RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6230
(699 letters)
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 86.9 bits (214), Expect = 1e-20
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 15/154 (9%)
Query: 334 MSNHTATHILNHALRFVLGPEADQKGS-LVAPDRLRFDFTNKGAMTADQVKKAEAEVIRI 392
+ H+A H++ A+ VLG EA S V ++ + +++++ E
Sbjct: 6 VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65
Query: 393 VQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETS 452
V+ P+ +A+K+ G P+ VR++ V + +
Sbjct: 66 VKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDW-------------N 112
Query: 453 VEFCGGTHLAMAHHVGDFCI-SSEEAIAKGIRRI 485
V C H +G I +KG+ I
Sbjct: 113 VNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
Score = 38.7 bits (89), Expect = 6e-04
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 126 ETSVEFCGGTHLAMAHHVGDFCI-SSEEAIAKGIRRI 161
+ +V C H +G I +KG+ I
Sbjct: 110 DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 85.6 bits (211), Expect = 2e-20
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 38/158 (24%)
Query: 329 RRRPIMSNHTATHILNHALRFVLGPEA-DQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
R +M HT H+L H L VLG GS ++ ++ R+D + +
Sbjct: 4 YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK-----E 58
Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
++I + K + + + R +
Sbjct: 59 QIISLFN---------------KYVDEGGEVKIW-WEGDRRYTQIR-------------- 88
Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 485
+ V CGGTH+ +G +I +G +R+
Sbjct: 89 --DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRL 124
Score = 47.8 bits (113), Expect = 3e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 128 SVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRI 161
V CGGTH+ +G +I +G +R+
Sbjct: 91 EVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRL 124
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 62.1 bits (150), Expect = 8e-12
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 15/178 (8%)
Query: 325 PGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKK 384
PGS ++ H+ H++ HA++ + V +DF +++D ++
Sbjct: 2 PGSEEALEVL-RHSTAHLMAHAIKRLY-GNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQ 59
Query: 385 AEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPE 444
E + +IV + K+ S +AK+ +F + E E
Sbjct: 60 IEKTMKQIVNENMKIERKVVSRDEAKE------LFSNDEYKLELI------DAIPEDENV 107
Query: 445 SQAGMETSVEFCGGTHLAMAHHVGDFCISSEEA-IAKGIRRIVALSGNEATKAIKKAQ 501
+ + C G H+ + +F + S +G L T K +
Sbjct: 108 TLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKE 165
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 56.7 bits (136), Expect = 5e-10
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 336 NHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQT 395
H+ H+L HA++ L P V + +D +T + V+ E + + +
Sbjct: 10 RHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEK 68
Query: 396 KKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEF 455
V K S +A++ A E+Y + + + E V+
Sbjct: 69 NYDVIKKKVSWHEARE---TFANRGESYKVSILDENIA------HDDKPGLYFHEEYVDM 119
Query: 456 CGGTHLAMAHHVGDFCISSE 475
C G H+ F +
Sbjct: 120 CRGPHVPNMRFCHHFKLMKT 139
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 28.9 bits (63), Expect = 2.1
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 232 MKKSLDEAERLQKAAHAS-----KVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSF 286
M KS +E ++ A + V++ + V E + + + +
Sbjct: 1 MIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELM 60
Query: 287 EFGLKRQTSPYHVKSHG 303
+ Q+ +H
Sbjct: 61 DTWTWFQSGINTDGAHN 77
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 533 TEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFI 592
T E P + ++ K + RL + A +L + S +E R D
Sbjct: 12 TGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRA-SLLRTIASELEARSDDIIA 70
Query: 593 VEILDAGSNTKALDAALKQVKTSAPHM 619
L+ ++ +A +
Sbjct: 71 RAHLETA---LPEVRLTGEIARTANQL 94
>d1aora2 d.152.1.1 (A:1-210) Aldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 27.4 bits (61), Expect = 4.4
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 373 NKGAMTADQVKKAEAEVIRIVQT-KKPVYAKL----CSLADAKKIKGL------RAMFDE 421
N G ++K A + I + +KPVY + + DA I G + E
Sbjct: 93 NSGGYFGAELKFAGYDAIVVEGKAEKPVYIYIKDEHIEIRDASHIWGKKVSETEATIRKE 152
