Query psy6232
Match_columns 100
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 21:10:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwt_A Protease NS2-3; NS2 dom 41.0 12 0.00042 21.1 1.4 18 42-60 6-28 (33)
2 4gbu_A NADPH dehydrogenase 1; 16.0 49 0.0017 25.9 1.2 18 77-94 195-214 (400)
3 3n4s_A Monopolin complex subun 14.7 51 0.0018 23.0 0.8 26 11-36 83-109 (116)
4 1hmj_A RPB5, protein (subunit 13.7 32 0.0011 22.4 -0.4 25 52-76 3-27 (78)
5 4a3u_A NCR, NADH\:flavin oxido 12.8 69 0.0024 24.7 1.2 18 77-94 175-194 (358)
6 1eik_A RNA polymerase subunit 12.6 29 0.001 22.5 -0.9 23 52-74 5-27 (77)
7 3tjl_A NADPH dehydrogenase; OL 11.3 78 0.0027 25.5 1.1 19 76-94 190-210 (407)
8 4ayb_H DNA-directed RNA polyme 8.8 49 0.0017 21.5 -0.8 22 52-73 11-32 (84)
9 2afd_A Protein ASL1650; twiste 8.6 1.2E+02 0.0042 17.3 1.0 24 14-37 63-86 (88)
10 3r1m_A Putative uncharacterize 8.4 71 0.0024 26.4 -0.2 18 69-86 145-163 (385)
No 1
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=40.99 E-value=12 Score=21.10 Aligned_cols=18 Identities=44% Similarity=1.044 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHh-----hhccCcc
Q psy6232 42 WLLWLLSQTWIT-----LHIWTPK 60 (100)
Q Consensus 42 WLlWllSQ~Wit-----~HiW~p~ 60 (100)
.++|| .|-+|+ +|.|.|.
T Consensus 6 ~~lWW-lqYfi~R~EA~l~vWvPp 28 (33)
T 2kwt_A 6 RLIWW-LQYFITRAEAHLQVWIPP 28 (33)
T ss_dssp STHHH-HHHHHHHHHHHHTTSCCT
T ss_pred HHHHH-HHHHHHHHHHHHHhhCCC
Confidence 35788 566664 7999885
No 2
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=16.00 E-value=49 Score=25.94 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.7
Q ss_pred hhhhhhhhh--hhccccccc
Q psy6232 77 DALLIDQSM--SLNRRCDDE 94 (100)
Q Consensus 77 ~~~liDQsl--~lNRrr~d~ 94 (100)
.|-||+|.| ..|+|.|+.
T Consensus 195 hGYLl~QFLSp~tN~RtDeY 214 (400)
T 4gbu_A 195 NGYLLNQFLDPHSNTRTDEY 214 (400)
T ss_dssp TTSHHHHHHCTTTCCCCSTT
T ss_pred ccchHHheecCcCCCCcccc
Confidence 377999999 589888864
No 3
>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET: 1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*
Probab=14.67 E-value=51 Score=22.99 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=19.4
Q ss_pred ccccCCCCceeccCC-CcccHHHHHHH
Q psy6232 11 FFQNSIPDYLFFVSP-SIYFLDDFILK 36 (100)
Q Consensus 11 ~f~~~iPdyLF~~~p-~~~~l~~f~~~ 36 (100)
.+...+||||+=+.- |...+..|-.+
T Consensus 83 ~L~~~LPdYL~d~lsFP~~~l~qFY~K 109 (116)
T 3n4s_A 83 SLQSKLPEYLFETLSFPLSSLNQFYNK 109 (116)
T ss_dssp HHHTTSCGGGGSCEEEEGGGHHHHHHH
T ss_pred HHHHHCcHhheeeEEecHHHHHHHHHH
Confidence 456789999987765 66788877654
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=13.72 E-value=32 Score=22.35 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=19.8
Q ss_pred HhhhccCcccccccccccccccccc
Q psy6232 52 ITLHIWTPKCERLATTEKLFVRPMY 76 (100)
Q Consensus 52 it~HiW~p~~eRLA~tEkLFv~p~Y 76 (100)
||-|.-.|+++.|.+.||-=+.--|
T Consensus 3 It~H~LVPkH~iLs~eEk~~lL~~y 27 (78)
T 1hmj_A 3 VTDHILVPKHEIVPKEEVEEILKRY 27 (78)
T ss_pred ccceeeCCCeEECCHHHHHHHHHHc
Confidence 6789999999999999985544444
No 5
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=12.77 E-value=69 Score=24.71 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=14.5
Q ss_pred hhhhhhhhh--hhccccccc
Q psy6232 77 DALLIDQSM--SLNRRCDDE 94 (100)
Q Consensus 77 ~~~liDQsl--~lNRrr~d~ 94 (100)
.|-||+|.| ..|+|.|+.
