RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6230
(699 letters)
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 171 bits (436), Expect = 4e-45
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
R M +H+ATH+L ++L+ VLG Q G+ + R D T+ + +++K+ E
Sbjct: 591 DVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEM 650
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFD--ETYPDPVRVVCVGTPVEQLESEPES 445
R + KP+ + +A++ K ++ +RVV VG
Sbjct: 651 LANREILANKPIKWEWMDRIEAER-KFGFRLYQGGVPPGRKIRVVQVG------------ 697
Query: 446 QAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSG 490
V+ CGGTH +G I E+I G+ R +G
Sbjct: 698 -----DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAG 737
Score = 63.0 bits (154), Expect = 2e-10
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 19/76 (25%)
Query: 93 AMFD--ETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISS 150
++ +RVV VG V+ CGGTH +G I
Sbjct: 679 RLYQGGVPPGRKIRVVQVGD-----------------DVQACGGTHCRSTGEIGMLKILK 721
Query: 151 EEAIAKGIRRIVALSG 166
E+I G+ R +G
Sbjct: 722 VESIQDGVIRFEFAAG 737
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 147 bits (374), Expect = 1e-40
Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 23/174 (13%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
RR M H H+L+ + G A+ G + + D G + +++AE
Sbjct: 89 ERRFDGMQQHLGQHLLSGCFYDLFG--ANTCGFHLGKEISTVDIV--GFLDEKTIREAEK 144
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
E R++ V + S + KK+ R + +R+V +
Sbjct: 145 EANRLIFENLEVKSYAPSKKELKKV-KTRRAL-PKTDEEIRIVEIV-------------- 188
Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQ 501
+ C G H + I E K RI ++GN A
Sbjct: 189 --GLDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSEGHHHH 239
Score = 60.3 bits (147), Expect = 3e-10
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 18/88 (20%)
Query: 90 GLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCIS 149
R + +R+V + + C G H + I
Sbjct: 170 KTRRAL-PKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVIKIR 212
Query: 150 SEEAIAKGIRRIVALSGNEATKAIKKAQ 177
E K RI ++GN A
Sbjct: 213 RWEKH-KNATRIEYVAGNRAVSEGHHHH 239
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 139 bits (352), Expect = 1e-38
Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 33/167 (19%)
Query: 330 RRPIMSNHTATHILNHALRFVLGPEADQ-KGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388
+ H+A H++ A+ VLG EA + V ++ + +++++ E
Sbjct: 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERL 61
Query: 389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDP---------VRVVCVGTPVEQL 439
V+ P+ +A+ MF E D ++VV +
Sbjct: 62 ANEKVKENAPIKIYELPREEAE------KMFGEDMYDLFPVPEDVRILKVVVIE------ 109
Query: 440 ESEPESQAGMETSVEFCGGTHLAMAHHVGDFCI-SSEEAIAKGIRRI 485
+ +V C H +G I +KG+ I
Sbjct: 110 ----------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
Score = 51.1 bits (123), Expect = 9e-08
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 26/80 (32%)
Query: 92 RAMFDETYPDP---------VRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHH 142
MF E D ++VV + + +V C H
Sbjct: 83 EKMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGE 126
Query: 143 VGDFCI-SSEEAIAKGIRRI 161
+G I +KG+ I
Sbjct: 127 IGPIKIRKVRFRKSKGLLEI 146
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 136 bits (345), Expect = 7e-37
Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 38/162 (23%)
Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQ-KGSLVAPDRLRFDFTNKGAMTADQVKKAE 386
R +M HT H+L H L VLG Q GS ++ ++ R+D + + ++
Sbjct: 90 DYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK-EQII 148
Query: 387 AEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQ 446
+ + V V ++ E R +
Sbjct: 149 SLFNKYVDEGGEV-----------------KIWWEGD---RRYTQIR------------- 175
Query: 447 AGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVAL 488
+ V CGGTH+ +G +I +G +R+
Sbjct: 176 ---DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 214
Score = 56.4 bits (137), Expect = 4e-09
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 19/72 (26%)