Query: 422 TYPDPVRVVCVGTPVEQL 439
+ V++ +G E L
Sbjct: 153 VGSEKVKIASIGPAGENL 170
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 28.0 bits (62), Expect = 4.8
Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 19/227 (8%)
Query: 368 RFDFTNKGAMTADQVKKAEAEVIRIVQ-----TKKPVYAKLCSLADAKKIKGLRAMFDET 422
R + + K E I + + K + K+ L K+++G+ A+ DE+
Sbjct: 208 RGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 267
Query: 423 YPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHH----VGDFCISSEEAI 478
D +R+V E +T ++ G ++ HH + + +
Sbjct: 268 DKDGMRIVIEVKRDAVGEVVLN-NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFV 326
Query: 479 AKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAK 538
+ + E KA +A ++E + + N + T AK
Sbjct: 327 RHRREVVTRRTIFELRKARDRAHILEALAVALANID--------PIIELIRHAPTPAEAK 378
Query: 539 ATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEE 585
L + L N+ ++++ D+A R + V D + L E+
Sbjct: 379 TALVANPWQ-LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 424
>d1b25a2 d.152.1.1 (A:1-210) Formaldehyde ferredoxin oxidoreductase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 210
Score = 27.4 bits (61), Expect = 5.1
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 373 NKGAMTADQVKKAEAEVIRIVQT-KKPVYAKLC----SLADAKKIKGLR-----AMFDET 422
N G M + +++A + + + KKPVY + S+ A+ + G E
Sbjct: 92 NLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEI 151
Query: 423 YPDPVRVVCVGTPVEQL 439
+ V V+ +G E L
Sbjct: 152 HGKNVGVLTIGPAGENL 168
>d1rp3b_ a.137.11.1 (B:) Anti-sigma factor FlgM {Aquifex aeolicus
[TaxId: 63363]}
Length = 87
Score = 25.8 bits (56), Expect = 6.8
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 158 IRRIVALSGNEATKAIKKAQVIETEVLNVKNTLS------NPNTADSKALSKKIIDITEE 211
+ R++ L + + + T + K TLS + N + K L KK+ ++ E+
Sbjct: 6 LSRLIGLLLETEKRKNTEQKESGTNKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEK 65
Query: 212 IAKAT 216
I K
Sbjct: 66 IEKGE 70
Score = 25.8 bits (56), Expect = 6.8
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 482 IRRIVALSGNEATKAIKKAQVIETEVLNVKNTLS------NPNTADSKALSKKIIDITEE 535
+ R++ L + + + T + K TLS + N + K L KK+ ++ E+
Sbjct: 6 LSRLIGLLLETEKRKNTEQKESGTNKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEK 65
Query: 536 IAKAT 540
I K
Sbjct: 66 IEKGE 70
>d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria
meningitidis, (serogroup A) [TaxId: 487]}
Length = 371
Score = 27.2 bits (60), Expect = 7.5
Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 31/189 (16%)
Query: 361 LVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKG----LR 416
++APD K ++TA QV +A + V LC + D G +
Sbjct: 4 VIAPDSF------KESLTAQQVAEAIKRGFQQSIAD--VECLLCPVGD-----GGEGTVD 50
Query: 417 AMFDETYPDPVRVVC---VGTPVEQLESEPESQAGMETSVEFCG------GTHLAMAHHV 467
A+ + + G + E A E + + G +
Sbjct: 51 AIRHSLDLEEKCLQVTGSFGQKEVMRYFQKEQLALFEVA-DLVGLGKIPLEKRNPLQIQT 109
Query: 468 GDFCISSEEAIAKGIRRIVALSGNEATK--AIKKAQVIETEVLNVKNTLSNPNTADSKAL 525
I++ I+ I G A+ I A + + + L
Sbjct: 110 RGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALPACGQSLLNL 169
Query: 526 SKKIIDITE 534
+ +
Sbjct: 170 AS--VSTEN 176
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD
{Escherichia coli [TaxId: 562]}
Length = 413
Score = 26.9 bits (58), Expect = 9.8
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 12/139 (8%)
Query: 219 YWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVK----------SLVEERKADKFI 268
WK L L+ + S+ Q+ + LD V+ +L + + +
Sbjct: 40 NWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGSGYE 99
Query: 269 VEILDA--GSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPG 326
V I D G I S H+ + + T G +
Sbjct: 100 VSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVN 159
Query: 327 SARRRPIMSNHTATHILNH 345
+A R +
Sbjct: 160 TAHYRHHLDLAEGAEATVI 178
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.368
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,488,176
Number of extensions: 117682
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 30
Length of query: 699
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 607
Effective length of database: 1,144,436
Effective search space: 694672652
Effective search space used: 694672652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)