T Consensus 175 hGYLl~QFLSp~tN~RtDeY 194 (358)
T 4a3u_A 175 NGYLIDEFIRDSTNHRHDEY 194 (358)
T ss_dssp TTSHHHHHHSTTTCCCCSTT
T ss_pred CCCcHHhceecccCCeeCCC
Confidence 477999999 489888864
No 6
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=12.57 E-value=29 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=18.5
Q ss_pred HhhhccCcccccccccccccccc
Q psy6232 52 ITLHIWTPKCERLATTEKLFVRP 74 (100)
Q Consensus 52 it~HiW~p~~eRLA~tEkLFv~p 74 (100)
||-|.-.|+++.|.+.||-=+.-
T Consensus 5 It~H~LVPkH~iLs~eEk~~lL~ 27 (77)
T 1eik_A 5 ILKHQLVPEHVILNESEAKRVLK 27 (77)
T ss_dssp CCSSSSCCEEEEECHHHHHHHHH
T ss_pred CccceecCCEEEcCHHHHHHHHH
Confidence 67899999999999998754433
No 7
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=11.32 E-value=78 Score=25.54 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.8
Q ss_pred chhhhhhhhhh--hccccccc
Q psy6232 76 YDALLIDQSMS--LNRRCDDE 94 (100)
Q Consensus 76 Y~~~liDQsl~--lNRrr~d~ 94 (100)
=+|-||+|.|. .|+|.|+.
T Consensus 190 ~~GYLl~QFLsp~~N~r~D~Y 210 (407)
T 3tjl_A 190 AHGYLLDQFLQPCTNQRTDEY 210 (407)
T ss_dssp CTTSHHHHHHSTTTCCCCSTT
T ss_pred ccchHHHHhcCccccccCCcC
Confidence 36779999998 58887754
No 8
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=8.81 E-value=49 Score=21.47 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.7
Q ss_pred HhhhccCccccccccccccccc
Q psy6232 52 ITLHIWTPKCERLATTEKLFVR 73 (100)
Q Consensus 52 it~HiW~p~~eRLA~tEkLFv~ 73 (100)
||-|.-.|+++.|..+|+-=+.
T Consensus 11 i~~H~LVPkH~vLs~eE~~~ll 32 (84)
T 4ayb_H 11 PRIHYLVPKHEVLSIDEAYKIL 32 (84)
T ss_dssp CSSSSSCCEEEECCHHHHHHHH
T ss_pred ccccccCCCeEECCHHHHHHHH
Confidence 6789999999999988864433
No 9
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=8.58 E-value=1.2e+02 Score=17.25 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.4
Q ss_pred cCCCCceeccCCCcccHHHHHHHH
Q psy6232 14 NSIPDYLFFVSPSIYFLDDFILKQ 37 (100)
Q Consensus 14 ~~iPdyLF~~~p~~~~l~~f~~~~ 37 (100)
--+|.-.+++.|++..+.+++...
T Consensus 63 ~~i~~~~~~~~~ti~~la~~l~~~ 86 (88)
T 2afd_A 63 KELNPVLIFNYPTIAQLAKRLGEL 86 (88)
T ss_dssp SCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred CCcCHHHHHhCCCHHHHHHHHHHH
Confidence 357888899999998888888764
No 10
>3r1m_A Putative uncharacterized protein ST0318; sulfolobus fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg binding, metal binding protein; 1.50A {Sulfolobus tokodaii} PDB: 1umg_A*
Probab=8.44 E-value=71 Score=26.44 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=13.8
Q ss_pred cccccccch-hhhhhhhhh
Q psy6232 69 KLFVRPMYD-ALLIDQSMS 86 (100)
Q Consensus 69 kLFv~p~Y~-~~liDQsl~ 86 (100)
|+|..|+++ |++||.+|.
T Consensus 145 k~FADPfntaGLVidP~mh 163 (385)
T 3r1m_A 145 KMFADPFNTPGLVIDPTMH 163 (385)
T ss_dssp HHHHCTTTCTHHHHCTTTT
T ss_pred HHhcCccCCCceeeccccc
Confidence 678888887 677888774
Done!