RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6230
(699 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 317 bits (814), Expect = 4e-96
Identities = 139/369 (37%), Positives = 194/369 (52%), Gaps = 24/369 (6%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
RRR I NHTATH+LN AL+ VLG DQKGSLVA ++LRFDF++ MT +++++ E+
Sbjct: 589 DRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVES 648
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
V + PV AK LADAK+I GLRA+F E YPDPVRVV VG
Sbjct: 649 LVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGVY----------- 697
Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEV 507
S+E CGGTH++ F + SEE IAKGIRRI A++G A +AI A +E E
Sbjct: 698 ----SMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERE- 752
Query: 508 LNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
L + + L KK+ + + A +P KKE++R + ++K L A++
Sbjct: 753 ------LDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEA 806
Query: 568 KAAHASKVLDRVKSLVEERKAD--KFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFIS 625
A A + + L + + +V LD G + AL A ++V AA+ +S
Sbjct: 807 AALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLS 866
Query: 626 VDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLV 685
DE K+ +++VP V GL A W+ + + GG GGGK AQ G + E
Sbjct: 867 SDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAA 926
Query: 686 LSKARDYAS 694
L KAR +A
Sbjct: 927 LEKARAFAV 935
Score = 129 bits (327), Expect = 6e-31
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 88 IPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFC 147
I GLRA+F E YPDPVRVV VG S+E CGGTH++ F
Sbjct: 673 INGLRAVFGEKYPDPVRVVSVGGVY---------------SMELCGGTHVSNTAEAEAFK 717
Query: 148 ISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIID 207
+ SEE IAKGIRRI A++G A +AI A +E E L + + L KK+
Sbjct: 718 LLSEEGIAKGIRRITAVTGGAAVEAINAADSLERE-------LDSALKVEGSDLEKKVAS 770
Query: 208 ITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKAD-- 265
+ + A +P KKE++R + ++K L A++ A A + + L + +
Sbjct: 771 LKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGK 830
Query: 266 KFIVEILDAGSNTK 279
+V LD G +
Sbjct: 831 SVLVARLDVGVDAA 844
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 248 bits (636), Expect = 2e-71
Identities = 116/370 (31%), Positives = 182/370 (49%), Gaps = 48/370 (12%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
RRR I NH+ATH+L+ ALR VLG Q GSLVAPDRLRFDF++ A+T ++++K E
Sbjct: 544 ERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIED 603
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
V ++ PV + S+ +AKK G A+F E Y D VRVV +G
Sbjct: 604 LVNEKIRENLPVETEEMSIEEAKK-MGAMALFGEKYGDEVRVVSIG-------------- 648
Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEV 507
+ S+E CGGTH++ +G F I SE +A G+RRI A++G A + + + E +
Sbjct: 649 --DFSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQ---EALL 703
Query: 508 LNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
+ L L +++ + EE LK ++K L++ +
Sbjct: 704 KELAALLKAK----PSELPERVEALLEE-----------------LKELEKELEQLKAKL 742
Query: 568 KAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVD 627
AA A +L + K E K + ++ G + KAL +K + +V+
Sbjct: 743 AAAAAGDLLAQAK----EVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLATVE 797
Query: 628 EAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLS 687
+ K+ + +V K+ GL A D V+ L I+GGKGGG+ + AQA G + L+
Sbjct: 798 D--GKVSLVVAVTKDLTDKGLKAGDLVKELAKIVGGKGGGRPDMAQAGGKDPAKLDEALA 855
Query: 688 KARDYASQQL 697
+++ + +L
Sbjct: 856 AVKEWLAAKL 865
Score = 83.6 bits (208), Expect = 1e-16
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 44/182 (24%)
Query: 93 AMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEE 152
A+F E Y D VRVV +G + S+E CGGTH++ +G F I SE
Sbjct: 632 ALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVSNTGDIGLFKIVSES 675
Query: 153 AIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEI 212
+A G+RRI A++G A + + + E + + L L +++ + EE
Sbjct: 676 GVAAGVRRIEAVTGEAALEYLNEQ---EALLKELAALLKAK----PSELPERVEALLEE- 727
Query: 213 AKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEIL 272
LK ++K L++ + AA A +L + K E K + +
Sbjct: 728 ----------------LKELEKELEQLKAKLAAAAAGDLLAQAK----EVNGVKVLAAQV 767
Query: 273 DA 274
+
Sbjct: 768 EG 769
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 243 bits (623), Expect = 1e-69
Identities = 117/370 (31%), Positives = 186/370 (50%), Gaps = 48/370 (12%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
RRR +M NHTATH+L+ ALR VLG Q GSLV P++LRFDF++ A+TA+++K+ E
Sbjct: 558 ERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIER 617
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
V I++ PV + L +AK KG A+F E Y D VRVV +G
Sbjct: 618 LVNEIIRENLPVKTEEMDLDEAKA-KGAMALFGEKYGDEVRVVEIG-------------- 662
Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEV 507
+ SVE CGGTH++ +G F I SEE IA G+RRI A++G A + +++ + ++
Sbjct: 663 --DFSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQE----DL 716
