Query psy6230
Match_columns 699
No_of_seqs 468 out of 2862
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:08:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kew_A DHHA1 domain protein; s 100.0 1.5E-51 5.3E-56 422.4 9.6 229 217-495 5-233 (241)
2 2zze_A Alanyl-tRNA synthetase; 100.0 2.8E-46 9.5E-51 430.2 21.5 213 248-491 539-752 (752)
3 2e1b_A PH0108, 216AA long hypo 100.0 6.1E-47 2.1E-51 382.6 11.4 207 216-488 6-214 (216)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 5.6E-44 1.9E-48 411.1 20.5 210 248-491 527-738 (739)
5 1v4p_A Alanyl-tRNA synthetase; 99.9 9.2E-27 3.2E-31 223.8 17.1 144 332-491 4-152 (157)
6 1tke_A Threonyl-tRNA synthetas 99.9 1.3E-25 4.5E-30 228.2 17.3 167 301-489 40-222 (224)
7 1nyr_A Threonyl-tRNA synthetas 99.9 1.7E-22 5.7E-27 235.1 16.2 172 301-493 42-225 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 99.9 9.4E-22 3.2E-26 228.2 16.4 169 301-491 40-224 (642)
9 2zvf_A Alanyl-tRNA synthetase; 99.8 4.5E-20 1.5E-24 179.6 18.6 170 489-697 1-170 (171)
10 3g98_A Alanyl-tRNA synthetase; 99.6 1.4E-15 4.9E-20 137.3 12.3 105 586-694 6-110 (111)
11 3kew_A DHHA1 domain protein; s 99.6 1.8E-16 6.1E-21 162.3 5.2 65 90-172 170-234 (241)
12 2zze_A Alanyl-tRNA synthetase; 99.5 5.7E-15 1.9E-19 170.6 3.8 56 96-167 697-752 (752)
13 2ztg_A Alanyl-tRNA synthetase; 99.4 1.5E-13 5.1E-18 158.8 4.1 56 96-168 684-739 (739)
14 2e1b_A PH0108, 216AA long hypo 99.3 3.4E-13 1.2E-17 135.8 4.6 46 103-164 169-214 (216)
15 1v4p_A Alanyl-tRNA synthetase; 99.0 2.3E-10 7.9E-15 109.3 4.3 51 101-167 101-152 (157)
16 1tke_A Threonyl-tRNA synthetas 98.4 6.4E-08 2.2E-12 97.8 2.1 50 99-165 166-222 (224)
17 1nyr_A Threonyl-tRNA synthetas 98.4 1.3E-07 4.6E-12 109.8 4.5 71 91-178 146-234 (645)
18 1qf6_A THRRS, threonyl-tRNA sy 97.9 1E-05 3.5E-10 93.8 6.2 49 101-166 168-223 (642)
19 2zxr_A Single-stranded DNA spe 49.6 82 0.0028 36.2 11.3 86 598-697 337-422 (666)
20 2atz_A H. pylori predicted cod 25.7 1.3E+02 0.0046 28.0 6.4 86 315-407 65-152 (180)
21 2i7u_A Four-alpha-helix bundle 25.1 25 0.00087 26.0 1.2 15 653-667 18-32 (62)
22 2zvf_A Alanyl-tRNA synthetase; 22.8 81 0.0028 29.1 4.7 40 165-211 1-40 (171)
23 3twe_A Alpha4H; unknown functi 21.7 1.3E+02 0.0043 18.9 3.6 17 549-565 6-22 (27)
No 1
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.5e-51 Score=422.38 Aligned_cols=229 Identities=17% Similarity=0.152 Sum_probs=206.5
Q ss_pred ccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEcc
Q psy6230 217 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSP 296 (699)
Q Consensus 217 i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~ 296 (699)
.+||.++|++++-+++.++.. ..+...++||+|+|||++ ||||+|+|+|. .+.|.+|+
T Consensus 5 ~ly~~d~y~~~~~a~V~~~~~------~~~~~~vvLd~T~FYpeg------GGQ~~D~G~i~--------~~~V~~v~-- 62 (241)
T 3kew_A 5 KLYYEDQYIKEFKGEIIEVKE------IDGKFHVLLDQTAFFPGG------GGQMGDLGLID--------GIKVLDVY-- 62 (241)
T ss_dssp EGGGTCTTCCEEEECEEEEEE------ETTEEEEEESEECCCCCB------TTBCCCCEEET--------TEEEEEEE--
T ss_pred hhhhhCcccceeEEEEEEEEe------cCCeEEEEEeCCcccCCC------CCCCCCEEEEe--------eEEEEEEE--
Confidence 479999999999888876541 223478999999999999 99999999995 47999999
Q ss_pred ccccCCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCC
Q psy6230 297 YHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGA 376 (699)
Q Consensus 297 ~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ 376 (699)
+.+|.++|.+. +++.+|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|++++++++||||+ ++
T Consensus 63 ---~~~g~i~H~~~--~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~ 133 (241)
T 3kew_A 63 ---EEEGKVYHVLE--KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GF 133 (241)
T ss_dssp ---EETTEEEEEES--SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SC
T ss_pred ---EeCCEEEEEEC--CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CC
Confidence 57999999974 678899999999999999999999999999999999999954 7999999999999999 68