Query: 93 AMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEE 152
++ E R + + V CGGTH+ +G
Sbjct: 162 KIWWEGD---RRYTQIR----------------DFEVIPCGGTHVKDIKEIGHIKKLKRS 202
Query: 153 AIAKGIRRIVAL 164
+I +G +R+
Sbjct: 203 SIGRGKQRLEMW 214
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 129 bits (325), Expect = 2e-31
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 317 TGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGA 376
G G RR M +HT TH+L AL VLG Q GS + D R D ++
Sbjct: 593 EGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR 652
Query: 377 MTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFD--ETYPDPVRVVCVGT 434
++ +++ + E RIV + V + A++ G ++ +RVV +
Sbjct: 653 ISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE- 710
Query: 435 PVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSG 490
+ V+ CGGTHL VG I E I G+ RI+ G
Sbjct: 711 ---------------DWDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACG 751
Score = 54.3 bits (129), Expect = 1e-07
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 90 GLRAMFD--ETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFC 147
++ +RVV + + V+ CGGTHL VG
Sbjct: 689 YGFRLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIX 732
Query: 148 ISSEEAIAKGIRRIVALSG 166
I E I G+ RI+ G
Sbjct: 733 ILRTERIQDGVERIIFACG 751
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 88.2 bits (218), Expect = 5e-18
Identities = 99/610 (16%), Positives = 193/610 (31%), Gaps = 186/610 (30%)
Query: 91 LRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAM---AHHVGDF- 146
L+ F++ P+P T + EP + A E +F G +++ VG F
Sbjct: 33 LQEQFNKILPEP-------TEGFAADDEPTTPA--ELVGKFLG--YVSSLVEPSKVGQFD 81
Query: 147 -CISS-----EEAIAKG--IRRIVA-LSGNEATKAIKKAQVIET--EVLNVKNTLSNPNT 195
++ E +G I + A L T +K ++I+ +
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKK 140
Query: 196 ADSKALSKKIIDITEEIAK---------ATLPYWKKEDLRNLLKTMKKSLDE-----AER 241
++S AL + + E A+ T Y+ E+LR+L +T + + AE
Sbjct: 141 SNS-ALFRA---VGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAET 194
Query: 242 LQKAAHA--------SKVLDRVKSLVE--ERKADKFIVEILDAGSNTKIPRLRSFEF-GL 290
L + ++ L+ + +E D + L + IP S G+
Sbjct: 195 LSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPD---KDYLLS-----IP--ISCPLIGV 243
Query: 291 KRQTSPYHV--KSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALR 348
Q + Y V K G++ E + T G S+G+ + I + +
Sbjct: 244 I-QLAHYVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTAV---AIAETDSWESFFVSVRK 298
Query: 349 -----FVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKL 403
F +G + P+ ++ ++ +
Sbjct: 299 AITVLFFIGVRCYE----AYPNT---------SLPPSILEDSLEN--------------- 330
Query: 404 CSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAM 463
+E P P+ + EQ++ +T+ G + +
Sbjct: 331 ----------------NEGVPSPM-LSISNLTQEQVQDYVN-----KTNSHLPAGKQVEI 368
Query: 464 A------HHVGDFCIS----SEEAIAKGIRRIVALSGNEATKAI--KKAQVIETEVLNVK 511
+ + V +S S + +R+ A SG + ++ ++ L V
Sbjct: 369 SLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV- 423
Query: 512 NTLSNPNTA--DSKALSKKIIDITEEIAKATLPYWKKE------------DLRNLLKTMK 557
+ S L I +++ K + + K+ DLR L ++
Sbjct: 424 -------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 558 KSL-DEAERL----QKAAH--ASKVLD-------RVKSLVEERKADKFIVEILDAGS--N 601
+ + D RL + A+ +LD + L R D V ++ AG+
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNKDGTGVRVIVAGTLDI 535
Query: 602 TKALDAALKQ 611
D KQ
Sbjct: 536 NPDDDYGFKQ 545
Score = 69.3 bits (169), Expect = 3e-12
Identities = 79/443 (17%), Positives = 137/443 (30%), Gaps = 154/443 (34%)
Query: 52 LYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYL--IP------GLRAMFDETYPDPV 103
+++ LN++ W ++TPD+ YL IP G+ + Y
Sbjct: 208 VFTQ-GLNILEWLENP-----------SNTPDKDYLLSIPISCPLIGVIQL--AHY---- 249
Query: 104 RVVCVGTPVEQLESEPESQAGMETSVEFCGGT-H---------LAMAHHVGDFCISSEEA 153
V + L P E G T H +A F +
Sbjct: 250 VVTA-----KLLGFTPG-----ELRSYLKGATGHSQGLVTAVAIAETDSWESF----FVS 295
Query: 154 IAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIA 213
