCceEeeeeccCCCH
Confidence 346789999886554
No 24
>PLN02908 threonyl-tRNA synthetase
Probab=99.55 E-value=1.1e-13 Score=163.04 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=122.5
Q ss_pred cccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccC-CcEEEEEecC-CCCCHHHHHHHHHHH
Q psy6230 312 EICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAP-DRLRFDFTNK-GAMTADQVKKAEAEV 389 (699)
Q Consensus 312 ~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~-~~~r~Df~~~-~~ls~~~l~~IE~~~ 389 (699)
..++..+.+++..=-.+.--.-+.+||++|||..|++++||.. ...|.++++ ++||+||..+ .++|++++.+||+.|
T Consensus 99 ~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m 177 (686)
T PLN02908 99 TRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARA 177 (686)
T ss_pred CccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHH
Confidence 3344444445432112223455689999999999999999743 345666654 8999999854 479999999999999
Q ss_pred HHHHHcCCCEEEEEcCHHHHHhhhc---hh-hhcCCCCC--CCEEEEEeCCCcccccCCcccccCCCccccccccccccc
Q psy6230 390 IRIVQTKKPVYAKLCSLADAKKIKG---LR-AMFDETYP--DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAM 463 (699)
Q Consensus 390 N~~I~~~~~V~~~~~~~~eA~~~~~---l~-~~~~e~y~--~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~n 463 (699)
+++|++++||+...++++||.++.. +. .+.. ..+ +.|+|+++|+ .+++|.||||+|
T Consensus 178 ~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~-~~~~~~~v~vY~~g~-----------------~~D~c~Gphv~s 239 (686)
T PLN02908 178 EKAVKEKQPFERIEVTREEALEMFSENKFKVEIIN-DLPEDATITVYRCGP-----------------LVDLCRGPHIPN 239 (686)
T ss_pred HHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHh-hCCCCCeeEEEEECC-----------------EEEecCCCCCCC
Confidence 9999999999999999999998621 00 0011 112 3578888876 467899999999
Q ss_pred ccccccEEEEeeeee-------ccCeEEEEEEecHHHHH
Q psy6230 464 AHHVGDFCISSEEAI-------AKGIRRIVALSGNEATK 495 (699)
Q Consensus 464 T~eIg~~kI~~~~~~-------~~g~~RI~~v~G~~A~~ 495 (699)
||.|+.|+|++.++. ....+||+.++=+....
T Consensus 240 Tg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~ 278 (686)
T PLN02908 240 TSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPDKKL 278 (686)
T ss_pred CCccceeEEEEecceEEcCCCcchhhEEEeeeccCChHH
Confidence 999999999998852 24668999999888654
No 25
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.54 E-value=7.2e-15 Score=111.21 Aligned_cols=44 Identities=45% Similarity=0.795 Sum_probs=38.7
Q ss_pred eEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEE
Q psy6230 103 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 162 (699)
Q Consensus 103 vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~ 162 (699)
||||+||+ +|+++||||||.|||+||.|+|++.++.++|++||+
T Consensus 1 vRvv~i~~----------------~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD----------------FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETT----------------TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECC----------------eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 79999998 899999999999999999999999999999999996
No 26
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.48 E-value=1.5e-14 Score=164.50 Aligned_cols=60 Identities=38% Similarity=0.642 Sum_probs=57.1
Q ss_pred cccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEec
Q psy6230 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALS 165 (699)
Q Consensus 90 gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~t 165 (699)
+.+++|+++|+++||||+||+ +|+++||||||.|||+||.|+|++++++++|+|||+|++
T Consensus 533 ~~~~lf~e~y~~~VRVV~Igd----------------~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 533 GAMALFGEKYEDIVKVYEIDG----------------FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred chhhhccccCCCcEEEEEECC----------------eeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 457789999999999999998 899999999999999999999999999999999999986
No 27