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccc
Q psy6230 377 MTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFC 456 (699)
Q Consensus 377 ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~C 456 (699)
+|++++.+||+.||++|++|+||++.+++++||++++ ++++ +++|++.||||+|++ +|+++|
T Consensus 134 lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~-~~~~-~e~~~~~VRvv~ig~----------------~~~~~C 195 (241)
T 3kew_A 134 LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVK-TRRA-LPKTDEEIRIVEIVG----------------LDLNAC 195 (241)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCC-CSSC-CCCCSSCCCEEEETT----------------TEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcC-hhhc-CCccCCcEEEEEECC----------------eEEEcC
Confidence 9999999999999999999999999999999999974 6664 677899999999997 689999
Q ss_pred cccccccccccccEEEEeeeeeccCeEEEEEEecHHHHH
Q psy6230 457 GGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATK 495 (699)
Q Consensus 457 gGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v~G~~A~~ 495 (699)
|||||+|||+||.|+|++.++++ |.+||+|+||.+|++
T Consensus 196 gGtHV~~TgeIg~fkI~~~~~~~-~~~RI~~~~G~~a~~ 233 (241)
T 3kew_A 196 CGVHPRNTRDLQVIKIRRWEKHK-NATRIEYVAGNRAVS 233 (241)
T ss_dssp CSCCCSBSGGGCCEEEEEEEEET-TEEEEEEEEGGGGC-
T ss_pred CCCCcCCHhhcCCEEEEEEeccC-CcEEEEEEECHHHHh
Confidence 99999999999999999999975 557999999999875
No 2
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=2.8e-46 Score=430.19 Aligned_cols=213 Identities=25% Similarity=0.241 Sum_probs=197.6
Q ss_pred eeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecccccccCCCeeeeecCC
Q psy6230 248 ASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGS 327 (699)
Q Consensus 248 ~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~ 327 (699)
..++||+|+||||+ ||||+|+|+|...+ ..+.|.+|+ +.+|.++|.+...+.+.+|++|.++|||
T Consensus 539 ~~VVLD~TpFYpEg------GGQ~~D~G~I~~~g----~~~~V~dv~-----k~~g~ivH~~~~~~~l~vGd~V~~~VD~ 603 (752)
T 2zze_A 539 DWVILDATAFYPEG------GGQPYDTGVLIVNG----REVXVTNVQ-----XVGXVIIHXVEDPGAFXEGMIVHGXIDW 603 (752)
T ss_dssp TEEEESEECSCCSB------TTBCCCCEEEEETT----EEEEEEEEE-----EETTEEEEEESCGGGCCTTCEEEEEECH
T ss_pred CEEEEeCCCCCCCC------CCCCCCEEEEEeCC----EEEEEEeee-----ecCcEEEEeccccCccCcCCeEEEEEeH
Confidence 46899999999999 99999999996532 379999999 4799999998766778899999999999
Q ss_pred cCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHH
Q psy6230 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLA 407 (699)
Q Consensus 328 ~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~ 407 (699)
+||+.+|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++.+||+.||++|++++||++.+++++
T Consensus 604 ~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~e 683 (752)
T 2zze_A 604 XRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRT 683 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHH
Confidence 99999999999999999999999999899999999999999999998899999999999999999999999999999999
Q ss_pred HHHhhhchhhhc-CCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEEE
Q psy6230 408 DAKKIKGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486 (699)
Q Consensus 408 eA~~~~~l~~~~-~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~ 486 (699)
||+++.+++.++ +++|.+.||||+||+ +|+++||||||+|||+||.|+|++++++++|++||+
T Consensus 684 EA~~~~~~~lf~~ge~ygd~VRVV~IGd----------------~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIe 747 (752)
T 2zze_A 684 TAEQXYGFRLYQGGVVPGREIRVVXIED----------------WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERII 747 (752)
T ss_dssp HHHHHHCGGGCSSCCCCSSEEEEEEETT----------------TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEE
T ss_pred HHhhcchhhhhcCCCCCCCeEEEEEECC----------------ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEE
Confidence 999987665432 678888999999997 789999999999999999999999999999999999
Q ss_pred EEecH
Q psy6230 487 ALSGN 491 (699)
Q Consensus 487 ~v~G~ 491 (699)
|+||.