Query: 508 LNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
L + +L K ++ ++ E L LK ++K L+ ++
Sbjct: 717 L-----------KEIASLLKVPPELLPKV----------ERLLEELKELEKELERLKKKL 755
Query: 568 KAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVD 627
AA + +L K EE K + + +D G++ K L +K + SV
Sbjct: 756 AAAELADLLSNAK--AEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIVLASVA 812
Query: 628 EAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLS 687
+ K+ + +V K ++ + A + V+ L I+GGKGGG+ + AQ G + E L
Sbjct: 813 DG--KVSLVVAVSK-DLTDKVKAGELVKELAAIVGGKGGGRPDMAQGGGKDPEKLDEALE 869
Query: 688 KARDYASQQL 697
++ ++L
Sbjct: 870 LVIEWVKEKL 879
Score = 91.2 bits (227), Expect = 7e-19
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 43/188 (22%)
Query: 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 149
G A+F E Y D VRVV +G + SVE CGGTH++ +G F I
Sbjct: 643 GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGTHVSNTGDIGLFKII 686
Query: 150 SEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDIT 209
SEE IA G+RRI A++G A + +++ + ++L + +L K ++
Sbjct: 687 SEEGIAAGVRRIEAVTGEAALEYLQEQE----DLL-----------KEIASLLKVPPELL 731
Query: 210 EEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIV 269
++ E L LK ++K L+ ++ AA + +L K EE K +
Sbjct: 732 PKV----------ERLLEELKELEKELERLKKKLAAAELADLLSNAK--AEEIGGVKVLA 779
Query: 270 EILDAGSN 277
+ +D
Sbjct: 780 KEVDGADM 787
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 191 bits (488), Expect = 2e-51
Identities = 112/353 (31%), Positives = 169/353 (47%), Gaps = 54/353 (15%)
Query: 327 SARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAE 386
RR IM NH+ATH+L+ AL+ VLG Q GSLV+ +LRFDF++ A+T ++++K E
Sbjct: 550 EKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIE 609
Query: 387 AEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQ 446
V + P+ L +AK A+F E Y + VRVV VG
Sbjct: 610 DLVNEQILANIPIKVIFMDLDEAKAKGAF-ALFGEKYGEKVRVVSVG------------- 655
Query: 447 AGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETE 506
+ SVE CGGTH+ +G F I E IA G+RRI A++GN AI+ E +
Sbjct: 656 ---DVSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNA---AIEYLNEQEDK 709
Query: 507 VLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERL 566
+ + + L L KKI EE WK L+ L+++K +
Sbjct: 710 LKELADILKV----TPNELPKKIERFFEE--------WK--ALQKELESLKLKI------ 749
Query: 567 QKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAA---LKQVKTSAPHMAAMF 623
A + +D +K E K +VE++DA + K+L LK SA ++ A F
Sbjct: 750 -----ADQKIDELKDKAETINGVKVLVEVVDA-KDMKSLKTMADRLKSKLGSAIYVLASF 803
Query: 624 ISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASG 676
A K+ + V + ++ G+ A + + + ++GGKGGG+ + AQA G
Sbjct: 804 -----ANGKVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKGGGRPDLAQAGG 851
Score = 82.0 bits (203), Expect = 5e-16
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 93 AMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEE 152
A+F E Y + VRVV VG + SVE CGGTH+ +G F I E
Sbjct: 639 ALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEIGLFKIVKES 682
Query: 153 AIAKGIRRIVALSGNEATKAIKKAQVIETEVLN-VKNTLSN-PNTADS-----KALSKKI 205
IA G+RRI A++GN A + + + + E+ + +K T + P + KAL K++
Sbjct: 683 GIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKEL 742
Query: 206 IDITEEIAKATLPYWKK-----EDLRNLLKT-----MKKSLDEAERLQKAAHASKVL 252
+ +IA + K ++ L++ MK A+RL+ ++ +
Sbjct: 743 ESLKLKIADQKIDELKDKAETINGVKVLVEVVDAKDMKSLKTMADRLKSKLGSAIYV 799
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 116 bits (294), Expect = 6e-27
Identities = 96/398 (24%), Positives = 152/398 (38%), Gaps = 89/398 (22%)
Query: 318 GGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAM 377
G G RR +M +HTATHI+ A R VLG Q G+ D+ R D T+ +
Sbjct: 574 GDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRI 633
Query: 378 TADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETY-----PDPV-RVVC 431
T ++VK+ E IV +PV + +A++ G R Y P RVV
Sbjct: 634 TREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFR-----LYQGGVPPGKTIRVVE 688
Query: 432 VGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGN 491
+G + VE CGGTH++ +G I E I G+ R+ +G
Sbjct: 689 IG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAG- 731
Query: 492 EATKAIKKAQVIETEVLNVKNTLSN-----PNTADS-----KALSKKIIDITEEIAKATL 541
A++ Q +E + L P T + K K+I + +E+A+
Sbjct: 732 --DAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLA 789
Query: 542 PYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSN 601
+ L +AE + K +VE +DA +
Sbjct: 790 ---------------SELLSKAEEVGGV--------------------KVVVEEVDADED 814
Query: 602 T--KALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTD 659
K + K+ K A+ + + + + V+AG + VR L
Sbjct: 815 ELRKIANELAKEGKV------ALVVLGNGGGQ--IVVGVGEDVGVNAG----EIVRELAK 862
Query: 660 IMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL 697
++GGKGGGK + AQ GP+ + L A++ + L
Sbjct: 863 VLGGKGGGKPDLAQGGGPDPKKKEEALEAAKEVLKEAL 900
Score = 44.1 bits (105), Expect = 2e-04