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.43 E-value=1.9e-13 Score=103.42 Aligned_cols=44 Identities=45% Similarity=0.795 Sum_probs=37.9
Q ss_pred EEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEEE
Q psy6230 427 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486 (699)
Q Consensus 427 VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~ 486 (699)
||||+|++ ++.++||||||+||++||.|+|++.++.++|++|||
T Consensus 1 vRvv~i~~----------------~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGD----------------FDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETT----------------TEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECC----------------eeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 79999987 689999999999999999999999999999999997
No 28
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.7e-13 Score=152.21 Aligned_cols=139 Identities=20% Similarity=0.331 Sum_probs=112.8
Q ss_pred HHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHh
Q psy6230 332 PIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKK 411 (699)
Q Consensus 332 ~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~ 411 (699)
.-..+||++|||..|+.++|+. ...| .+-+++|++||+...++|++++.+||+.|++++.++++|....+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 3456999999999999999995 5566 456899999999987899999999999999999999999999999999988
Q ss_pred hhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeee-------ccCeEE
Q psy6230 412 IKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRR 484 (699)
Q Consensus 412 ~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~-------~~g~~R 484 (699)
. |+ .|. +.+++-.+ .|.+.|.++...++|.||||++|+.| .|++++.++- +....|
T Consensus 103 ~------f~-~yK--~~~i~~~~-------~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~r 165 (589)
T COG0441 103 P------FG-PYK--AELIDCKG-------HPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQR 165 (589)
T ss_pred H------hh-hhH--HHHHhcCC-------CCceeEecCccccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeE
Confidence 6 33 343 23332111 34566777778999999999999999 9999998853 345578
Q ss_pred EEEEec
Q psy6230 485 IVALSG 490 (699)
Q Consensus 485 I~~v~G 490 (699)
|+..+-
T Consensus 166 iygta~ 171 (589)
T COG0441 166 IYGTAF 171 (589)
T ss_pred Eecccc
Confidence 887766
No 29
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.39 E-value=3.2e-13 Score=137.85 Aligned_cols=73 Identities=32% Similarity=0.556 Sum_probs=65.6
Q ss_pred cccccccccccccccCCCCC---CeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCce
Q psy6230 82 PDQVYLIPGLRAMFDETYPD---PVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGI 158 (699)
Q Consensus 82 ~~~v~~~~gl~~~~~e~y~~---~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~ 158 (699)
+++....|+++++-.+.+|+ .+|+|+|++ +|+++||||||+||+|||.|+|++.++.++|.
T Consensus 164 ~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~d----------------id~qpCgGtHVk~T~EIG~Iki~k~e~k~k~~ 227 (241)
T COG2872 164 REEAEKLPGLVKLKNKVPPDVEGKIRIVEIGD----------------IDVQPCGGTHVKNTGEIGEIKILKTEKKGKGN 227 (241)
T ss_pred HHHHhhCcChhhhcccCCccccceEEEEEECC----------------eeccCCCCcccCCccceEEEEEEEEEEecCce
Confidence 45777888988877755554 599999998 89999999999999999999999999999999
Q ss_pred eEEEEecchhHH
Q psy6230 159 RRIVALSGNEAT 170 (699)
Q Consensus 159 ~Ri~~~tg~~a~ 170 (699)
+||+|.+|++|.
T Consensus 228 ~Rv~f~~~~~~~ 239 (241)
T COG2872 228 RRVYFTLGERAS 239 (241)
T ss_pred EEEEEEeccccc
Confidence 999999999875
No 30
>PLN02961 alanine-tRNA ligase
Probab=99.27 E-value=2.8e-12 Score=131.22 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=44.0
Q ss_pred CCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEe
Q psy6230 100 PDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVAL 164 (699)
Q Consensus 100 ~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~ 164 (699)
+++||||+|++ +|.++||||||.||+|||.|+|++.+ +.+|.+||+|.