T Consensus 748 avtG~ 752 (752)
T 2zze_A 748 FACGE 752 (752)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99994
No 3
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=6.1e-47 Score=382.59 Aligned_cols=207 Identities=18% Similarity=0.141 Sum_probs=186.9
Q ss_pred cccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEc
Q psy6230 216 TLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTS 295 (699)
Q Consensus 216 ~i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~ 295 (699)
...||.++|++++-+++..+- ...++||+|+|||++ ||||+|+|+|. .++|.+|+
T Consensus 6 ~~ly~~d~y~~~~~a~V~~~~----------~~~vvld~T~Fype~------GGQ~~D~G~i~--------~~~V~~v~- 60 (216)
T 2e1b_A 6 RKLYYEDAYLKEAKGRVLEIR----------DNAILLDQTIFYPTG------GGQPHDRGTIN--------GVEVLDVY- 60 (216)
T ss_dssp CCSTTSCTTCCEEEECBCCCC----------SSCCCBSCCCSCCCC------TTCCCCCEEET--------TEEEEEEE-
T ss_pred HHHHhhCcccceeeEEEEEEe----------CCEEEEeCCCccCCC------CCCCCCEEEEc--------cEEEEEEE-
Confidence 357899999988877776541 237999999999999 99999999995 28999999
Q ss_pred cccccC-CCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCc-ccccCccccCCcEEEEEec
Q psy6230 296 PYHVKS-HGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPE-ADQKGSLVAPDRLRFDFTN 373 (699)
Q Consensus 296 ~~~~~~-~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~-~~~~Gs~v~~~~~r~Df~~ 373 (699)
+. +|.++|.+...+.+.+|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++++++||||++
T Consensus 61 ----~~~~~~i~H~~~~~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~ 136 (216)
T 2e1b_A 61 ----KDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY 136 (216)
T ss_dssp ----CCTTCCCEEEESCGGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEEC
T ss_pred ----ECcCCEEEEEEccCCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeC
Confidence 45 89999998655678999999999999999999999999999999999999953 4678999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCccc
Q psy6230 374 KGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSV 453 (699)
Q Consensus 374 ~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~ 453 (699)
+++++++ +.+||+.||++|++++||++.++++ ||+|+||+ +|.
T Consensus 137 ~~~lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~--------------------vRvv~ig~----------------~~~ 179 (216)
T 2e1b_A 137 PENLNKY-KEQIISLFNKYVDEGGEVKIWWEGD--------------------RRYTQIRD----------------FEV 179 (216)
T ss_dssp SSCGGGG-HHHHHHHHHHHHHHCCBEEEEESSS--------------------CEEEEETT----------------SCE
T ss_pred CCCCCHH-HHHHHHHHHHHHhcCCCEEEEEcCC--------------------EEEEEECC----------------EEE
Confidence 8889987 9999999999999999999988764 79999997 689
Q ss_pred ccccccccccccccccEEEEeeeeeccCeEEEEEE
Q psy6230 454 EFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVAL 488 (699)
Q Consensus 454 ~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v 488 (699)
++||||||+|||+||.|+|++++++++|++||+|.
T Consensus 180 ~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 180 IPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp ECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEE
Confidence 99999999999999999999999999999999986
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.6e-44 Score=411.10 Aligned_cols=210 Identities=25% Similarity=0.257 Sum_probs=193.2
Q ss_pred eeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCCCEEEEEecccccc-cCCCeeeeecC
Q psy6230 248 ASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICA-WTGGRSEGIPG 326 (699)
Q Consensus 248 ~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~g~i~H~~~~~~~l-~~G~~V~~~vD 326 (699)
..++||+|+||||+ ||||+|+|+|...+ ..+.|.+|+ +.+|.++|.+. +.+ .+|++|.++||
T Consensus 527 ~~VVLD~TpFYpEg------GGQ~~D~G~I~~~g----~~~~V~dv~-----k~~g~ivH~~~--~~~~~~Gd~V~~~VD 589 (739)
T 2ztg_A 527 DFVILNRSAFYPES------GGQDNDVGYLIANG----GKFEVVDVL-----EADGVVLHVVK--GAKPEVGTKVKGVID 589 (739)
T ss_dssp TEEEESEECCCCSB------TTBCCCCEEEEETT----EEEEECEEE-----EETTEEEEECC--SSCCCTTCEEEEEEC
T ss_pred CEEEEeCCCCCCCC------CCCCCCEEEEEECC----EEEEEEEEE-----EECCEEEEEEc--ccCCCCCCEEEEEEc
Confidence 36899999999999 99999999996532 379999999 47999999974 445 68999999999
Q ss_pred CcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCH
Q psy6230 327 SARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSL 406 (699)
Q Consensus 327 ~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~ 406 (699)
|+||+.+|++|||+|||++||+++||.+++|.||+++++++||||+++.++|++++.+||+.||++|++++||++.++++
T Consensus 590 ~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~ 669 (739)
T 2ztg_A 590 SDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDR 669 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHhhhchhhhc-CCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEEE
Q psy6230 407 ADAKKIKGLRAMF-DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 485 (699)
Q Consensus 407 ~eA~~~~~l~~~~-~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~RI 485 (699)
+||.++.+++.+. +++|.+.||||+|++ ++++||||||+|||+||.|+|++++++++|++||
T Consensus 670 eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-----------------~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRI 732 (739)
T 2ztg_A 670 IEAERKFGFRLYQGGVPPGRKIRVVQVGD-----------------DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRF 732 (739)
T ss_dssp HHHHHHHCGGGGTTCCCCSSEEEEEEETT-----------------EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEE
T ss_pred HHHHHhCCHhhhcCCCCCCCeEEEEEECC-----------------eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEE
Confidence 9999987666544 466778899999986 6899999999999999999999999999999999
Q ss_pred EEEecH
Q psy6230 486 VALSGN 491 (699)
Q Consensus 486 ~~v~G~ 491 (699)
+|+||.
