Query psy6232
Match_columns 100
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 21:10:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6232.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6232hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2af8a_ a.28.1.1 (A:) Actinorh 46.5 5.4 0.0004 23.4 2.1 25 15-39 59-83 (86)
2 d1f2da_ c.79.1.1 (A:) 1-aminoc 28.6 7.5 0.00055 25.5 0.7 26 62-87 281-306 (341)
3 d1j0aa_ c.79.1.1 (A:) 1-aminoc 28.4 6.4 0.00047 26.3 0.3 27 61-87 267-293 (325)
4 d1nq4a_ a.28.1.1 (A:) Oxytetra 24.7 16 0.0012 21.6 1.7 24 15-38 58-81 (95)
5 d1dzfa2 d.78.1.1 (A:144-215) E 19.8 10 0.00076 22.4 -0.0 20 52-71 1-20 (72)
6 d1tyza_ c.79.1.1 (A:) 1-aminoc 19.7 14 0.001 23.8 0.7 21 63-83 281-301 (338)
7 d1wiga2 g.39.1.3 (A:33-73) Act 18.4 12 0.00091 20.6 0.1 15 55-69 21-35 (41)
8 d1vkua_ a.28.1.1 (A:) Acyl car 17.9 19 0.0014 20.2 0.9 24 15-38 58-81 (85)
9 d1or5a_ a.28.1.1 (A:) Frenolic 14.9 17 0.0013 21.1 0.2 22 15-36 56-77 (82)
10 d2nxyb1 b.1.1.1 (B:1001-1097) 14.0 35 0.0026 19.1 1.4 16 9-24 15-30 (97)
No 1
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}
Probab=46.46 E-value=5.4 Score=23.43 Aligned_cols=25 Identities=32% Similarity=0.087 Sum_probs=21.8
Q ss_pred CCCCceeccCCCcccHHHHHHHHHH
Q psy6232 15 SIPDYLFFVSPSIYFLDDFILKQHA 39 (100)
Q Consensus 15 ~iPdyLF~~~p~~~~l~~f~~~~~~ 39 (100)
-+|+-.||+.|++..+.+|+....+
T Consensus 59 ~l~~~~~~~~~Tv~~l~~~i~~~l~ 83 (86)
T d2af8a_ 59 SIPDDVAGRVDTPRELLDLINGALA 83 (86)
T ss_dssp CCCCSTTTTCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHcCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987653
No 2
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}
Probab=28.64 E-value=7.5 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.1
Q ss_pred ccccccccccccccchhhhhhhhhhh
Q psy6232 62 ERLATTEKLFVRPMYDALLIDQSMSL 87 (100)
Q Consensus 62 eRLA~tEkLFv~p~Y~~~liDQsl~l 87 (100)
.++|.+|.+|+-|-|.+..+-=...|
T Consensus 281 ~~la~~eGI~veP~ys~~a~agl~~l 306 (341)
T d1f2da_ 281 RTCAEQEGVLTDPVYEGKSMQGLIAL 306 (341)
T ss_dssp HHHHHHHSCCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHhCcccChhhhHHHHHHHHHH
Confidence 46788999999999988776544444
No 3
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.38 E-value=6.4 Score=26.34 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.7
Q ss_pred cccccccccccccccchhhhhhhhhhh
Q psy6232 61 CERLATTEKLFVRPMYDALLIDQSMSL 87 (100)
Q Consensus 61 ~eRLA~tEkLFv~p~Y~~~liDQsl~l 87 (100)
+.+||.+|.+|+-|.|.|..+--.+.+
T Consensus 267 ~~~l~~~eGI~~eP~~s~~a~~~l~~~ 293 (325)
T d1j0aa_ 267 IRKVGTREGIILDPVYTGKAFYGLVDL 293 (325)
T ss_dssp HHHHHHHHSCCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCChhhHHHHHHHHHHH
Confidence 347899999999999999766544444
No 4
>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]}
Probab=24.69 E-value=16 Score=21.62 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=21.0
Q ss_pred CCCCceeccCCCcccHHHHHHHHH
Q psy6232 15 SIPDYLFFVSPSIYFLDDFILKQH 38 (100)
Q Consensus 15 ~iPdyLF~~~p~~~~l~~f~~~~~ 38 (100)
-||+..||+.|++..+.+|+....