T Consensus 175 ~~~vRiV~I~~----------------~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~~~ 222 (223)
T PLN02961 175 DSTPRIVKIGD----------------SPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVSYT 222 (223)
T ss_pred CCceEEEEECC----------------CccCccCCcccCchhccccEEEEEEE-ecCCEEEEEEe
Confidence 57899999997 89999999999999999999999986 56999999984
No 31
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.26 E-value=3.8e-12 Score=96.45 Aligned_cols=44 Identities=43% Similarity=0.706 Sum_probs=41.6
Q ss_pred eEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEE
Q psy6230 103 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 162 (699)
Q Consensus 103 vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~ 162 (699)
||||.||+ +|.++||||||.||++||.|+|++.++..++.+||+
T Consensus 1 vriv~i~~----------------~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD----------------FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECC----------------EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 69999998 899999999999999999999999999999988984
No 32
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.15 E-value=2.9e-11 Score=91.56 Aligned_cols=44 Identities=43% Similarity=0.706 Sum_probs=40.4
Q ss_pred EEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEEE
Q psy6230 427 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486 (699)
Q Consensus 427 VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~ 486 (699)
||+|.|++ +|.++||||||.||++||.|+|++.++.+.+.+||+
T Consensus 1 vriv~i~~----------------~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGD----------------FDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECC----------------EEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 58999997 689999999999999999999999999888888984
No 33
>KOG2105|consensus
Probab=99.04 E-value=5.2e-10 Score=113.85 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=65.5
Q ss_pred CeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecchhHHHHHHHHHHHHH
Q psy6230 102 PVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIET 181 (699)
Q Consensus 102 ~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~a~~~~~~~~~~~~ 181 (699)
|+|||.|++ +|.++||||||+|+++|+.|+|++.++-.+|-.-+.|+.|.|..+++++.+..+.
T Consensus 198 ~iRvvnI~~----------------vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mersh~t~~ 261 (415)
T KOG2105|consen 198 PIRVVNIEG----------------VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEK 261 (415)
T ss_pred ceEEEeecC----------------ccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHhcchHH
Confidence 799999998 8999999999999999999999999999999778999999999999999998888
Q ss_pred HHHhhhc
Q psy6230 182 EVLNVKN 188 (699)
Q Consensus 182 ~~~~~~~ 188 (699)
.+..+.+
T Consensus 262 a~taLLk 268 (415)
T KOG2105|consen 262 ALTALLK 268 (415)
T ss_pred HHHHHHh
Confidence 8777743
No 34
>KOG2571|consensus
Probab=98.82 E-value=1.4e-09 Score=126.82 Aligned_cols=59 Identities=25% Similarity=0.456 Sum_probs=52.4
Q ss_pred ceeeeeeeccccccchhhhhhhhhhHhhhhhhHHHHHHHHhhcccceeeeecccccccc
Q psy6230 14 TYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKK 72 (699)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~~~w~~~~~~~~~ 72 (699)
++..-++++.++||.||++|+||++|+|++|++|++|+||++||+||+||||.+.+.+.
T Consensus 722 ~~g~~~f~~ii~s~~ef~~l~~~v~Yil~lP~~~~vL~iyA~~n~~d~SWG~~~~~~e~ 780 (862)
T KOG2571|consen 722 LLGTSGFIAIIISPLEFHMLTPGVVYILLLPSWYFVLPIYAFCNFHDVSWGTKGREFEA 780 (862)
T ss_pred HhccceeeEEEecccchHhHHHHHHHHHHhHHHHhhhhheeeEEecccccCCCcccccc
Confidence 34556778999999999999999999999999999999999999999999977655544
No 35
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=98.78 E-value=3e-09 Score=122.20 Aligned_cols=70 Identities=19% Similarity=-0.005 Sum_probs=51.7
Q ss_pred hcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecc-cccccCCCeeee
Q psy6230 245 AAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCV-EICAWTGGRSEG 323 (699)
Q Consensus 245 ~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~-~~~l~~G~~V~~ 323 (699)
.....++||+|+|||++ |||++|+|+|...+ ..+.|.+|+ +.+|+++|.+.. .+.+.+|+.|.+
T Consensus 482 ~~~~~VVLD~T~FYpeg------GGQ~~D~G~I~~~~----~~~~V~dv~-----k~~g~i~H~~~~~~g~l~~G~~V~~ 546 (552)