T Consensus 733 eavtG~ 738 (739)
T 2ztg_A 733 EFAAGE 738 (739)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999996
No 5
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=9.2e-27 Score=223.84 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=119.4
Q ss_pred HHHHHhHHHHHHHHHHHhHhCCcccccCc-cccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHH
Q psy6230 332 PIMSNHTATHILNHALRFVLGPEADQKGS-LVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAK 410 (699)
Q Consensus 332 ~~m~~HTa~HLL~~al~~v~g~~~~~~Gs-~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~ 410 (699)
..|++|||+|||++|++++||.++.+.++ +++++++|+||+.++++|++++.+||+.||++|++++||++.+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 57999999999999999999955655554 66666888888877789999999999999999999999999999999999
Q ss_pred hhhchhhhcCCCCC---CCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeee-eccCeEEEE
Q psy6230 411 KIKGLRAMFDETYP---DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEA-IAKGIRRIV 486 (699)
Q Consensus 411 ~~~~l~~~~~e~y~---~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~-~~~g~~RI~ 486 (699)
++.+...+....+| +.||||+||+ +|+++||||||+|||+||.|+|++.++ .+++..||+
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig~----------------~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIED----------------WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEETT----------------TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEECC----------------eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEE
Confidence 98554322112234 4699999997 689999999999999999999999886 345566898
Q ss_pred EEecH
Q psy6230 487 ALSGN 491 (699)
Q Consensus 487 ~v~G~ 491 (699)
|..++
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEee
Confidence 88774
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.93 E-value=1.3e-25 Score=228.22 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=135.5
Q ss_pred CCCEEEEEecccccccCCCeeeeecCCcCCh-HHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCH
Q psy6230 301 SHGYSYIEPCVEICAWTGGRSEGIPGSARRR-PIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTA 379 (699)
Q Consensus 301 ~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~-~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~ 379 (699)
.+|.+++. ...+..|+.|+ .|+++.+. ..|++||++|||++|++++||..-...|. ..+++|||||++++++|+
T Consensus 40 vNg~l~dL---~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~-~~~~g~y~d~~~~~~~t~ 114 (224)
T 1tke_A 40 VNGELVDA---CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGP-VIDNGFYYDVDLDRTLTQ 114 (224)
T ss_dssp ETTEEEET---TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCC-EETTEEEEEEECSSCCCH
T ss_pred ECCEEecc---ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECC-ccCCeEEEEEeCCCCCCH
Confidence 57777763 55677788877 57887764 88999999999999999999842123354 458999999998889999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhch------hhhcCC-C-CCCCEEEEEeCCCcccccCCcccccCCCc
Q psy6230 380 DQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGL------RAMFDE-T-YPDPVRVVCVGTPVEQLESEPESQAGMET 451 (699)
Q Consensus 380 ~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l------~~~~~e-~-y~~~VRvV~I~~~~~~l~~~~~~~~~~~~ 451 (699)
+++.+||+.||++|++++||+..+++++||.++..- ..++.+ . +.+.||++++++
T Consensus 115 edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~----------------- 177 (224)
T 1tke_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE----------------- 177 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT-----------------
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCC-----------------
Confidence 999999999999999999999999999999986321 222332 3 456899999986
Q ss_pred ccccccccccccccccccEEEEeeee-------eccCeEEEEEEe
Q psy6230 452 SVEFCGGTHLAMAHHVGDFCISSEEA-------IAKGIRRIVALS 489 (699)
Q Consensus 452 ~~~~CgGTHV~nT~eIg~~kI~~~~~-------~~~g~~RI~~v~ 489 (699)
..++|+||||+|||+||.|+|++.++ ..+..+||+.++
T Consensus 178 ~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 178 YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp EEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred EEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 36899999999999999999999876 244578999887
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.88 E-value=1.7e-22 Score=235.15 Aligned_cols=172 Identities=18% Similarity=0.271 Sum_probs=138.9
Q ss_pred CCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHH
Q psy6230 301 SHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTAD 380 (699)
Q Consensus 301 ~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~ 380 (699)
.+|.+++ ...++..+.+|+..-..+.+-..|++|||+|||++|++++||.+..+.|+.+ +++|||||+++.++|++
T Consensus 42 vng~~~d---l~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~e 117 (645)
T 1nyr_A 42 FNGQLVD---LTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSD 117 (645)
T ss_dssp ETTEEEC---TTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCST
T ss_pred ECCEEEe---CCcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHH
Confidence 4666554 3455666666665444555678999999999999999999998778999987 99999999988899999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhch---h-hhcCCCCC-CCEEEEEeCCCcccccCCcccccCCCccccc
Q psy6230 381 QVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGL---R-AMFDETYP-DPVRVVCVGTPVEQLESEPESQAGMETSVEF 455 (699)
Q Consensus 381 ~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l---~-~~~~e~y~-~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~ 455 (699)
++.+||+.||++|++++||+..+++++||.++.+- . .+...... +.||||++|+ + +++
T Consensus 118 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~----------------~-~dl 180 (645)
T 1nyr_A 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGD----------------F-TDL 180 (645)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETT----------------E-EEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECC----------------E-EEe
Confidence 99999999999999999999999999999987320 0 01111111 4799999987 3 789
Q ss_pred ccccccccccccccEEEEeee-------eeccCeEEEEEEecHHH
Q psy6230 456 CGGTHLAMAHHVGDFCISSEE-------AIAKGIRRIVALSGNEA 493 (699)
Q Consensus 456 CgGTHV~nT~eIg~~kI~~~~-------~~~~g~~RI~~v~G~~A 493 (699)
||||||+|||+||.|+|++++ +..+..+||+.++....
