BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6233
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 35/135 (25%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
++I G + V G L W+F +D D+GFGI+
Sbjct: 282 VQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIF---------------------- 319
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
+ K E R G + + P R + H G+ G+Y+L+FD
Sbjct: 320 LKKKMGERQRAGE-------------MTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFD 366
Query: 253 NSYSLWRSKTLYYRV 267
N+YS +K + + V
Sbjct: 367 NTYSFIHAKKVNFTV 381
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 35/135 (25%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
++I G + V G L W+F +D D+GFGI+
Sbjct: 282 VQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIF---------------------- 319
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
+ K E R G + + P R + H G+ G+Y+L+FD
Sbjct: 320 LKTKMGERQRAGE-------------MTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFD 366
Query: 253 NSYSLWRSKTLYYRV 267
N+YS +K + + V
Sbjct: 367 NTYSFIHAKKVNFTV 381
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 35/135 (25%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
++I G + V G L W+F +D D+GFGI+
Sbjct: 282 VQISRGSSHQVEYEILFPGCVLRWQFXSDGADVGFGIF---------------------- 319
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
+ K E R G + T+++ P R + H G+ G+Y+L+FD
Sbjct: 320 LKTKXGERQRAG----EXTEVL---------PNQRYNSHLVPEDGTLTCSDPGIYVLRFD 366
Query: 253 NSYSLWRSKTLYYRV 267
N+YS +K + + V
Sbjct: 367 NTYSFIHAKKVNFTV 381
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 126 KEGGDAIIKIGHGETVTVRVPTHEGG----SCLYWEFCTDHYDLGFGIYFEWNKSPTNQV 181
+ GGD ++KI G ++V V ++GG L + T YD G I N +P N +
Sbjct: 47 RAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGI 106
Query: 182 SV 183
V
Sbjct: 107 KV 108
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 140 TVTVRVPTHEGG-SCLYWEFCTDHYDLGFGIYFEWNKS 176
T TVR E G S YWEFC GFG+Y W K+
Sbjct: 276 TKTVRRIAEEFGFSLAYWEFCA-----GFGLYDRWTKT 308
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 140 TVTVRVPTHEGG-SCLYWEFCTDHYDLGFGIYFEWNKS 176
T TVR E G S YWEFC GFG+Y W K+
Sbjct: 276 TKTVRRIAEEFGFSLAYWEFCA-----GFGLYDRWTKT 308
>pdb|2W1Z|A Chain A, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity.
pdb|2W1Z|B Chain B, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity
Length = 368
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 122 EHIRKEGGDAIIKIGHG----ETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEW 173
EH+ ++G A+ IG G ET R+ + F D + LG IY+ W
Sbjct: 236 EHLVRDGASAVSPIGRGFAPPETTAERMLPYRQHHPTLMTFPFDTWTLGLAIYWIW 291
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 140 TVTVRVPTHEGG-SCLYWEFCTDHYDLGFGIYFEWNKS 176
T TVR E G S YWEFC GFG+Y W K+
Sbjct: 276 TKTVRRIAEEFGFSLAYWEFCA-----GFGLYDRWTKT 308
>pdb|3DZO|A Chain A, Crystal Structure Of A Rhoptry Kinase From Toxoplasma
Gondii
Length = 413
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 122 EHIRKEGGDAIIKIGHG----ETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEW 173
EH+ ++G A+ IG G ET R+ F D + LG IY+ W
Sbjct: 256 EHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW 311
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 90 EDQFPGNPEQQAV---LVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETV 141
E + P N Q V + Q GPA WT IK E I+KEG A + G V
Sbjct: 89 EARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFV 143
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 90 EDQFPGNPEQQAV---LVQIGPANMWTLTNIKSFKEHIRKEGGDAII 133
E + P N Q V + Q GPA WT IK E I+KEG A +
Sbjct: 89 EARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAV 135
>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
Length = 240
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 230 CHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSK 261
CH YAG H YPGE + D+S L ++K
Sbjct: 20 CHN--YAGGHVYPGEAFRVPVSDHSLHLSKAK 49
>pdb|1TZ9|A Chain A, Crystal Structure Of The Putative Mannonate Dehydratase
From Enterococcus Faecalis, Northeast Structural
Genomics Target Efr41
pdb|1TZ9|B Chain B, Crystal Structure Of The Putative Mannonate Dehydratase
From Enterococcus Faecalis, Northeast Structural
Genomics Target Efr41
Length = 367
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 92 QFPGNPEQQAVLVQIGPANMWTLTNIKSFKEHIRKEG 128
Q PG L+ P ++WT+ I++ K+ + +EG
Sbjct: 32 QIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEG 68
>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN
Anaphase-Promoting Complex
Length = 171
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 232 QEVYAGSHCYPGEGVYLLKFDNSYSLWRS 260
Q V++ S C PG GV L+ DN + W+S
Sbjct: 27 QAVWSLSSCKPGFGVDQLRDDNLETYWQS 55
>pdb|1B65|A Chain A, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|B Chain B, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|C Chain C, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|D Chain D, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|E Chain E, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
pdb|1B65|F Chain F, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold
Length = 375
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 205 SQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEG 245
++PR K RS + I P M+ + VYAG H + G G
Sbjct: 45 NEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,412,694
Number of Sequences: 62578
Number of extensions: 353286
Number of successful extensions: 907
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 24
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)