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 129 VEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKN 188
VE CGGTH++ +G I E I G+ R+ +G A++ Q +E +
Sbjct: 694 VEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAG---DAAVEYIQELEDLLKEAAE 750
Query: 189 TLSN-----PNTADS-----KALSKKIIDITEEIAKATL--PYWKKEDLRNLLKTMKKSL 236
L P T + K K+I + +E+A+ K E++ + +++
Sbjct: 751 ILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEVGGVKVVVEEVD 810
Query: 237 DEAERLQKAAHASKVLDRVKSLVEERKADKFIV 269
+ + L+K A+ +V +V + +V
Sbjct: 811 ADEDELRKIANELAKEGKVALVVLGNGGGQIVV 843
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 115 bits (291), Expect = 1e-26
Identities = 94/379 (24%), Positives = 154/379 (40%), Gaps = 56/379 (14%)
Query: 318 GGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAM 377
G +G RR +M +HTATH+L A R VLG Q G+ D+ R D T+ +
Sbjct: 578 GDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRI 637
Query: 378 TADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYP--DPVRVVCVGTP 435
+ +++K+ E RIV +PV K +A++ G R ++ P +RVV +
Sbjct: 638 SEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFR-LYQGGVPPGREIRVVEIE-- 694
Query: 436 VEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATK 495
+ V+ CGGTH +G I E I G+ RI +G A +
Sbjct: 695 --------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALE 740
Query: 496 AIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKT 555
I++ + + E ++ K + E K WK + R ++
Sbjct: 741 YIQELEDLLRESSDI---------------LKVPPEQLPETVKRFFEEWK--EQRKEIER 783
Query: 556 MKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTS 615
+KK L E + + + A ++ + IVE++DA + + A K +
Sbjct: 784 LKKKLAELKIYELISEAERIGGV-----------EVIVELVDA-DMDELQEIAEKLAEKG 831
Query: 616 APHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQAS 675
+ +S ++ SS K V AG + VR + +GG GGGK + AQ
Sbjct: 832 L---VVVLVSGGGGNGRVVI-SSGEKAGVDAG----ELVREIAKELGGGGGGKPDLAQGG 883
Query: 676 GPNYENAPLVLSKARDYAS 694
GP+ N L K + +
Sbjct: 884 GPDDLNVDEALEKIKSFLR 902
Score = 40.0 bits (94), Expect = 0.005
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 18/137 (13%)
Query: 129 VEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKN 188
V+ CGGTH +G I E I G+ RI +G A + I++ + + E ++
Sbjct: 698 VQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESSDI-- 755
Query: 189 TLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHA 248
K + E K WK + R ++ +KK L E + + + A
Sbjct: 756 -------------LKVPPEQLPETVKRFFEEWK--EQRKEIERLKKKLAELKIYELISEA 800
Query: 249 SKVLDRVKSLVEERKAD 265
++ V+ +VE AD
Sbjct: 801 ERI-GGVEVIVELVDAD 816
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 111 bits (280), Expect = 1e-25
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
Query: 337 HTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTK 396
HTATH+L+ ALR VLG QKGS + +RLRFDF++ MT D++KK E V ++
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 397 KPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFC 456
V ++ SL +A++ KG A+F E Y D V+V + S E C
Sbjct: 517 LSVKKEVMSLEEARE-KGAMALFGEKYEDIVKVYEIDG----------------FSKEVC 559
Query: 457 GGTHLAMAHHVGDFCISSEEAIAKGIRRIVAL 488
GG H+ +G F I E++ + G+RRI A+
Sbjct: 560 GGPHVENTGELGTFKIQKEQSSSSGVRRIRAI 591
Score = 45.5 bits (108), Expect = 8e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 149
G A+F E Y D V+V + S E CGG H+ +G F I
Sbjct: 533 GAMALFGEKYEDIVKVYEIDG----------------FSKEVCGGPHVENTGELGTFKIQ 576
Query: 150 SEEAIAKGIRRIVAL 164
E++ + G+RRI A+
Sbjct: 577 KEQSSSSGVRRIRAI 591
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 65.5 bits (160), Expect = 8e-12
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 23/161 (14%)
Query: 329 RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388
RR M HTA H+L+ L V G A G + D R DF G T D++++ EA
Sbjct: 91 RRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDF--DGEDTEDEIEEVEAL 146
Query: 389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDP---VRVVCVGTPVEQLESEPES 445
+V+ PV +A+K+ GL + ++ PD +R+V +G
Sbjct: 147 ANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG------------ 194
Query: 446 QAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486
+ V+ CGGTH+ +G+ I E KG RR+
Sbjct: 195 ----DIDVQPCGGTHVKNTGEIGEIKILKTEKKGKGNRRVY 231
Score = 30.4 bits (69), Expect = 2.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 88 IPGLRAMFDETYPDP---VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVG 144
+PGL + ++ PD +R+V +G + V+ CGGTH+ +G
Sbjct: 170 LPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIG 213
Query: 145 DFCISSEEAIAKGIRRIV 162
+ I E KG RR+
Sbjct: 214 EIKILKTEKKGKGNRRVY 231
>gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain. This domain is often found
adjacent to the DHH domain pfam01368 and is called DHHA1
for DHH associated domain. This domain is diagnostic of
DHH subfamily 1 members. This domains is also found in
alanyl tRNA synthetase , suggesting that this domain may
have an RNA binding function. The domain is about 60
residues long and contains a conserved GG motif.