T Consensus 181 C~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~ 225 (645)
T 1nyr_A 181 CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK 225 (645)
T ss_dssp CCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH
T ss_pred cCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCH
Confidence 999999999999999999997 34567889999998653
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.86 E-value=9.4e-22 Score=228.16 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCEEEEEecccccccCCCeeeeecCCc-CChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCH
Q psy6230 301 SHGYSYIEPCVEICAWTGGRSEGIPGSA-RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTA 379 (699)
Q Consensus 301 ~~g~i~H~~~~~~~l~~G~~V~~~vD~~-rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~ 379 (699)
.+|.+++. ..++..+.+|+ .++++ .+-..|++|||+|||++|++++||....+.|+++. ++|||||+++.++|+
T Consensus 40 vng~~~dl---~~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~ 114 (642)
T 1qf6_A 40 VNGELVDA---CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQ 114 (642)
T ss_dssp ETTEEEET---TSCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCH
T ss_pred ECCEEecc---ccccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCH
Confidence 46666553 44555555555 45554 56788999999999999999999853347888774 889999999889999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhch------hhhc-CCCCC-CCEEEEEeCCCcccccCCcccccCCCc
Q psy6230 380 DQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGL------RAMF-DETYP-DPVRVVCVGTPVEQLESEPESQAGMET 451 (699)
Q Consensus 380 ~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l------~~~~-~e~y~-~~VRvV~I~~~~~~l~~~~~~~~~~~~ 451 (699)
+++.+||+.||++|++++||+..+++++||.++... ..+. ++.++ +.||++++|+
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~----------------- 177 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE----------------- 177 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT-----------------
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECC-----------------
Confidence 999999999999999999999999999999987221 0111 22222 4799999986
Q ss_pred ccccccccccccccccccEEEEeeee---e----ccCeEEEEEEecH
Q psy6230 452 SVEFCGGTHLAMAHHVGDFCISSEEA---I----AKGIRRIVALSGN 491 (699)
Q Consensus 452 ~~~~CgGTHV~nT~eIg~~kI~~~~~---~----~~g~~RI~~v~G~ 491 (699)
.+++|+||||+|||+||.|+|+++++ . ...++||+..+-+
T Consensus 178 ~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~ 224 (642)
T 1qf6_A 178 YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (642)
T ss_dssp EEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECS
T ss_pred EEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccC
Confidence 36899999999999999999999988 2 3346799988743
No 9
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.84 E-value=4.5e-20 Score=179.60 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=138.3
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6230 489 SGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQK 568 (699)
Q Consensus 489 ~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~~~~l~k~~~ 568 (699)
.|.+|++++.+. ++.+.+++..|+++ ++++.+++.+ |+++++++++++..++++++
T Consensus 1 ~G~~A~~~~~~~---~~~l~~~a~~Lk~~----~~~l~~~v~~-----------------l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 1 MGEAAIEAVEEM---ERLLREASSILRVE----PAKLPKTVER-----------------FFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp -CGGGTHHHHHH---HHHHHHHHHTTTCC----TTSHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH---HHHHHHHHHHhCCC----hHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 488999998887 67899999999976 7799999987 77888899999998888877
Q ss_pred HHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhccCC
Q psy6230 569 AAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGL 648 (699)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~ 648 (699)
...++.+...+ .+.++.++++..+ +.|++.|+.+++.++++ +.++++++.+ ++ +.++++++++ ++
T Consensus 57 ~~~~~~l~~~~----~~i~g~~~~~~~~--~~d~~~lr~~~~~l~~~--~~vv~l~~~~--~~-~~~v~~~~~~----~~ 121 (171)
T 2zvf_A 57 DLWADILMERA----EEFDSMKVVAEVV--DADMQALQKLAERLAEK--GAVGCLMAKG--EG-KVFVVTFSGQ----KY 121 (171)
T ss_dssp HHHHHHHHTTC----EESSSCEEEEEEC--SCCHHHHHHHHHHHHHT--TEEEEEEEEC--SS-SEEEEEEESS----SS
T ss_pred HHHHHHHHhhc----EEeCCEEEEEEEe--CCCHHHHHHHHHHHhcC--CCEEEEEEcC--CC-eEEEEEECCC----CC
Confidence 66544443322 1256777877776 67899999999999887 5566677654 34 5666776654 59
Q ss_pred CHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230 649 TAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 649 ~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~l 697 (699)
+|++|++++++.+||||||+|+||||+|++++.+++|++.++++++.+.