+ K I ++ G +A ++++L N S LS I ++T
Sbjct: 296 VRKAI-TVLFFIGVRCYEA---YPNTSLPPSILEDSLENNEGVPSPMLS--ISNLT---- 345
Query: 214 KATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILD 273
+E +++ + L ++++ + SLV +V
Sbjct: 346 --------QEQVQDYVNKTNSHLPAGKQVE-------I-----SLVNGA--KNLVV---- 379
Query: 274 AGSNTKIPR-LRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRP 332
+G P+ L L++ +P +G IP S R+
Sbjct: 380 SGP----PQSLYGLNLTLRKAKAP--------------------SGLDQSRIPFS-ERKL 414
Query: 333 IMSN---------HTATHILNHALRFVLGPEADQKGSLVAPDRLR---FDFTNKGAMTAD 380
SN H +H+L A + S A D ++ +D T G +D
Sbjct: 415 KFSNRFLPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYD-TFDG---SD 467
Query: 381 QVKKAEAEVI-RIVQ--TKKPVYAKLCSLADAKKI--------KGLRAMFDE----TYPD 425
++ + RIV + PV + + A I GL + T
Sbjct: 468 -LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--- 523
Query: 426 PVRVVCVGTPVEQLESEPESQAG 448
VRV+ GT L+ P+ G
Sbjct: 524 GVRVIVAGT----LDINPDDDYG 542
Score = 58.9 bits (142), Expect = 5e-09
Identities = 62/359 (17%), Positives = 107/359 (29%), Gaps = 134/359 (37%)
Query: 240 ERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAG-SNTKI----PRLRSFEFGLKRQT 294
+ + + A V +R AD + G S I P + FG ++
Sbjct: 1634 DLYKTSKAAQDVWNR---------ADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 295 SPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSN---HTATHILNHALRFVL 351
+Y E G + I H+ ++
Sbjct: 1683 RIRE------NYSAMIFETIV---------DGKLKTEKIFKEINEHSTSYTFRS------ 1721
Query: 352 GPEADQKGSLVA-----PDRLRFDFTNKGAMTADQVKKAEAEVIR---IVQTKKPV---- 399
+KG L A P A+T ++KA E ++ ++
Sbjct: 1722 -----EKGLLSATQFTQP-----------ALTL--MEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 400 ---YAKLCSLADAKKIKGLRAM-FDETYPDPVRVVCV-GTPVEQLESEPESQAGMETSVE 454
YA L SLAD M + V VV G ++ + P + G
Sbjct: 1764 LGEYAALASLAD--------VMSIESL----VEVVFYRGMTMQ--VAVPRDELGR----- 1804
Query: 455 FCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAI-KKAQVIETEVLNVKNT 513
++ M AI G R+ A EA + + ++ ++ +
Sbjct: 1805 ----SNYGMI------------AINPG--RVAASFSQEALQYVVERVGKRTGWLVEI--- 1843
Query: 514 LSNPNTA--------DSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAE 564
N N D +AL + ++ I +K D+ L K++ SL+E E
Sbjct: 1844 -VNYNVENQQYVAAGDLRAL-DTVTNVLNFIKL------QKIDIIELQKSL--SLEEVE 1892
Score = 42.3 bits (99), Expect = 6e-04
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 104/313 (33%)
Query: 415 LRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISS 474
L+ F++ P+P T + EP + A E +F G + S
Sbjct: 33 LQEQFNKILPEP-------TEGFAADDEPTTPA--ELVGKFLG------------YVSSL 71
Query: 475 EEAIAKG-IRRIVALSGNEATKAIKKAQVIETEVLNVKN----TLSNPNTADSKALSKKI 529
E G +++ L E E L + D+ + K
Sbjct: 72 VEPSKVGQFDQVLNLCLTE----------FENCYLEGNDIHALAAKLLQENDTTLVKTK- 120
Query: 530 IDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKAD 589
L+K + A+R S + V E A
Sbjct: 121 ---------------------ELIKNYITARIMAKRPFDKKSNSALFRAV----GEGNA- 154
Query: 590 KFIVEILDA-----GSNTKALDAALKQV-KTSAPHMAAMFISVDEAAKKIFCLSSVPKEA 643
+ + A G+ + L+ + +T + I +A+ + L +A
Sbjct: 155 QLV-----AIFGGQGNTDDYFEE-LRDLYQTYHVLVGD-LI--KFSAETLSELIRTTLDA 205
Query: 644 VSAGLTAIDWVRYLTDIMGGKGGGKAE---------SAQASGP--------NYENAPLVL 686
++ + +L + S S P +Y +L
Sbjct: 206 EKVFTQGLNILEWLEN---------PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 687 SKARDYASQQLSG 699
L G
Sbjct: 257 GFTPGELRSYLKG 269
Score = 35.8 bits (82), Expect = 0.067
Identities = 43/272 (15%), Positives = 80/272 (29%), Gaps = 103/272 (37%)
Query: 331 RPIMSNH----------TATHILNHA--LR--FVL-------GPEADQKGS----LVAPD 365
RP+ +H TA+ A L+ F G AD + + LV
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFF--IASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-- 62
Query: 366 RLRF-DFTNKGAMTADQVKKAEA----EVIRIVQTK--------KPVYAKLCSLAD---- 408
+F + + V+ ++ +V+ + T+ ++A L
Sbjct: 63 --KFLGYV------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 409 --AKKIKGLRAMFDETYPDPVRVVCVGTPVEQ------LESEPESQAGMETSVEFCGG-- 458
K + ++ + P ++ + E A + F GG
Sbjct: 115 TLVKTKELIKNYITA-------RIMAKRPFDKKSNSALFRAVGEGNAQLVA--IF-GGQG 164