Length = 69
Score = 49.9 bits (120), Expect = 6e-08
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 620 AAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNY 679
+ E K+ + K G + ++ + + +GG GGG ++A A G +
Sbjct: 1 DKPVVLFAEEDGKVKVSARSSKGLDVKGG---ELLKEVAEKLGGGGGGHPDAAGAGGKDP 57
Query: 680 ENAPLVLSKARD 691
L ++
Sbjct: 58 SKLEEALELLKE 69
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 47.8 bits (115), Expect = 1e-07
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 103 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 162
VRVV +G + V+ CGGTH+ +G F I ++ KG++RI
Sbjct: 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRIY 44
Score = 47.8 bits (115), Expect = 1e-07
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 427 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIV 486
VRVV +G + V+ CGGTH+ +G F I ++ KG++RI
Sbjct: 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRIY 44
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 47.8 bits (115), Expect = 2e-07
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 103 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 161
VRVV +G + SVE CGGTH+ +G F I S G++RI
Sbjct: 1 VRVVSIG----------------DFSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
Score = 47.8 bits (115), Expect = 2e-07
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 427 VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 485
VRVV +G + SVE CGGTH+ +G F I S G++RI
Sbjct: 1 VRVVSIG----------------DFSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 37.2 bits (87), Expect = 0.004
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 524 ALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV 583
L K+I DI + K LP + + L+ +KK L++AER +K +K V+
Sbjct: 1 KLKKQIRDIERLLKKKDLPADVRVEKERALEALKKELEDAERRKKRKKMAKKYHMVR-FF 59
Query: 584 EERKADKFIVEI---LDAGSNTKALDAALKQVKTS 615
E +KA + + ++ L+ S+ K + +Q+ +
Sbjct: 60 ERKKATRRLKQLEKKLEETSDEKEIKDLKEQLSKA 94
Score = 33.7 bits (78), Expect = 0.071
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 200 ALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV 259
L K+I DI + K LP + + L+ +KK L++AER +K +K V+
Sbjct: 1 KLKKQIRDIERLLKKKDLPADVRVEKERALEALKKELEDAERRKKRKKMAKKYHMVR-FF 59
Query: 260 EERKADKFI 268
E +KA + +
Sbjct: 60 ERKKATRRL 68
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 34.8 bits (81), Expect = 0.16
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 170 TKAIKKAQ------VIETEVLNVKNTLSNPNTADSKALSKKI-------IDITEEIAKAT 216
T ++ A+ ++E + L TL+ + L K++ + E IA+
Sbjct: 312 TDFLEHAREQNKQLLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVERIAEKK 371
Query: 217 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV-EERKA 264
+ Y +L+ L+ ++K L+E E+ Q+ ++ + ++ L +E +A
Sbjct: 372 VAY---SELQEELEEIEKQLEEIEKEQE-----ELSESLQGLRKDELEA 412
Score = 34.8 bits (81), Expect = 0.16
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 494 TKAIKKAQ------VIETEVLNVKNTLSNPNTADSKALSKKI-------IDITEEIAKAT 540
T ++ A+ ++E + L TL+ + L K++ + E IA+
Sbjct: 312 TDFLEHAREQNKQLLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVERIAEKK 371
Query: 541 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV-EERKA 588
+ Y +L+ L+ ++K L+E E+ Q+ ++ + ++ L +E +A
Sbjct: 372 VAY---SELQEELEEIEKQLEEIEKEQE-----ELSESLQGLRKDELEA 412
>gnl|CDD|218676 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 peptidases
are well-studied proteases found in a wide range of
organisms including mammals and bacteria. In mammals
they participate in processes such as cardiovascular
development, blood-pressure regulation, nervous control
of respiration, and regulation of the function of
neuropeptides in the central nervous system. In bacteria
they may be used for digestion of milk.
Length = 380
Score = 34.2 bits (79), Expect = 0.21
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 189 TLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTM-KKSLDEAERLQKAAH 247
L+ + +++ ++ ++ ++AKA+ W +E+LR+ K +L E LQ A
Sbjct: 167 KLAGLDEDEAEKAAEDVVAFETKLAKAS---WSREELRDPAKLYNPMTLAE---LQALAP 220
Query: 248 ASKVLDRVKSLVEERKADKFIV 269
+ +L + D+ IV
Sbjct: 221 GLDWKRYLSALGLPKDPDEVIV 242
Score = 34.2 bits (79), Expect = 0.21
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 513 TLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTM-KKSLDEAERLQKAAH 571
L+ + +++ ++ ++ ++AKA+ W +E+LR+ K +L E LQ A
Sbjct: 167 KLAGLDEDEAEKAAEDVVAFETKLAKAS---WSREELRDPAKLYNPMTLAE---LQALAP 220
Query: 572 ASKVLDRVKSLVEERKADKFIV 593
+ +L + D+ IV
Sbjct: 221 GLDWKRYLSALGLPKDPDEVIV 242
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 34.2 bits (79), Expect = 0.25
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 189 TLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKK-SLDEAERLQKAAH 247
L+ + D++AL+++++ E+AK + W +E+ R+ KT +L E LQK A
Sbjct: 141 VLAGEDEEDAEALAEEVLAFETELAKIS---WSEEERRDPEKTYNPMTLAE---LQKLAP 194
Query: 248 ASKVLDRVKSLVEERKADKFIV 269
+++L + +K IV
Sbjct: 195 GIDWKAYLEALGLPSEDEKVIV 216
Score = 34.2 bits (79), Expect = 0.25
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 513 TLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKK-SLDEAERLQKAAH 571
L+ + D++AL+++++ E+AK + W +E+ R+ KT +L E LQK A
Sbjct: 141 VLAGEDEEDAEALAEEVLAFETELAKIS---WSEEERRDPEKTYNPMTLAE---LQKLAP 194
Query: 572 ASKVLDRVKSLVEERKADKFIV 593
+++L + +K IV
Sbjct: 195 GIDWKAYLEALGLPSEDEKVIV 216
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 34.3 bits (78), Expect = 0.26
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 504 ETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEA 563
E E N+ + + SK + I DI E+ K + ++ D+ ++ K ++K+L +A
Sbjct: 1275 EMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDA 1334
Query: 564 ER--------LQKAAHASKV--LDRVKSLVEERKADKFIVEILDAGSNTKA-LDAALKQV 612
++ L + A+ + L+++K +++E K ++ EI + N K LD + K +
Sbjct: 1335 QKHNSDINLYLNEIANIYNILKLNKIKKIIDEVK--EYTKEIEENNKNIKDELDKSEKLI 1392
Query: 613 KT 614
K
Sbjct: 1393 KK 1394
Score = 33.1 bits (75), Expect = 0.75
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 180 ETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEA 239
E E N+ + + SK + I DI E+ K + ++ D+ ++ K ++K+L +A
Sbjct: 1275 EMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDA 1334
Query: 240 ER--------LQKAAHASKV--LDRVKSLVEERK 263
++ L + A+ + L+++K +++E K
Sbjct: 1335 QKHNSDINLYLNEIANIYNILKLNKIKKIIDEVK 1368
>gnl|CDD|218006 pfam04286, DUF445, Protein of unknown function (DUF445). Predicted
to be a membrane protein.