T Consensus 122 ~a~~lvk~~~~~~gGkGGGkp~~AQggg~~~~~l~~al~~~~~~~~~~~ 170 (171)
T 2zvf_A 122 DARELLREIGRVAKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHE 170 (171)
T ss_dssp CHHHHHHHHHHHHTEECCBCSSEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCCcHHHcccCCCChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999997664
No 10
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.63 E-value=1.4e-15 Score=137.34 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=92.9
Q ss_pred cCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHhhcCCCC
Q psy6230 586 RKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKG 665 (699)
Q Consensus 586 ~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~~l~GkG 665 (699)
.++.++++..++ +.|++.||.+++.++++.++.++++++.. ++++.++++++++++++ ++|++|++++++.+||||
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~~~vvvl~~~~--~~kv~~v~~v~~~~~~~-~~A~~lvk~v~~~~gGkG 81 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASRK--GDKINFVIGVSKEISDK-VNAKEVIREVGKVLKGGG 81 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSSSEEEEEEEEE--TTEEEEEEEECGGGTTT-SCHHHHHHHHHHHTTBCC
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcCCcEEEEEEec--CCcEEEEEEECHHHhcc-CCHHHHHHHHHHHcCCCc
Confidence 567888888885 78999999999999998877666666543 56899999999998766 999999999999999999
Q ss_pred CCcccCeeecCCCCCCHHHHHHHHHHHHH
Q psy6230 666 GGKAESAQASGPNYENAPLVLSKARDYAS 694 (699)
Q Consensus 666 GG~~~~aQG~~~~~~~l~~al~~a~~~~~ 694 (699)
||+|++|||++++++++++|++.++++++
T Consensus 82 GGkp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 82 GGRADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp EECSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred CCcHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999875
No 11
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.62 E-value=1.8e-16 Score=162.31 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=57.1
Q ss_pred cccccccCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecchhH
Q psy6230 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEA 169 (699)
Q Consensus 90 gl~~~~~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~a 169 (699)
++++ ++|+|+++||||+||+ +|+++||||||.|||+||.|+|+++++++. .+||+|+||.+|
T Consensus 170 ~~~~-~~e~~~~~VRvv~ig~----------------~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~-~~RI~~~~G~~a 231 (241)
T 3kew_A 170 KTRR-ALPKTDEEIRIVEIVG----------------LDLNACCGVHPRNTRDLQVIKIRRWEKHKN-ATRIEYVAGNRA 231 (241)
T ss_dssp CCSS-CCCCCSSCCCEEEETT----------------TEEEECCSCCCSBSGGGCCEEEEEEEEETT-EEEEEEEEGGGG
T ss_pred Chhh-cCCccCCcEEEEEECC----------------eEEEcCCCCCcCCHhhcCCEEEEEEeccCC-cEEEEEEECHHH
Confidence 3555 4788999999999998 899999999999999999999999999855 569999999999
Q ss_pred HHH
Q psy6230 170 TKA 172 (699)
Q Consensus 170 ~~~ 172 (699)
++.
T Consensus 232 ~~~ 234 (241)
T 3kew_A 232 VSE 234 (241)
T ss_dssp C--
T ss_pred Hhc
Confidence 854
No 12
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.49 E-value=5.7e-15 Score=170.65 Aligned_cols=56 Identities=34% Similarity=0.522 Sum_probs=54.3
Q ss_pred cCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecch
Q psy6230 96 DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGN 167 (699)
Q Consensus 96 ~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~ 167 (699)
+++|.++||||+||+ +|+++||||||.|||+||.|+|++++++++|+|||+|+||.
T Consensus 697 ge~ygd~VRVV~IGd----------------~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 697 GVVPGREIRVVXIED----------------WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp CCCCSSEEEEEEETT----------------TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred CCCCCCeEEEEEECC----------------ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 789999999999998 89999999999999999999999999999999999999994
No 13
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.37 E-value=1.5e-13 Score=158.81 Aligned_cols=56 Identities=32% Similarity=0.469 Sum_probs=52.9
Q ss_pred cCCCCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEecchh
Q psy6230 96 DETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNE 168 (699)
Q Consensus 96 ~e~y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~tg~~ 168 (699)
++.|.++||||+||+ |+++||||||.|||+||.|+|++++++++|+|||+|+||.+
T Consensus 684 ~~~~~d~VRVV~IGd-----------------~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~~ 739 (739)
T 2ztg_A 684 GVPPGRKIRVVQVGD-----------------DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739 (739)
T ss_dssp CCCCSSEEEEEEETT-----------------EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESCC
T ss_pred CCCCCCeEEEEEECC-----------------eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEecCC
Confidence 678889999999996 78999999999999999999999999999999999999963
No 14
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.35 E-value=3.4e-13 Score=135.79 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=44.8
Q ss_pred eEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeeeecCceeEEEEe
Q psy6230 103 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVAL 164 (699)
Q Consensus 103 vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~~~~g~~Ri~~~ 164 (699)
||||+||+ +|+++||||||.|||+||.|+|++++++++|+|||+|.