Query: 459 ------THLAM-----AHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEV 507
L VGD S E + +E + A+ + T+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETL------------SELIRTTLDAEKVFTQG 212
Query: 508 LNVKNTLSNPNTA------DSKALSKKIIDIT 533
LN+ L NP+ S +S +I +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Score = 35.4 bits (81), Expect = 0.071
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 121 SQAGM---ETSVE--FCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAI-K 174
S A + E+ VE F G + +A + S+ IA R+ A EA + + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 175 KAQVIETEVLNVKNTLSNPNTA--------DSKALSKKIIDITEEIAKATLPYWKKEDLR 226
+ ++ + N N D +AL + ++ I +K D+
Sbjct: 1832 RVGKRTGWLVEI----VNYNVENQQYVAAGDLRAL-DTVTNVLNFIKL------QKIDII 1880
Query: 227 NLLKTMKKSLDEAE 240
L K++ SL+E E
Sbjct: 1881 ELQKSL--SLEEVE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 3e-11
Identities = 67/534 (12%), Positives = 140/534 (26%), Gaps = 181/534 (33%)
Query: 203 KKIIDITEEIAKATLPYWKKED-LRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVE- 260
K I+ + E+ +D +++L +E + + + A R+ +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSK-----EEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 261 --ERKADKFIVEILDAG---------SNTKIPRLRSFEFGLKRQT--------SPYHVKS 301
E KF+ E+L + + P + + + +R + Y+V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 302 HGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVL------GPEA 355
R +P + A L A ++ G
Sbjct: 133 ---------------------------RLQPYLKLRQALLELRPAKNVLIDGVLGSG--- 162
Query: 356 DQKGSLVA------PDRLRFDFTNKGA--MTADQVKKAEAEVIRIVQTKKPVYAKLCSLA 407
K + + + DF + E V+ ++Q L
Sbjct: 163 --KTWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPE-TVLEMLQK-------LLYQI 209
Query: 408 DAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHV 467
D + D + +R+ +++E L +
Sbjct: 210 D----PNWTSRSDHSSNIKLRI-------HSIQAELR---------------RL-LKSKP 242
Query: 468 GDFC------ISSEEAIAK-GIR-RIVALSGNEA-TKAIKKAQVIETEVLNVKNTLSNPN 518
+ C + + +A + +I+ + + T + A + + TL+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 519 TAD--SKALSKKIIDITEEIAKATLP------------------YWKKEDLRNLLKTMKK 558
K L + D+ E T P WK + L ++
Sbjct: 303 VKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 559 SLD--EAERLQKAAHA-----------SKVLDRV------------------KSLVEERK 587
SL+ E +K + +L + SLV E++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQ 420
Query: 588 ADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPK 641
+ + I L+ +K A H + K F +
Sbjct: 421 PKESTISIPSI-----YLELKVKLENEYALH--RSIVDHYNIPKT-FDSDDLIP 466
Score = 52.5 bits (125), Expect = 4e-07
Identities = 51/353 (14%), Positives = 101/353 (28%), Gaps = 97/353 (27%)
Query: 331 RPIMSNHTATHILN-----HALRFVLGPEADQKGSLVA---PDRLRFDFTNKGAMTADQV 382
+ I+S HI+ + ++ +V + LR ++ + +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 383 KKAEAEVIRIVQTKK------PVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPV 436
++ ++ + V+AK +++ + LR E P ++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLID----- 156
Query: 437 EQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALS-GNEATK 495
G+ G T +A D C S + K +I L+ N +
Sbjct: 157 -----------GVLG----SGKTWVA-----LDVC-LSYKVQCKMDFKIFWLNLKNCNS- 194
Query: 496 AIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKT 555
VL + L + + S +I I + +LR LLK+
Sbjct: 195 --------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELRRLLKS 240
Query: 556 M--KKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAG----------SNTK 603
+ L VL V+ + + T
Sbjct: 241 KPYENCLL-------------VLLNVQ--------NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 604 ALDAALKQVKTSAPHMAAMFISVDEA----AKKIFC-LSSVPKEAVSAGLTAI 651
L AA + H + + DE K + C +P+E ++ +
Sbjct: 280 FLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Score = 51.4 bits (122), Expect = 9e-07
Identities = 43/328 (13%), Positives = 87/328 (26%), Gaps = 108/328 (32%)
Query: 160 RIVALSGNEA-TKAIKKAQVIETEVLNVKNTLSNPNTAD--SKALSKKIIDITEEIAKAT 216
+I+ + + T + A + + TL+ K L + D+ E T