Length = 366
Score = 33.4 bits (77), Expect = 0.41
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 20/152 (13%)
Query: 152 EAIAKGIRRIVA---LSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADS------KALS 202
+ IA+ + R V L+ + +++A E + L+ P A+ + L+
Sbjct: 38 DRIAENLGRFVEEHLLTPEVIARKLREADPAER----LGRWLAQPTNAERLARLVARLLA 93
Query: 203 KKIIDITEE-----IAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKS 257
+ + +E + KA ++ D LL + + L R Q +LDR++
Sbjct: 94 GILEALDDERLQRFLKKALRRRLEEIDPAPLLGKLLELLLADGRHQALL--DLLLDRLRD 151
Query: 258 LVEERKADKFIVEILDAGSNTKIPRLRSFEFG 289
++ + I E++D P
Sbjct: 152 WLKSEEGKARIAEMIDEFLERWGPTWLLGGIA 183
Score = 32.2 bits (74), Expect = 0.83
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 27/164 (16%)
Query: 476 EAIAKGIRRIVA---LSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADS------KALS 526
+ IA+ + R V L+ + +++A E + L+ P A+ + L+
Sbjct: 38 DRIAENLGRFVEEHLLTPEVIARKLREADPAER----LGRWLAQPTNAERLARLVARLLA 93
Query: 527 KKIIDITEE-----IAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKS 581
+ + +E + KA ++ D LL + + L R Q +LDR++
Sbjct: 94 GILEALDDERLQRFLKKALRRRLEEIDPAPLLGKLLELLLADGRHQALL--DLLLDRLRD 151
Query: 582 LVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFIS 625
++ + I E++D L +A MF+
Sbjct: 152 WLKSEEGKARIAEMIDEFLERWGPTWLLG-------GIAEMFLR 188
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 33.2 bits (76), Expect = 0.48
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 379 ADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDET---YPDP 426
+ ++KA+ E+ R++Q + P Y D K++K L +E+ YP P
Sbjct: 309 PEALRKAQEELDRVLQGRPPTY------EDIKELKYLTRCINESMRLYPHP 353
>gnl|CDD|202551 pfam03142, Chitin_synth_2, Chitin synthase. Members of this family
are fungal chitin synthase EC:2.4.1.16 enzymes. They
catalyze chitin synthesis as follows:
UDP-N-acetyl-D-glucosamine +
{(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP +
{(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length = 527
Score = 33.2 bits (76), Expect = 0.49
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 33 IVFFSIYLLSVPSMYLLLILYSLINLNVVSWG-TREVAVKKTKKVDLTST 81
+ + IYLL++P +L Y+ + + SWG TR V +K KK
Sbjct: 459 VGWMIIYLLALPIWNFVLPSYAFWHFDDFSWGDTRVVEGEKKKKAHGEDE 508
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 32.2 bits (74), Expect = 0.74
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 26 YLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWG 64
+LI I+ F I L PS + LL+L +L+ L + S G
Sbjct: 122 FLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVG 160
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms].
Length = 363
Score = 32.3 bits (74), Expect = 0.76
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 176 AQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKS 235
AQ++E + P+ A + L++ II+ + LRNL+ ++
Sbjct: 154 AQLLERAL---------PDEAL-RELTQLIIEEADR-------------LRNLVDRLEVL 190
Query: 236 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVE 270
+ + + +VL+RV++LVE AD +
Sbjct: 191 GPQRPGDRVPVNIHEVLERVRALVEAEFADNVRLI 225
Score = 32.3 bits (74), Expect = 0.76
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 500 AQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKS 559
AQ++E + P+ A + L++ II+ + LRNL+ ++
Sbjct: 154 AQLLERAL---------PDEAL-RELTQLIIEEADR-------------LRNLVDRLEVL 190
Query: 560 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVE 594
+ + + +VL+RV++LVE AD +
Sbjct: 191 GPQRPGDRVPVNIHEVLERVRALVEAEFADNVRLI 225
>gnl|CDD|226805 COG4365, COG4365, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 537
Score = 31.8 bits (72), Expect = 1.5
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 201 LSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVE 260
L K +D+ ++ + KE L L T+ + E E H +L+RVK +
Sbjct: 151 LHKLTLDVPPKVPTVSRVTLDKEWLAEWLATVFRFEAETE------HTDALLERVKRAIA 204
Query: 261 ER 262
E
Sbjct: 205 ES 206
Score = 31.8 bits (72), Expect = 1.5
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 525 LSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVE 584
L K +D+ ++ + KE L L T+ + E E H +L+RVK +
Sbjct: 151 LHKLTLDVPPKVPTVSRVTLDKEWLAEWLATVFRFEAETE------HTDALLERVKRAIA 204
Query: 585 ER 586
E
Sbjct: 205 ES 206
>gnl|CDD|238544 cd01124, KaiC, KaiC is a circadian clock protein primarily found in
cyanobacteria KaiC is a RecA-like ATPase, having both
Walker A and Walker B motifs. A related protein is found
in archaea.