T Consensus 169 vRvv~ig~----------------~~~~~CgGtHV~~TgeIg~fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 169 RRYTQIRD----------------FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp CEEEEETT----------------SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEECC----------------EEEECCCCCCcccHhhCceEEEEEEeEEcCCEEEEEEE
Confidence 99999998 89999999999999999999999999999999999985
No 15
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=98.97 E-value=2.3e-10 Score=109.31 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeee-ecCceeEEEEecch
Q psy6230 101 DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEA-IAKGIRRIVALSGN 167 (699)
Q Consensus 101 ~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~-~~~g~~Ri~~~tg~ 167 (699)
+.||||+||+ +|+++||||||.|||+||.|+|++.++ ..++.-||.|..++
T Consensus 101 ~~vrv~~ig~----------------~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 101 RILKVVVIED----------------WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp CEEEEEEETT----------------TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred CeEEEEEECC----------------eeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 3699999998 899999999999999999999999987 34555688887664
No 16
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.40 E-value=6.4e-08 Score=97.81 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=41.5
Q ss_pred CCCCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeee-------ecCceeEEEEec
Q psy6230 99 YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEA-------IAKGIRRIVALS 165 (699)
Q Consensus 99 y~~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~-------~~~g~~Ri~~~t 165 (699)
+.+.|||+++|+ + +++||||||.|||+||.|+|++.++ ..+-..||+.++
T Consensus 166 ~~~~v~vy~~g~----------------~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 166 HDDKPGLYFHEE----------------Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp TTCCCEEEEETT----------------E-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred CCCeeEEEEeCC----------------E-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 567899999997 5 6899999999999999999999866 223457888764
No 17
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.38 E-value=1.3e-07 Score=109.81 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=55.4
Q ss_pred cccccc-CCCC----------CCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeee-------
Q psy6230 91 LRAMFD-ETYP----------DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEE------- 152 (699)
Q Consensus 91 l~~~~~-e~y~----------~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~------- 152 (699)
++++|+ +.|. +.||||++|+ + +++||||||.|||+||.|+|++++
T Consensus 146 A~~~f~~~~yk~~li~~~~~~~~vrv~~~g~----------------~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~ 208 (645)
T 1nyr_A 146 AKELFSNDEYKLELIDAIPEDENVTLYSQGD----------------F-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGD 208 (645)
T ss_dssp HHHHCSSCHHHHHHHCCCSSSCCCEEEEETT----------------E-EEECCSCCCSCGGGCCEEEEEEEEEEETTSC
T ss_pred HHHHHhhCcchHHHhhcCCCCCeeEEEEECC----------------E-EEecCCcccCCCCCCceEEEeeeCchHHHHH
Confidence 555676 4443 5799999997 5 789999999999999999999996
Q ss_pred eecCceeEEEEecchhHHHHHHHHHH
Q psy6230 153 AIAKGIRRIVALSGNEATKAIKKAQV 178 (699)
Q Consensus 153 ~~~~g~~Ri~~~tg~~a~~~~~~~~~ 178 (699)
+..+...||..++.....+..+..+.