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTT 325
Query: 217 LP------------------YWKKEDLRNLLKTMKKSLD--EAERLQKAAHA-------- 248
P WK + L ++ SL+ E +K
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 249 ---SKVLDRV------------------KSLVEERKADKFIVEILDAGSNTKIPR----- 282
+ +L + SLV E++ + + I K+
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYA 444
Query: 283 -----LRSFEFGLKRQT---SPYHVKSHGYSYI-------EPCVEIC---------AWTG 318
+ + + P ++ + YS+I E + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 319 G--RSEGIPGSAR-------------RRPIMSNHTATH-ILNHALRFVLGPEADQKGSLV 362
R + +A + I N ++N L F+ E + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN---LIC 561
Query: 363 AP--DRLRFDFTNKG----AMTADQVKK 384
+ D LR + QV++
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.086
Identities = 38/239 (15%), Positives = 64/239 (26%), Gaps = 71/239 (29%)
Query: 465 HHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKA 524
HH DF + K I LS E A + K+ P + SK
Sbjct: 4 HHHMDFETGEHQYQYKDI-----LSVFE--DAFVDN-------FDCKDVQDMPKSILSKE 49
Query: 525 LSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVE 584
II + ++ +W L + ++ + V+ VE
Sbjct: 50 EIDHIIMSKDAVSGTLRLFW-------TLLSKQEEM------------------VQKFVE 84
Query: 585 E--RK-----ADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLS 637
E R E T+ ++ A +S + K+
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---- 140
Query: 638 SVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQ 696
++A L + + + I G G GK + + L Y Q
Sbjct: 141 ---RQA----LLELRPAKNVL-IDGVLGSGK--TW-----------VALDVCLSYKVQC 178
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 59.2 bits (144), Expect = 2e-10
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 15/151 (9%)
Query: 547 EDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALD 606
E K +K E ERL K+ A D + EE + K + E++DA + +AL
Sbjct: 35 ERFFEEWKDQRK---EIERL-KSVIADLWADILMERAEEFDSMKVVAEVVDA--DMQALQ 88
Query: 607 AALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGG 666
+++ ++ E K+F ++ A + +R + + G GG
Sbjct: 89 KLAERLAEKG--AVGCLMAKGE--GKVFVVT-----FSGQKYDARELLREIGRVAKGSGG 139
Query: 667 GKAESAQASGPNYENAPLVLSKARDYASQQL 697
G+ + AQ + + +L + S+
Sbjct: 140 GRKDVAQGAVQQLLDREEMLDVIFRFLSEHE 170
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
nucleotide-binding; 1.85A {Aquifex aeolicus}
Length = 111
Score = 49.9 bits (120), Expect = 8e-08
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 583 VEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKE 642
E + + + L ++ S KI + V KE
Sbjct: 3 EENVGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASRKG--DKINFVIGVSKE 59
Query: 643 AVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDY 692
+ A + +R + ++ G GGG+A+ AQ G + P + ++
Sbjct: 60 ISD-KVNAKEVIREVGKVLKGGGGGRADLAQGGGKAPDKFPEAVKLLKEI 108
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 33.3 bits (77), Expect = 0.30
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 24/96 (25%)
Query: 337 HTATHILNHAL-------RFVLGPEADQKGSLVAPDRLRF--DFTNKGAMTADQVKKAEA 387
H+ H++ HA+ +F +GP + G F DF +++D ++ E
Sbjct: 75 HSTAHLMAHAIKRLYGNVKFGVGP-VIEGG---------FYYDFDIDQNISSDDFEQIEK 124
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETY 423
+ +IV + K+ S +AK++ ++ Y
Sbjct: 125 TMKQIVNENMKIERKVVSRDEAKEL-----FSNDEY 155
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 32.8 bits (75), Expect = 0.42
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 190 LSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTM-KKSLDEAERLQKAAHA 248
L + + ++I+D +A T +E R+ K + E + L A +
Sbjct: 192 LGGGDEEAIRPQMQQILDFETALANIT---IPQEKRRDEELIYHKVTAAELQTLAPAINW 248
Query: 249 SKVLDRVKSLVEERKADKFIV 269
L+ + VE +++ +V
Sbjct: 249 LPFLNTIFYPVEINESEPIVV 269
Score = 32.8 bits (75), Expect = 0.42
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 514 LSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTM-KKSLDEAERLQKAAHA 572
L + + ++I+D +A T +E R+ K + E + L A +
Sbjct: 192 LGGGDEEAIRPQMQQILDFETALANIT---IPQEKRRDEELIYHKVTAAELQTLAPAINW 248