T PF01411_consen 482 GEEGYVVLDKTPFYPEG------GGQPGDTGTIIGDG----GEFEVTDVQ-----KVGGVILHIGEVESGSLKVGDEVTA 546 (552)
T ss_dssp EETTEEEESEE-S--SB------TTB----EEECCTT----EEEEEEEEE-----EETTEEEEEESSG-GG--TTSEEEE
T ss_pred CceEEEEECCccccCCC------CCCCCCeEEEeecc----eEEEEEEEE-----EECCEEEEEEeccCCCCCCCCEEEE
Confidence 34568999999999999 99999999998653 589999999 578999999976 478999999999
Q ss_pred ecCCcC
Q psy6230 324 IPGSAR 329 (699)
Q Consensus 324 ~vD~~r 329 (699)
+|||+|
T Consensus 547 ~VD~eR 552 (552)
T PF01411_consen 547 EVDWER 552 (552)
T ss_dssp EE-HHH
T ss_pred EecCCC
Confidence 999986
No 36
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.10 E-value=2.2e-06 Score=99.85 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeee-------cCceeEEEEecchhHHH
Q psy6230 99 YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEATK 171 (699)
Q Consensus 99 y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~-------~~g~~Ri~~~tg~~a~~ 171 (699)
+++.||||++|+ + +++||||||.|||+||.|+|++.++. +++.+||++++=+...+
T Consensus 100 ~~~~vri~~ig~----------------~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~~~~ 162 (575)
T PRK12305 100 PEEGITIYDNGD----------------F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWETKEE 162 (575)
T ss_pred CCCeEEEEEECC----------------E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCCHHH
Confidence 345799999997 3 36799999999999999999998554 78999999976555443
No 37
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=98.07 E-value=5.8e-06 Score=68.32 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=52.6
Q ss_pred eEEEEEEEecCCCeEEEEEecChhhhccCCCHH-HHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHH
Q psy6230 619 MAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAI-DWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARD 691 (699)
Q Consensus 619 ~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~-~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~ 691 (699)
.++++++.. ++++.+.+.+++ +++.. +|+++++..++|+|||.+.+|||+++...+++++++.+++
T Consensus 2 ~~~i~~~~~--~~~~~~s~rs~~-----~~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 2 KPVIVFSEE--DGKIKVSARSSK-----GVDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp SEEEEEEEE--SSTEEEEEEESS-----SSTHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHHHHHHH
T ss_pred eEEEEEEEc--CCEEEEEEEECC-----chhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHHHHhcC
Confidence 356677643 457777777543 46666 9999999999999999999999999888878988887754
No 38
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.95 E-value=3.1e-06 Score=96.13 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=49.9
Q ss_pred eeeeeccccccchhhhhhhhhhHhhhhhhHHHHHHHHhhcccceeeeecccccccc
Q psy6230 17 QVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKK 72 (699)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~~~w~~~~~~~~~ 72 (699)
|++.+..++|..+|.++.++++|++++|+++++|++||++|++|+|||+....+.+
T Consensus 443 GL~aIl~iL~~r~wq~i~wmiiYll~~P~~n~vLpiYSfwn~DDFSWGtTR~v~ge 498 (527)
T PF03142_consen 443 GLPAILFILRSRRWQYIGWMIIYLLALPFFNFVLPIYSFWNFDDFSWGTTRVVVGE 498 (527)
T ss_pred HHHhhhheecccHHHHHHHHHHHHHHHHHHHhHhhheeEEEecccccCCeeeeccc
Confidence 56666678899999999999999999999999999999999999999997765544
No 39
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.53 E-value=0.00014 Score=85.86 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=47.8
Q ss_pred CeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeee-------cCceeEEEEecchhHHHHHH
Q psy6230 102 PVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEATKAIK 174 (699)
Q Consensus 102 ~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~-------~~g~~Ri~~~tg~~a~~~~~ 174 (699)
.|||+.+|+ + +++||||||.|||+|+.|+|++.++. .++.+||..++-+...+...
T Consensus 168 ~v~iy~~~~----------------~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~ 230 (638)
T PRK00413 168 EISLYRQGE----------------F-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDA 230 (638)
T ss_pred eEEEEEECC----------------E-EEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHH
Confidence 699999997 2 47899999999999999999999654 78999999987777654444
Q ss_pred HH
Q psy6230 175 KA 176 (699)
Q Consensus 175 ~~ 176 (699)
..
