BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6232
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O42305|FLOT2_CARAU Flotillin-2 OS=Carassius auratus GN=flot2 PE=1 SV=1
          Length = 428

 Score = 33.9 bits (76), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 39 AWVWLLWLLSQTW-ITLHIWT--PKCERLATTE 68
           W W  WL+S T  ITL I T  PKCE + T E
Sbjct: 31 GWAWAWWLISDTQRITLEIMTLQPKCEDVETAE 63


>sp|Q10283|HMDH_SCHPO 3-hydroxy-3-methylglutaryl-coenzyme A reductase
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=hmg1 PE=1 SV=2
          Length = 1053

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 16/69 (23%)

Query: 25  PSIYFLDDF---------ILKQH--AWVWLLWLLSQTWI-TLHIWTPKCERLATTEKLFV 72
           P  YFLD            +++H  +W WLL L+++TW+ TL I      + + TE L V
Sbjct: 153 PIDYFLDSSSTVIQRILPAIREHGISWSWLLQLIARTWMNTLKI----ASQASKTELLIV 208

Query: 73  RPMYDALLI 81
              Y  +LI
Sbjct: 209 GTAYACMLI 217


>sp|Q98TZ8|FLOT2_DANRE Flotillin-2a OS=Danio rerio GN=flot2a PE=2 SV=2
          Length = 428

 Score = 30.4 bits (67), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 39 AWVWLLWLLSQTW-ITLHIWT--PKCERLATTE 68
           W W  WL++    ITL I T  PKCE + T E
Sbjct: 31 GWAWAWWLITDIQKITLEIMTLQPKCEDVETAE 63


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.141    0.490 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,713,646
Number of Sequences: 539616
Number of extensions: 1370953
Number of successful extensions: 2804
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2804
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)