Length = 187
Score = 30.4 bits (69), Expect = 2.0
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 224 DLRNLLKTMKKSLDEAERLQKAAHASKVL----DRVKSLVEERKADKFIV----EILDAG 275
DL L ++ +A+ + S + R+K +EE KA + ++ +L
Sbjct: 52 DLERLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLME 111
Query: 276 SNTKIPRLRSFEFGLKRQ 293
+T +R F LKR
Sbjct: 112 QSTARLEIRRLLFALKRF 129
>gnl|CDD|220629 pfam10199, Adaptin_binding, Alpha and gamma adaptin binding protein
p34. p34 is a protein involved in membrane trafficking.
It is known to interact with both alpha and gamma
adaptin. It has been speculated that p34 may play a
chaperone role such as preventing the soluble adaptors
from co-assembling with soluble clathrin, or helping to
remove the adaptors from the coated vesicle. Another
possible function is in aiding the recruitment of
soluble adaptors onto the membrane.
Length = 101
Score = 29.0 bits (65), Expect = 2.3
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 157 GIRRIV-ALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKA 215
GI RIV AL ++ + K + S+ + DS SK ++E
Sbjct: 4 GIERIVEALETHDWSNMELKDGDGIDLEEEKEGLKSSDDQGDSLEPSKS----SQEEDDD 59
Query: 216 TLPYWKKEDLRNLLKTMK------KSLDEAERLQKAA 246
ED NLL ++ SL + ER + AA
Sbjct: 60 GDEELDVEDFENLLTKLQQARDMTASLPDEERKKFAA 96
Score = 29.0 bits (65), Expect = 2.3
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 481 GIRRIV-ALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKA 539
GI RIV AL ++ + K + S+ + DS SK ++E
Sbjct: 4 GIERIVEALETHDWSNMELKDGDGIDLEEEKEGLKSSDDQGDSLEPSKS----SQEEDDD 59
Query: 540 TLPYWKKEDLRNLLKTMK------KSLDEAERLQKAA 570
ED NLL ++ SL + ER + AA
Sbjct: 60 GDEELDVEDFENLLTKLQQARDMTASLPDEERKKFAA 96
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 30.7 bits (70), Expect = 2.6
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKA 604
KK L +LLK + K ER + A +++ V+ + E + L +
Sbjct: 37 KKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTP-ELEAAGLWERLAFEK 95
Query: 605 LDAAL--KQVKTSAPHMAAMFIS--VDEAAKKIFCLSSVP 640
+D L +++ + H I D F P
Sbjct: 96 IDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGP 135
Score = 29.9 bits (68), Expect = 4.7
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTK 279
KK L +LLK + K ER + A +++ V+ + E E+ AG +
Sbjct: 37 KKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTP-----ELEAAGLWER 90
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 29.9 bits (68), Expect = 2.8
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 28/143 (19%)
Query: 491 NEATKAIKKAQVIETEVL----NVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKK 546
+ IK I + + N+ + + A+ L K I ++ EI K
Sbjct: 42 EDRLLPIKWLGEIRSNLREIRANLLELILTTDPAERDELLKDIEELRAEIDK-------- 93
Query: 547 EDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEE-RKADKFIVEILDAGSNTKAL 605
L K K L E E+ K+ + K ++ RK ++++ AG N +A
Sbjct: 94 ----LLKKYEKTILTEEEK--------KLFNEFKEQLKAYRKVRNKVLDLAKAGKNDEAY 141
Query: 606 DAALKQVKTSAPHMAAMFISVDE 628
L +++ P A+ ++DE
Sbjct: 142 ALYLTELE---PARDAVIEALDE 161
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 30.6 bits (70), Expect = 2.9
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 170 TKAIKKAQ------VIETEVLNVKNTLSNPNTADSKALSKKI-------IDITEEIAKAT 216
++ A+ E + + TL+ + L K++ +ITE IA+
Sbjct: 316 PDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375
Query: 217 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV-EERKA 264
+ Y +L+ L+ + K L+E E+ Q+ K+ + ++ L +E +A
Sbjct: 376 IAY---SELQEELEEILKQLEEIEKEQE-----KLSEMLQGLRKDELEA 416
Score = 30.6 bits (70), Expect = 2.9
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 494 TKAIKKAQ------VIETEVLNVKNTLSNPNTADSKALSKKI-------IDITEEIAKAT 540
++ A+ E + + TL+ + L K++ +ITE IA+
Sbjct: 316 PDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375
Query: 541 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV-EERKA 588
+ Y +L+ L+ + K L+E E+ Q+ K+ + ++ L +E +A
Sbjct: 376 IAY---SELQEELEEILKQLEEIEKEQE-----KLSEMLQGLRKDELEA 416
>gnl|CDD|236671 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II;
Provisional.
Length = 283
Score = 30.5 bits (69), Expect = 3.0
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 394 QTKKPVYAKLCSLADAKKIKG-LRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETS 452
Q + + +L S+A A K+ + ++ E D VC TP ++P++ +
Sbjct: 116 QGVRAILGQLVSVAMAAKLTAKVAQLYGERLDDFPEYVCFPTPERLAAADPQALKALGMP 175
Query: 453 VEFCGG-THLAMAHHVGDFCISSEEAIAKGIRRIVALSG 490
++ HLA A G ++ + + ++ + G
Sbjct: 176 LKRAEALIHLANAALEGTLPLTIPGDVEQAMKTLQTFPG 214
>gnl|CDD|223814 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Lipid metabolism].
Length = 385
Score = 30.3 bits (69), Expect = 3.3
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 583 VEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKE 642
V R DKF V L AG N ++ +Q++ P + DE+A K +P
Sbjct: 20 VIRRNPDKFEVVALAAGKN---VELLAEQIREFKPKYVVI---ADESAAKELE-DLLPGT 72
Query: 643 AVSAGLTAID 652
V G +
Sbjct: 73 EVLVGEEGLC 82
>gnl|CDD|227612 COG5293, COG5293, Predicted ATPase [General function prediction
only].