Query: 573 SKVLDRVKSLVEERKADKFIV 593
L+ + VE +++ +V
Sbjct: 249 LPFLNTIFYPVEINESEPIVV 269
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.73
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 603 KALDAALKQ-VKTSAPHMA 620
K L A+LK SAP +A
Sbjct: 23 KKLQASLKLYADDSAPALA 41
Score = 29.1 bits (64), Expect = 3.0
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 171 KAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKI 205
+A+KK ++ ++K L ++A + A+ +
Sbjct: 20 QALKK---LQA---SLK--LYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 3.0
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 495 KAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKI 529
+A+KK ++ ++K L ++A + A+ +
Sbjct: 20 QALKK---LQA---SLK--LYADDSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 6.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 628 EAAKKIFCLSSVPKEAVSAGL 648
+A+ K++ S P A+ A +
Sbjct: 26 QASLKLYADDSAPALAIKATM 46
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 30.6 bits (70), Expect = 2.3
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Query: 337 HTATHILNHAL-------RFVLGPEADQKGSLVAPDRLRF--DFTNKGAMTADQVKKAEA 387
H+ H+L HA+ + +GP D G F D +T + V+ E
Sbjct: 73 HSCAHLLGHAIKQLWPHTKMAIGPVIDN-G---------FYYDVDLDRTLTQEDVEALEK 122
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKI 412
+ + + V K S +A++
Sbjct: 123 RMHELAEKNYDVIKKKVSWHEARET 147
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 30.0 bits (68), Expect = 2.9
Identities = 19/163 (11%), Positives = 47/163 (28%), Gaps = 12/163 (7%)
Query: 492 EATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDIT------EEIAKATLPYWK 545
EA A+K I+ + L +++NP A AL + + ++I +
Sbjct: 64 EAQNAVK---SIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENF 120
Query: 546 KEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKAL 605
+ N + + + + A +V+ A N +
Sbjct: 121 IPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVN--RASLAAGPMVKWAIAQLNYADM 178
Query: 606 DAALKQVKTSAPHMAAMFISVDEAAKKI-FCLSSVPKEAVSAG 647
++ ++ + + + + + P G
Sbjct: 179 LKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVG 221
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 29.4 bits (67), Expect = 3.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 222 KEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 264
K LR +L + LQK ++ + SL E + A
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTE---RMYKYLFSLPEWQNA 41
Score = 29.4 bits (67), Expect = 3.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 546 KEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 588
K LR +L + LQK ++ + SL E + A
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTE---RMYKYLFSLPEWQNA 41
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 29.1 bits (66), Expect = 3.8
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 264
+K LR + SL + + +++ + E +A
Sbjct: 12 EKLRLRKQIIEHMNSLSKERYTTLSE---QIVFSLYEQKEWAEA 52
Score = 29.1 bits (66), Expect = 3.8
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 588
+K LR + SL + + +++ + E +A
Sbjct: 12 EKLRLRKQIIEHMNSLSKERYTTLSE---QIVFSLYEQKEWAEA 52
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 28.8 bits (65), Expect = 4.4
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADK 266
K LR LK +++ ERL+++ + +V + E +K+ +
Sbjct: 9 AKRSLRGELKQRLRAMSAEERLRQSR---VLSQKVIAHSEYQKSKR 51
Score = 28.8 bits (65), Expect = 4.4
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADK 590
K LR LK +++ ERL+++ + +V + E +K+ +
Sbjct: 9 AKRSLRGELKQRLRAMSAEERLRQSR---VLSQKVIAHSEYQKSKR 51
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 28.8 bits (65), Expect = 4.6
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFI 268
K LR + + +L E+ K+ ++ + + + K I
Sbjct: 27 DKNALRKQILQKRMALSTIEKSHL---DQKINQKLVAFLTPKPCIKTI 71
Score = 28.8 bits (65), Expect = 4.6
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFI 592
K LR + + +L E+ K+ ++ + + + K I
Sbjct: 27 DKNALRKQILQKRMALSTIEKSHL---DQKINQKLVAFLTPKPCIKTI 71
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.5 bits (66), Expect = 5.1