T Consensus 209 ~~~~~l~ri~g~~~~~~~~l~~~~~~ 234 (645)
T 1nyr_A 209 SNNKMLQRIYGTAFFDKKELKAHLQM 234 (645)
T ss_dssp SSSCEEEEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHhhhhhhh
Confidence 45667899999988765544444433
No 18
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.87 E-value=1e-05 Score=93.78 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=41.2
Q ss_pred CCeEEEEecCCcccccCCcCccccCcccccccccccccCccceeeEEEEeeee---e----cCceeEEEEecc
Q psy6230 101 DPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEA---I----AKGIRRIVALSG 166 (699)
Q Consensus 101 ~~vRvv~i~~~~~~~~~~~~~~~~~~~~~e~CgGTHv~~t~~i~~~~i~~~~~---~----~~g~~Ri~~~tg 166 (699)
++||||++|+ + +++||||||.|||+||.|+|++.++ . ..-+.||+-.+=
T Consensus 168 ~~v~vy~~g~----------------~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~ 223 (642)
T 1qf6_A 168 DKPGLYFHEE----------------Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223 (642)
T ss_dssp CCCEEEEETT----------------E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred CceEEEEECC----------------E-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeecccc
Confidence 4799999997 5 6899999999999999999999988 3 234678887763
No 19
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=49.58 E-value=82 Score=36.21 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEecChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCC
Q psy6230 598 AGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGP 677 (699)
Q Consensus 598 ~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~ 677 (699)
.+-....+--+|..+.+++. .++++++. ++....+ ..++|+.+++..+.+.+ ++|||=+ +|=|..-
T Consensus 337 ~~wh~GViGIVAsrl~e~~~-rP~iv~a~----~kgSaRS-------i~g~nl~~~L~~~~~ll-~~gGGH~-~AAG~si 402 (666)
T 2zxr_A 337 PEGHPGVMGIVASRILEATL-RPVFLVAQ----GKGTVRS-------LAPISAVEALRSAEDLL-LRYGGHK-EAAGFAM 402 (666)
T ss_dssp TTCCHHHHHHHHHHHHHHHC-SCEEEEET----TEEEEEC-------CTTCCHHHHHHHTGGGC-SEEEECS-SEEEEEC
T ss_pred CCcCcccHHHHHHHHHHHhC-CCEEEEEC----CEEEEEC-------CCCccHHHHHHHHHhhC-cccCCCh-HHccccc
Confidence 34456677888888887764 35556552 3443332 24699999999877655 4555544 5666555
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy6230 678 NYENAPLVLSKARDYASQQL 697 (699)
Q Consensus 678 ~~~~l~~al~~a~~~~~~~l 697 (699)
..++++++.+...+++...+
T Consensus 403 ~~~~l~~f~~~l~~~~~~~~ 422 (666)
T 2zxr_A 403 DEALFPAFKARVEAYAARFP 422 (666)
T ss_dssp CGGGHHHHHHHHHHHHHTSC
T ss_pred CcccHHHHHHHHHHHHHHhc
Confidence 67889999998888876543
No 20
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=25.73 E-value=1.3e+02 Score=28.02 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred ccCCCeee-eecCCcCChHHHHHhHHHHHHHHHHHhHhCCccc-ccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy6230 315 AWTGGRSE-GIPGSARRRPIMSNHTATHILNHALRFVLGPEAD-QKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRI 392 (699)
Q Consensus 315 l~~G~~V~-~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~-~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~ 392 (699)
+..|+.|+ ..+|..-|..-..+|-|++||.. .|- +. +.=-.-+|+.+.+-. +.+..+-++..++-+...-.
T Consensus 65 i~~~~kveniVfdYnG~~pErF~hraqlLlRe-----eGf-inftaY~tKtpghlhlyI-hkghttL~E~~ql~~~lS~k 137 (180)
T 2atz_A 65 ILRNDKVENIVFDYNGRNPERFYHKAQLLLRE-----EGF-MNFTAYNTKTPGHLHLYV-HKGHTELGEGERLVKTLSMK 137 (180)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHHHH-----TTC-CCEEEEECSSTTCEEEEE-CCCSEEHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEeCCCCHHHHHHHHHHHHHH-----hCc-ceeEeeccCCCCeEEEEE-ecCCccHHHHHHHHHHHHHH
Confidence 45678787 56899999999999999998752 231 11 111123577777744 33467778888888888899
Q ss_pred HHcCCCEEEEEcCHH
Q psy6230 393 VQTKKPVYAKLCSLA 407 (699)
Q Consensus 393 I~~~~~V~~~~~~~~ 407 (699)
.++.+|.+++..|-.
T Consensus 138 La~klpkeWr~fPs~ 152 (180)
T 2atz_A 138 LAQGLPKEWKVFPSN 152 (180)
T ss_dssp HHTTSCCCEEEESCT
T ss_pred HHhhCccceeeCCCc
Confidence 999999999877643
No 21
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=25.08 E-value=25 Score=26.05 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=8.7
Q ss_pred HHHHHHhhcCCCCCC
Q psy6230 653 WVRYLTDIMGGKGGG 667 (699)
Q Consensus 653 ~~k~~~~~l~GkGGG 667 (699)
+..+.+.++.|.|||
T Consensus 18 laeeaaklleggggg 32 (62)
T 2i7u_A 18 LAEEAAKLLEGGGGG 32 (62)
T ss_dssp HHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHhcCCCC
Confidence 455666777555443
No 22
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.83 E-value=81 Score=29.11 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHHHHH
Q psy6230 165 SGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEE 211 (699)
Q Consensus 165 tg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~I~~L~ee 211 (699)
.|.+|+++++..+.+..++. ..+..+. .++..++..|.++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a---~~Lk~~~----~~l~~~v~~l~~e 40 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREAS---SILRVEP----AKLPKTVERFFEE 40 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHH---HTTTCCT----TSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH---HHhCCCh----HHHHHHHHHHHHH
Confidence 38899999988865555544 4455432 2444555555554
No 23
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.70 E-value=1.3e+02 Score=18.89 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6230 549 LRNLLKTMKKSLDEAER 565 (699)
Q Consensus 549 l~~~~~~l~k~~~~l~k 565 (699)
|..+++.++.++..+.+
T Consensus 6 lykeledlqerlrklrk 22 (27)
T 3twe_A 6 LYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
Done!