Length = 591
Score = 30.7 bits (69), Expect = 3.4
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 158 IRRIVALSGNEATKAIKKAQVIE-TEVLNVKNTLSNPNTADSKALSKKIID-ITEEIAKA 215
I + +L E T+ K+ +V + LN + A A ++++++ + E IA+
Sbjct: 220 IGSLDSLEEIETTELRKQDEVNKKQATLNTFD-----FHAQDYAETEELVNTVDERIAEL 274
Query: 216 TLPYWKKEDLRNLLKTMKKSLDEAE 240
+ +KT K
Sbjct: 275 NNRRISMQSHWKRVKTSLKEQILFC 299
Score = 30.7 bits (69), Expect = 3.4
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 482 IRRIVALSGNEATKAIKKAQVIE-TEVLNVKNTLSNPNTADSKALSKKIID-ITEEIAKA 539
I + +L E T+ K+ +V + LN + A A ++++++ + E IA+
Sbjct: 220 IGSLDSLEEIETTELRKQDEVNKKQATLNTFD-----FHAQDYAETEELVNTVDERIAEL 274
Query: 540 TLPYWKKEDLRNLLKTMKKSLDEAE 564
+ +KT K
Sbjct: 275 NNRRISMQSHWKRVKTSLKEQILFC 299
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms this
enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 380
Score = 30.0 bits (68), Expect = 4.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 572 ASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQV 612
A + L++ ++L + +FI +DA N +AL A LK+
Sbjct: 28 ADRSLEKAQALAAPKLGLRFIAIAVDA-DNYEALVALLKEG 67
>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human
class 1 and 2 (h_1_2)-like subfamily; composed of
proteins similar to human GRXs, approximately 10 kDa in
size, and proteins containing a GRX or GRX-like domain.
GRX is a glutathione (GSH) dependent reductase,
catalyzing the disulfide reduction of target proteins
such as ribonucleotide reductase. It contains a redox
active CXXC motif in a TRX fold and uses a similar
dithiol mechanism employed by TRXs for intramolecular
disulfide bond reduction of protein substrates. Unlike
TRX, GRX has preference for mixed GSH disulfide
substrates, in which it uses a monothiol mechanism where
only the N-terminal cysteine is required. The flow of
reducing equivalents in the GRX system goes from NADPH
-> GSH reductase -> GSH -> GRX -> protein substrates. By
altering the redox state of target proteins, GRX is
involved in many cellular functions including DNA
synthesis, signal transduction and the defense against
oxidative stress. Different classes are known including
human GRX1 and GRX2, which are members of this
subfamily. Also included in this subfamily are the
N-terminal GRX domains of proteins similar to human
thioredoxin reductase 1 and 3.
Length = 82
Score = 27.9 bits (63), Expect = 4.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 577 DRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFI 624
R KSL++E +VE LD + + L++ T + +FI
Sbjct: 14 KRAKSLLKELGVKPAVVE-LDQHEDGSEIQDYLQE-LTGQRTVPNVFI 59
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 30.0 bits (68), Expect = 4.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 22 PDQVYLIEFFCIVFFSIYLLSVPS------MYLLLILYSLINL 58
P + LI F + F +YL + PS + ++ +LY L++L
Sbjct: 168 PYFIILIGSFFPIAFCLYLATKPSKKKILFILIIYLLYLLLSL 210
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 29.6 bits (67), Expect = 5.1
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 474 SEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDIT 533
+ + I K IR+ A G T + + +L + LS D K+ +I
Sbjct: 206 TPKQIKKKIRKA-ATDGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDD-----KLKEIY 259
Query: 534 EEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEER--KADKF 591
E L Y + KK+L E LQ+ +K + E R A++
Sbjct: 260 EAYKSGKLGYGE----------CKKAL--IEVLQEF---------LKEIQERRAEIAEEI 298
Query: 592 IVEILDAGSNTKALDAALKQVK 613
+ +IL+ G+ KA + A K +
Sbjct: 299 LDKILEPGAK-KARETANKTLA 319
Score = 28.8 bits (65), Expect = 8.7
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 150 SEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDIT 209
+ + I K IR+ A G T + + +L + LS D K+ +I
Sbjct: 206 TPKQIKKKIRKA-ATDGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDD-----KLKEIY 259
Query: 210 EEIAKATLPY--WKK---EDLRNLLKTMKKSLDEAERLQKAAH-ASKVLDRVKSLVEERK 263
E L Y KK E L+ LK ++ R + A K+L+ E
Sbjct: 260 EAYKSGKLGYGECKKALIEVLQEFLKEIQ-----ERRAEIAEEILDKILEPGAKKARE-T 313
Query: 264 ADKFIVEILDA 274
A+K + ++ A
Sbjct: 314 ANKTLADVYKA 324
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 29.7 bits (67), Expect = 5.6
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 337 HTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTK 396
H+A HIL A++ + G G V + +D ++ + ++K E E+ +I+
Sbjct: 77 HSAAHILAQAVKRLYGDVNLGVGP-VIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINEN 135
Query: 397 KPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA-GMETSVEF 455
+ S +A K +F E D ++ +E LE+ P ++ + EF
Sbjct: 136 IKIERVEVSREEAAK------LFQEMN-DRLK-------LELLEAIPSGESITLYKQGEF 181
Query: 456 ---CGGTHL 461
C G HL
Sbjct: 182 VDLCRGPHL 190
>gnl|CDD|180601 PRK06520, PRK06520,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase; Provisional.