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 151 EEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSK--ALSKKIIDI 208
+ + +A+ +A ++KA+ V+ + N K + I +
Sbjct: 1981 LQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITAL 2040
Query: 209 TEEIAKATLPY----WKKEDLRNLLKTMKKSLDEAERL 242
+ IA Y + E ++ +K +D + L
Sbjct: 2041 EKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078
Score = 29.5 bits (66), Expect = 5.1
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 475 EEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSK--ALSKKIIDI 532
+ + +A+ +A ++KA+ V+ + N K + I +
Sbjct: 1981 LQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITAL 2040
Query: 533 TEEIAKATLPY----WKKEDLRNLLKTMKKSLDEAERL 566
+ IA Y + E ++ +K +D + L
Sbjct: 2041 EKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 29.3 bits (66), Expect = 5.2
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 167 NEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLR 226
+ +I L + + K++++ +EIA AT K ED
Sbjct: 184 YKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANAT---AKPEDRN 240
Query: 227 NLLKTM-KKSLDEAERLQKAAHASKVLD 253
+ + K +L + + K
Sbjct: 241 DPMLLYNKMTLAQIQNNFSLEINGKPFS 268
Score = 29.3 bits (66), Expect = 5.2
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 491 NEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLR 550
+ +I L + + K++++ +EIA AT K ED
Sbjct: 184 YKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANAT---AKPEDRN 240
Query: 551 NLLKTM-KKSLDEAERLQKAAHASKVLD 577
+ + K +L + + K
Sbjct: 241 DPMLLYNKMTLAQIQNNFSLEINGKPFS 268
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 29.2 bits (66), Expect = 5.3
Identities = 15/141 (10%), Positives = 41/141 (29%), Gaps = 21/141 (14%)
Query: 158 IRRIVALSGNEATKAIKKAQVIETEVLNV-KNTLSNP-------NTADSKALSKKIIDIT 209
++ + L + +K ++ + + N+ + L ++ A +I +
Sbjct: 129 MQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEF 188
Query: 210 EEIAKATLPYWKKEDLRNLLKTMKKSLDE-------AERLQKAAHASKVLDRVKSLVEER 262
K LP + + K + + E L + L +++
Sbjct: 189 RRFDKL-LPKLARTTVNKEEKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDE 247
Query: 263 KAD-----KFIVEILDAGSNT 278
D + ++ L
Sbjct: 248 GIDAEMQRRAMLLQLWVTQGN 268
Score = 29.2 bits (66), Expect = 5.3
Identities = 15/141 (10%), Positives = 41/141 (29%), Gaps = 21/141 (14%)
Query: 482 IRRIVALSGNEATKAIKKAQVIETEVLNV-KNTLSNP-------NTADSKALSKKIIDIT 533
++ + L + +K ++ + + N+ + L ++ A +I +
Sbjct: 129 MQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEF 188
Query: 534 EEIAKATLPYWKKEDLRNLLKTMKKSLDE-------AERLQKAAHASKVLDRVKSLVEER 586
K LP + + K + + E L + L +++
Sbjct: 189 RRFDKL-LPKLARTTVNKEEKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQDE 247
Query: 587 KAD-----KFIVEILDAGSNT 602
D + ++ L
Sbjct: 248 GIDAEMQRRAMLLQLWVTQGN 268
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 29.0 bits (66), Expect = 5.5
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKAD 265
KK L + T+++ L ER A ++ ++V+ + RKA+
Sbjct: 34 KKGHLTLQMTTLRE-LPPEERPAAGAVINEAKEQVQQALNARKAE 77
Score = 29.0 bits (66), Expect = 5.5
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKAD 589
KK L + T+++ L ER A ++ ++V+ + RKA+
Sbjct: 34 KKGHLTLQMTTLRE-LPPEERPAAGAVINEAKEQVQQALNARKAE 77
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 28.2 bits (64), Expect = 6.9
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 337 HTATHILNHALR-------FVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEV 389
H+ H+L HA++ +GP D + +D +T + V+ E +
Sbjct: 73 HSCAHLLGHAIKQLWPHTKMAIGPVID--------NGFYYDVDLDRTLTQEDVEALEKRM 124
Query: 390 IRIVQTKKPVYAKLCSLADAKKI 412
+ + V K S +A++
Sbjct: 125 HELAEKNYDVIKKKVSWHEARET 147
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway,
isoprene biosynthesis, metal- NADP, oxidoreductase; HET:
NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Length = 376
Score = 28.6 bits (65), Expect = 7.1
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 586 RKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVS 645
+K + + SN + K VK A+ V+ I ++