T Consensus 58 ~l~~~~~~~~~Ti~~l~~~l~~~l 81 (95)
T d1nq4a_ 58 QLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp CSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred CCCHHHHhcCCCHHHHHHHHHHhc
Confidence 489999999999999999997754
No 5
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.82 E-value=10 Score=22.38 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=16.7
Q ss_pred HhhhccCccccccccccccc
Q psy6232 52 ITLHIWTPKCERLATTEKLF 71 (100)
Q Consensus 52 it~HiW~p~~eRLA~tEkLF 71 (100)
||-|...|+++.|..+|+-=
T Consensus 1 It~H~lVPkH~~l~~eE~~~ 20 (72)
T d1dzfa2 1 ITHHELVPKHIRLSSDEKRE 20 (72)
T ss_dssp GGGSTTSCEEEECCHHHHHH
T ss_pred CCcCccCCCeEEcCHHHHHH
Confidence 68899999999998877643
No 6
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}
Probab=19.73 E-value=14 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.1
Q ss_pred cccccccccccccchhhhhhh
Q psy6232 63 RLATTEKLFVRPMYDALLIDQ 83 (100)
Q Consensus 63 RLA~tEkLFv~p~Y~~~liDQ 83 (100)
++|..|.+++-|.|++..+--
T Consensus 281 ~l~~~eGI~~eP~~s~~a~a~ 301 (338)
T d1tyza_ 281 LCARTEGMLTDPVYEGKSMHG 301 (338)
T ss_dssp HHHHHHSCCCCTTTHHHHHHH
T ss_pred HHHHHhCCcCChHHHHHHHHH
Confidence 688899999999998765543
No 7
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.43 E-value=12 Score=20.60 Aligned_cols=15 Identities=47% Similarity=1.019 Sum_probs=12.9
Q ss_pred hccCccccccccccc
Q psy6232 55 HIWTPKCERLATTEK 69 (100)
Q Consensus 55 HiW~p~~eRLA~tEk 69 (100)
-||-|.|..-|++|+
T Consensus 21 ~IWHP~C~~~~~~E~ 35 (41)
T d1wiga2 21 SIWHPACRQAARTED 35 (41)
T ss_dssp EEECTTHHHHTSSSS
T ss_pred ceeCCcccccchhhc
Confidence 589999998888886
No 8
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=17.91 E-value=19 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=20.9
Q ss_pred CCCCceeccCCCcccHHHHHHHHH
Q psy6232 15 SIPDYLFFVSPSIYFLDDFILKQH 38 (100)
Q Consensus 15 ~iPdyLF~~~p~~~~l~~f~~~~~ 38 (100)
-||...|+++|++..+.+|+.+..
T Consensus 58 ~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (85)
T d1vkua_ 58 RIEDEEISKIRKVKDLIDIVIKKL 81 (85)
T ss_dssp CCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred CCCHHHHHHcCCHHHHHHHHHHHH
Confidence 478899999999999999988764
No 9
>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]}
Probab=14.91 E-value=17 Score=21.05 Aligned_cols=22 Identities=14% Similarity=-0.177 Sum_probs=19.1
Q ss_pred CCCCceeccCCCcccHHHHHHH
Q psy6232 15 SIPDYLFFVSPSIYFLDDFILK 36 (100)
Q Consensus 15 ~iPdyLF~~~p~~~~l~~f~~~ 36 (100)
-||+..+|+.|++..+-+|+..
T Consensus 56 ~l~~~~~~~~~Ti~~l~~~v~~ 77 (82)
T d1or5a_ 56 ALTDETVGRLGTPRELLDEVNT 77 (82)
T ss_dssp CCSHHHHHHCCCSHHHHHHHTT
T ss_pred cCCHHHHHcCCCHHHHHHHHHh
Confidence 4799999999999999998754
No 10
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.04 E-value=35 Score=19.07 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=13.3
Q ss_pred ccccccCCCCceeccC
Q psy6232 9 PCFFQNSIPDYLFFVS 24 (100)
Q Consensus 9 ~C~f~~~iPdyLF~~~ 24 (100)
||.+++..+.+++|.-
T Consensus 15 ~C~~s~~~~~~~~W~~ 30 (97)
T d2nxyb1 15 TCTASQKKSIQFHWKN 30 (97)
T ss_dssp CCBCSSSSCCCEEEEE
T ss_pred EEEEecCCCceEEEEE
Confidence 7999998888888853
Done!