T Consensus 231 ~~ 232 (638)
T PRK00413 231 YL 232 (638)
T ss_pred HH
Confidence 33
No 40
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.21 E-value=0.00064 Score=80.41 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeee-------cCceeEEEEecchhH
Q psy6230 101 DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEA 169 (699)
Q Consensus 101 ~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~-------~~g~~Ri~~~tg~~a 169 (699)
+.|||+.+|+ .++.|+||||.|||+|+.|+|++..+. .++.+||..++=+.-
T Consensus 171 ~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~ 229 (639)
T PRK12444 171 ESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQ 229 (639)
T ss_pred CeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCCH
Confidence 3599999986 356799999999999999999988876 689999999664433
No 41
>PLN02837 threonine-tRNA ligase
Probab=96.48 E-value=0.0055 Score=72.11 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCeEEEEecCCcccccCCcCccccCcccccccccccccCccce--eeEEEEeeeee-------cCceeEEEEecchhHH
Q psy6230 101 DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHV--GDFCISSEEAI-------AKGIRRIVALSGNEAT 170 (699)
Q Consensus 101 ~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i--~~~~i~~~~~~-------~~g~~Ri~~~tg~~a~ 170 (699)
++|||++||+ .....||||||.|||+| +.|+|++..+- ..-..||..++=+.-.
T Consensus 140 ~~Iriy~ig~----------------~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~~~~l~ri~g~~~~~~~ 202 (614)
T PLN02837 140 EPITIYHIGE----------------EWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEKNQMLQRIYGTAWESEE 202 (614)
T ss_pred CeEEEEEECC----------------eEEEecCCCCcccccccccceEEEEEeehhhhcccccCcceEEEEEEecCCHH
Confidence 5699999996 34667999999999999 77777766551 1235577766554433
No 42
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.34 E-value=0.0076 Score=69.68 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=39.0
Q ss_pred CCcccccccc-cccccccccccEEEEeeeeec----cCeEEEEEEecHHH
Q psy6230 449 METSVEFCGG-THLAMAHHVGDFCISSEEAIA----KGIRRIVALSGNEA 493 (699)
Q Consensus 449 ~~~~~~~CgG-THV~nT~eIg~~kI~~~~~~~----~g~~RI~~v~G~~A 493 (699)
||..+++|.| |||+||+.|+.|+|+++++.+ ...+||+.++-+.-
T Consensus 73 ~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~~ 122 (545)
T PRK14799 73 KGNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFETE 122 (545)
T ss_pred ccCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCCH
Confidence 6668999999 999999999999999999852 56689999987764
No 43
>KOG1637|consensus
Probab=95.97 E-value=0.0031 Score=69.26 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred eecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEE
Q psy6230 323 GIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDF 371 (699)
Q Consensus 323 ~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df 371 (699)
+..|.+.-.++ .+||++|+|..|+.+.||.+.+ .|.. .+++|++|+
T Consensus 58 l~f~~~~~k~v-fwhssahvlg~a~e~~~g~~lc-~Gpp-~~~gf~yd~ 103 (560)
T KOG1637|consen 58 LKFDDDEGKDV-FWHSSAHVLGEALEQEYGAHLC-IGPP-IEEGFYYDM 103 (560)
T ss_pred ccCCCccccee-eeehhhhHhhHHHHHhcCeeEe-eCCC-CcCceehhh
Confidence 34454444443 6999999999999999997665 4553 478999987
No 44
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=95.59 E-value=0.021 Score=66.58 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeee-------cCceeEEEEecchhHH
Q psy6230 99 YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEAT 170 (699)
Q Consensus 99 y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~-------~~g~~Ri~~~tg~~a~ 170 (699)
+.+.|||+.+|+ +.++.|+||||.|||.|+.|.|++..+- ..-..||..++=+...