Sbjct: 24 KKVKGIRLIGISFHSNLELA---FKIVKEFNVKNVAITGDVEFEDSSINVWKG--SHSIE 78
Query: 646 --AGLTAIDWVRYLTDIMGGKG 665
D + + G G
Sbjct: 79 EMLEALKPDIT--MVAVSGFSG 98
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 28.4 bits (64), Expect = 8.6
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 221 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 264
KK L +K + L ER ++ + + +++ +E R+
Sbjct: 28 KKGLLTQEMKGLSA-LPLEERRKRGQELNAIKAALEAALEAREK 70
Score = 28.4 bits (64), Expect = 8.6
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 545 KKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKA 588
KK L +K + L ER ++ + + +++ +E R+
Sbjct: 28 KKGLLTQEMKGLSA-LPLEERRKRGQELNAIKAALEAALEAREK 70
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 28.4 bits (63), Expect = 9.2
Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 366 RLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPD 425
+++ + ++G + E +V+ + ++ +K AMFDE
Sbjct: 59 QVKAEGISEGNTGTSFIVPFEDVPRVVVKDLRDD-PSAPTIEGMRKAGYPMAMFDENIIA 117
Query: 426 PVRVVCVGTPVEQLESEPESQAGMETSV-EFCGGTHLAMA--HHVGD 469
P + + P+ + + + + GG L + H D
Sbjct: 118 PRKTL----PIGPGTGPDDPKPVILLQLNFIKGGLILTVNGQHGAMD 160
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent,
fosmidomycin, non- mevalonate pathway, oxidoreductase;
1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3
d.81.1.3 PDB: 1r0l_A*
Length = 388
Score = 28.2 bits (64), Expect = 9.4
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 583 VEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIF--CLSSVP 640
+ ER D++ V L A N K L K + A + D + L+
Sbjct: 23 LIERNLDRYQVIALTANRNVKDL---ADAAKRTNAKRAVI---ADPSLYNDLKEALAGSS 76
Query: 641 KEAVS--AGLTAI-----DWVRYLTDIMGGKG 665
EA + L DW + I+G G
Sbjct: 77 VEAAAGADALVEAAMMGADWT--MAAIIGCAG 106
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 28.4 bits (64), Expect = 9.5
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 21/94 (22%)
Query: 585 ERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAA----KKIFCLSSVP 640
+ + F V+ L + L +Q + P + D++ K++
Sbjct: 101 NKIENVFNVKALYVNKSVNEL---YEQAREFLPEYLCI---HDKSVYEELKELVKNIKDY 154
Query: 641 KEAVSAGLTAI---------DWVRYLTDIMGGKG 665
K + G + D + + I +G
Sbjct: 155 KPIILCGDEGMKEICSSNSIDKI--VIGIDSFQG 186
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 28.4 bits (63), Expect = 9.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 211 EIAKATLPYWKKEDLRNLL---KTMKKSLDEAERLQKAAHASKVL 252
E+ L + K L + SLD+AE + KAA V
Sbjct: 104 EVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQ 148
Score = 28.4 bits (63), Expect = 9.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 535 EIAKATLPYWKKEDLRNLL---KTMKKSLDEAERLQKAAHASKVL 576
E+ L + K L + SLD+AE + KAA V
Sbjct: 104 EVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQ 148
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 9.8
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 200 ALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV 259
A SK + E AK L W + ++ E+++K +++ D K+
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQR--QS------------EQVEKNKINNRIAD--KAFY 146
Query: 260 EERKAD 265
++ AD
Sbjct: 147 QQPDAD 152
Score = 27.8 bits (61), Expect = 9.8
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 524 ALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLV 583
A SK + E AK L W + ++ E+++K +++ D K+
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQR--QS------------EQVEKNKINNRIAD--KAFY 146
Query: 584 EERKAD 589
++ AD
Sbjct: 147 QQPDAD 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.368
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,550,255
Number of extensions: 661834
Number of successful extensions: 2181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2146
Number of HSP's successfully gapped: 75
Length of query: 699
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 599
Effective length of database: 3,909,693
Effective search space: 2341906107
Effective search space used: 2341906107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.6 bits)