Length = 368
Score = 29.7 bits (67), Expect = 6.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 355 ADQKGSLVAPD-----RLRFDFTNKGAMTADQVKKAEAEVIRIVQTKK 397
AD GS + P R +F G + A ++K E IR V K+
Sbjct: 10 ADVVGSFLRPAAIKQARQQFA---AGEIDAAALRKIEDMEIRKVVEKQ 54
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 28.3 bits (64), Expect = 6.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 560 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTS 615
LDE QK L K L ++ + + I+ GS++ L K++ TS
Sbjct: 66 LDEI---QKVPDWEDAL---KRLYDDGRNLRIIL----TGSSSLLL---SKEIATS 108
>gnl|CDD|220499 pfam09979, DUF2213, Uncharacterized protein conserved in bacteria
(DUF2213). Members of this family of bacterial proteins
comprise various hypothetical and phage-related
proteins. The exact function of these proteins has not,
as yet, been determined.
Length = 170
Score = 28.8 bits (65), Expect = 6.7
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 301 SHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTA 339
S GY T G ++G P A +R I NH A
Sbjct: 121 SCGYD----ADYD--QTPGVTDGQPYDAVQRDIRGNHVA 153
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 29.5 bits (67), Expect = 6.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 30 FFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWG 64
+ FFS +L +L L+ +S + N SW
Sbjct: 1 LSLLFFFSPFL-----FFLFLMFFSFLMFNNYSWS 30
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 29.3 bits (65), Expect = 7.4
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 174 KKAQVIETEV-LNVKNTLSNPNTADSKALSKKIIDITE--EIAKATLPYWKKEDLRNLLK 230
++ + I EV L + P S AL KK I TE E+ L + + L+N +
Sbjct: 356 ERYKTITNEVKLYCQGKYGTPPGKISSALRKKAIGRTEVIEVRPGDLLPNELDQLQNEIS 415
Query: 231 TMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGL 290
+ +L + + L A + + +E+RK ++ I E L S+ + S EF +
Sbjct: 416 DL--ALSDEDVLLYAMFP----EIGRQFLEQRKNNQLIPEPLLTQSSAPDNSVMS-EFDI 468
Query: 291 KRQTSPYHVKSHGYSYIEPCVEIC-AWTGGRSEGI 324
YHVK GY IE + C W G E +
Sbjct: 469 ILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEV 503
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.4 bits (67), Expect = 8.0
Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 32/154 (20%)
Query: 480 KGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKA 539
+G++R+ +K + + E E+ + + + +AL + I+ EE AK
Sbjct: 93 EGLQRV------RISKLSDEEEFFEAEIELLPDEPI-DEEREIEALVRSILSEFEEYAK- 144
Query: 540 TLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAG 599
E+L++L S+D+ +L D + + + + +K EIL+
Sbjct: 145 LNKKIPPEELQSL-----NSIDDPGKL---------ADTIAAHLPLKLEEKQ--EILETL 188
Query: 600 SNTKALDAALKQVKTSAPHMAAMFISVDEAAKKI 633
+ L+ L ++ I + + K+I
Sbjct: 189 DVKERLEKLLDLLEKE--------IDLLQLEKRI 214
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a
C-terminal EMAP domain [General function prediction
only].
Length = 219
Score = 28.7 bits (64), Expect = 8.6
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 150 SEEAIAKGIRRIVAL--SGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIID 207
+E+A+ IR I + G + +AI+ + IE+E+ ++ + P K + +
Sbjct: 13 AEKAVELFIRTIESGGFRGWDRKRAIEALKSIESELQALRYSYLEPEELVDTEQMKDLKE 72
Query: 208 ITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDR------------- 254
E I +A L K L++A+ ++ + LDR
Sbjct: 73 KAEGIVEA---------LGGEKDWSTKFLEQADEVRFFLNTILNLDRGEINDPVIAVDIV 123
Query: 255 ---VKSLVEERKADKFIVEILDAG 275
V S+ + ADK +V +++ G
Sbjct: 124 VGEVMSVGKHPNADKLLVTVVNIG 147
Score = 28.7 bits (64), Expect = 8.6
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 474 SEEAIAKGIRRIVAL--SGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIID 531
+E+A+ IR I + G + +AI+ + IE+E+ ++ + P K + +
Sbjct: 13 AEKAVELFIRTIESGGFRGWDRKRAIEALKSIESELQALRYSYLEPEELVDTEQMKDLKE 72
Query: 532 ITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDR------------- 578
E I +A L K L++A+ ++ + LDR
Sbjct: 73 KAEGIVEA---------LGGEKDWSTKFLEQADEVRFFLNTILNLDRGEINDPVIAVDIV 123
Query: 579 ---VKSLVEERKADKFIVEILDAG 599
V S+ + ADK +V +++ G
Sbjct: 124 VGEVMSVGKHPNADKLLVTVVNIG 147
>gnl|CDD|214437 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 28.3 bits (64), Expect = 9.5
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 20 LTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVS 62
L+P+ ++ F + F + + L LYS L++ S
Sbjct: 71 LSPNPLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSS 113
>gnl|CDD|234870 PRK00943, PRK00943, selenophosphate synthetase; Provisional.
Length = 347
Score = 29.0 bits (66), Expect = 9.6
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 605 LDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMG-G 663
L A K+ K H + C + P A + V +TD+ G G
Sbjct: 185 LTTAEKKSKLKPEHYGLA--------IEAMCQLNRP----GADFAKLPGVHAMTDVTGFG 232
Query: 664 KGGGKAESAQASG----PNYENAPLVLSKARDYASQ 695
G E Q +G +Y PL L +Y +Q
Sbjct: 233 LLGHLLEMCQGAGLTARVDYAAVPL-LPGVEEYIAQ 267
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.368
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,026,397
Number of extensions: 3465827
Number of successful extensions: 4760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4707
Number of HSP's successfully gapped: 137
Length of query: 699
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 595
Effective length of database: 6,324,786
Effective search space: 3763247670
Effective search space used: 3763247670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.3 bits)