T Consensus 93 ~~~~v~vy~~g~----------------~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~ 155 (563)
T TIGR00418 93 NGVKRTPYGWGK----------------AFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKK 155 (563)
T ss_pred CCCeEEEEEeCC----------------EEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCHH
Confidence 457899999997 6889999999999999999999876542 2346788887644433
No 45
>PLN02908 threonyl-tRNA synthetase
Probab=94.14 E-value=0.084 Score=63.10 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeee-------cCceeEEEEecchhHHHHH
Q psy6230 101 DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAI-------AKGIRRIVALSGNEATKAI 173 (699)
Q Consensus 101 ~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~-------~~g~~Ri~~~tg~~a~~~~ 173 (699)
+.|+|.++|+ -+..|+|+||.|||.|+.|.|++.++- .....||..++=+......
T Consensus 218 ~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~ 280 (686)
T PLN02908 218 ATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPDKKLLK 280 (686)
T ss_pred CeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCChHHHH
Confidence 3599999986 234599999999999999999888743 2467799999888776554
Q ss_pred HHH
Q psy6230 174 KKA 176 (699)
Q Consensus 174 ~~~ 176 (699)
+..
T Consensus 281 ~~~ 283 (686)
T PLN02908 281 EYK 283 (686)
T ss_pred HHH
Confidence 433
No 46
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=88.02 E-value=5.3 Score=46.56 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=61.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHhhcCCCCCCcc
Q psy6230 590 KFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKA 669 (699)
Q Consensus 590 ~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~ 669 (699)
.++|..- ++.....+--+|..+.+++. .++++++.+++. .+..-+.. ..++|+.++++++.+.+.++|||=+
T Consensus 325 ~~~v~~~-~~~~~Gv~GivA~rl~~~~~-kP~ivls~~~~~-~~kgS~Rs-----~~g~nl~~~l~~~~~~~l~~~GGH~ 396 (539)
T TIGR00644 325 SVIVVAG-ENWHPGVLGIVASRLAETFN-KPVIVLAIDEGK-GAKGSARS-----ISGIDLYDLLSELREALFLKFGGHA 396 (539)
T ss_pred cEEEEEe-CCCCCchHHHHHHHHHHHHC-CCEEEEEEcCCc-eEEEeecc-----CCCCcHHHHHHHHHHhhccccCChH
Confidence 3444332 33444467778888887664 466677754322 12221111 2479999999998876778888754
Q ss_pred cCeeecCCCCCCHHHHHHHHHHHHHhh
Q psy6230 670 ESAQASGPNYENAPLVLSKARDYASQQ 696 (699)
Q Consensus 670 ~~aQG~~~~~~~l~~al~~a~~~~~~~ 696 (699)
+|=|-.-..++++++.+.+.+++.+.
T Consensus 397 -~AaG~~i~~~~~~~f~~~l~~~~~~~ 422 (539)
T TIGR00644 397 -MAAGLTLKRENLEEFREKLEEKFKKI 422 (539)
T ss_pred -HcCeeEEcHHHHHHHHHHHHHHHHhh
Confidence 45554446788999988888877654
No 47
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=80.70 E-value=2.4 Score=49.35 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=34.6
Q ss_pred ccccccc-ccccCccceeeEEEEeeeeec----CceeEEEEecchhHH
Q psy6230 128 SVEFCGG-THLAMAHHVGDFCISSEEAIA----KGIRRIVALSGNEAT 170 (699)
Q Consensus 128 ~~e~CgG-THv~~t~~i~~~~i~~~~~~~----~g~~Ri~~~tg~~a~ 170 (699)
=+.+|+| .||.+||.|+.|++++..+-+ .-..||+.++=+.-.
T Consensus 76 ~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~~~ 123 (545)
T PRK14799 76 KVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFETEE 123 (545)
T ss_pred ceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCCHH
Confidence 4678999 999999999999999998852 456799888755544
No 48
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.78 E-value=4.8e+02 Score=30.69 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6230 505 TEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567 (699)
Q Consensus 505 ~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k~~ 567 (699)
..+..++++.+.. ++++..-..++.+++++....-....+|..+++.++.++..+-+++
T Consensus 307 ~~L~~l~RKY~~~----~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 307 FALKSLARKYGVT----IEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred HHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666766644 7888888888777776654444445566666666666665554444
No 49
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.92 E-value=3.7e+02 Score=29.04 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Q psy6230 494 TKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEI 536 (699)
Q Consensus 494 ~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~ 536 (699)
.++.+....+...++++...++ .|...++...+.++.+.+
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~---~Ms~~ql~~~~~k~~~si 83 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLK---EMSSTQLRANIAKAEESI 83 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH---hcCHHHHHHHHHHHHHHH
Confidence 3333444455556666665554 244556666666655544
No 50
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=87 Score=36.96 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.5
Q ss_pred cccccccccccCccceeeEEEEeeee
Q psy6230 128 SVEFCGGTHLAMAHHVGDFCISSEEA 153 (699)
Q Consensus 128 ~~e~CgGTHv~~t~~i~~~~i~~~~~ 153 (699)
=.++|=|.||.+||.| .|++++..+
T Consensus 127 ~~dlc~gph~~~t~~i-~fkl~~~~~ 151 (589)
T COG0441 127 FVDLCRGPHVPSTGKI-AFKLLKLAG 151 (589)
T ss_pred cccccCCCCCCccceE-EEEEEEecc
Confidence 3678999999999999 999987653
No 51
>PHA02684 ORF066 virion protein; Provisional
Probab=22.94 E-value=30 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=15.7
Q ss_pred cccccccccccCccceeeEEEEee
Q psy6230 128 SVEFCGGTHLAMAHHVGDFCISSE 151 (699)
Q Consensus 128 ~~e~CgGTHv~~t~~i~~~~i~~~ 151 (699)
|+-.|||||+--..-=-.++++..
T Consensus 4 siyy~ggth~~~~ap~aa~vvl~~ 27 (221)
T PHA02684 4 SIYYCGGTHLVAAAPGAALVLLDA 27 (221)
T ss_pred ceEecCCeeeeecCCCceEEEecC
Confidence 677899999866554445555543
No 52
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=21.98 E-value=1.2e+03 Score=27.50 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=55.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHh----hcCCCCC
Q psy6230 591 FIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTD----IMGGKGG 666 (699)
Q Consensus 591 ~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~----~l~GkGG 666 (699)
++|..- ++-..-.+--+|.+|.+++.. ++++++.. +++...--+.. -.|+|..+.++.+.. .|- +.|
T Consensus 355 ~ivv~~-~~wh~GViGIVAsrl~e~y~r-P~ivls~~-~~g~~kGS~RS-----i~g~~l~~aL~~~~~~~~~ll~-~fG 425 (575)
T PRK11070 355 GLAMYH-PEWHQGVVGILASRIKERFHR-PVIAFAPA-GDGTLKGSGRS-----IQGLHMRDALERLDTLYPGLIL-KFG 425 (575)
T ss_pred EEEEEe-CCCCccHHHHHHHHHHHHHCC-CEEEEEEc-CCCeEEEEEeC-----CCCCcHHHHHHHhhhcccchhh-ccC
Confidence 344333 334455788888999888754 66666643 22322211111 246899888886532 333 333
Q ss_pred CcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230 667 GKAESAQASGPNYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 667 G~~~~aQG~~~~~~~l~~al~~a~~~~~~~l 697 (699)
|= .+|=|-.-..++++.+.+...+++.+.+
T Consensus 426 GH-~~AaG~ti~~e~l~~f~~~l~~~~~~~~ 455 (575)
T PRK11070 426 GH-AMAAGLSLEEDKFELFQQRFGELVTEWL 455 (575)
T ss_pred Ch-HHhCcceeCHHHHHHHHHHHHHHHHHhc
Confidence 32 2354434467888888888877775543
No 53
>PRK10869 recombination and repair protein; Provisional
Probab=20.85 E-value=1.4e+03 Score=26.83 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6230 505 TEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567 (699)
Q Consensus 505 ~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k~~ 567 (699)
..+..|.++.+.+ .+++....+++..+++...-.-....+|+++++++++++..+..++
T Consensus 306 ~~l~~L~rKyg~~----~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 306 SKQISLARKHHVS----PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666543 7777777777666665433333334455556666655555554444
Done!