BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6233
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3P7|GCP60_HUMAN Golgi resident protein GCP60 OS=Homo sapiens GN=ACBD3 PE=1 SV=4
Length = 528
Score = 194 bits (493), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 118/169 (69%), Gaps = 6/169 (3%)
Query: 103 LVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDH 162
L I +MWT IK FKE I+++ D++I +G GE VTVRVPTHE GS L+WEF TD+
Sbjct: 366 LPVIAAPSMWTRPQIKDFKEKIQQDA-DSVITVGRGEVVTVRVPTHEEGSYLFWEFATDN 424
Query: 163 YDLGFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSII 222
YD+GFG+YFEW SP VSVHVSE+ D+ +++ K K N+ I
Sbjct: 425 YDIGFGVYFEWTDSPNTAVSVHVSESSDDDEEEEENIGCEE-----KAKKNANKPLLDEI 479
Query: 223 SPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYTR 271
P+ RRDCH+EVYAGSH YPG GVYLLKFDNSYSLWRSK++YYRVYYTR
Sbjct: 480 VPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR 528
>sp|Q7TNY6|GCP60_RAT Golgi resident protein GCP60 OS=Rattus norvegicus GN=Acbd3 PE=2
SV=3
Length = 526
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 5/169 (2%)
Query: 103 LVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDH 162
L I +MWT IK FKE IR++ D++I + GE VTVRVPTHE GS L+WEF TD
Sbjct: 363 LPVIAAPSMWTRPQIKDFKEKIRQDA-DSVITVRRGEVVTVRVPTHEEGSYLFWEFATDS 421
Query: 163 YDLGFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSII 222
YD+GFG+YFEW SP VSVHVSE+ D+ +++ + K K VN+ I
Sbjct: 422 YDIGFGVYFEWTDSPNAAVSVHVSESSDDEEEEEEENV----TCEEKAKKNVNKPLLDEI 477
Query: 223 SPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYTR 271
P+ RRDCH+EVYAGSH YPG GVYLLKFDNSYSLWRSK++YYRVYYTR
Sbjct: 478 VPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR 526
>sp|Q8BMP6|GCP60_MOUSE Golgi resident protein GCP60 OS=Mus musculus GN=Acbd3 PE=1 SV=3
Length = 525
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/169 (57%), Positives = 117/169 (69%), Gaps = 6/169 (3%)
Query: 103 LVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDH 162
L I +MWT IK FKE IR++ D++I + GE VTVRVPTHE GS L+WEF TD
Sbjct: 363 LPVIAAPSMWTRPQIKDFKEKIRQDA-DSVITVRRGEVVTVRVPTHEEGSYLFWEFATDS 421
Query: 163 YDLGFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSII 222
YD+GFG+YFEW SP VSVHVSE+ DE +++ + K K N+ I
Sbjct: 422 YDIGFGVYFEWTDSPNAAVSVHVSESSDEEEEEEENVTCE-----EKAKKNANKPLLDEI 476
Query: 223 SPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYTR 271
P+ RRDCH+EVYAGSH YPG GVYLLKFDNSYSLWRSK++YYRVYYTR
Sbjct: 477 VPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR 525
>sp|Q5R9S0|TMED8_PONAB Protein TMED8 OS=Pongo abelii GN=TMED8 PE=2 SV=1
Length = 326
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 106 IGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDL 165
+ P +WT +K FK + KE ++ + GE VT+RVPTH G + WEF TD YD+
Sbjct: 158 MAPPCIWTFAKVKEFKSKLGKEKNSRLV-VKRGEVVTIRVPTHPEGKRVCWEFATDDYDI 216
Query: 166 GFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSP----FSI 221
GFG+YF+W + ++V VS++ D+ +++ E P + +RS +
Sbjct: 217 GFGVYFDWTPVTSTDITVQVSDSCDDEDEEEEEEEEIEEPVPAGDVERGSRSSLRGRYGE 276
Query: 222 ISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT 270
+ P+ RRD H++V AGSH YPGEG+YLLKFDNSYSL R+KTLY+ +YYT
Sbjct: 277 VMPVYRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYT 325
>sp|Q3UHI4|TMED8_MOUSE Protein TMED8 OS=Mus musculus GN=Tmed8 PE=1 SV=1
Length = 326
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 106 IGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDL 165
+ P +WT +K FK + KE ++ + GE VT+RVPTH G + WEF TD YD+
Sbjct: 158 MAPPCVWTFAKVKEFKSKLGKEKNSRLV-VKRGEVVTIRVPTHPEGKRVCWEFATDDYDI 216
Query: 166 GFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQP----RKTTKIVNRSPFSI 221
GFG+YF+W + ++V VS++ ++ ++D E P + ++ R +
Sbjct: 217 GFGVYFDWTPVTSTDITVQVSDSSEDEEEEEDEEEEIEEPVPVGDVERGSRSSLRGRYGE 276
Query: 222 ISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT 270
+ P+ RRD H++V AGSH YPGEG+YLLKFDNSYSL R+KTLY+ +YYT
Sbjct: 277 VMPVYRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYT 325
>sp|Q6PL24|TMED8_HUMAN Protein TMED8 OS=Homo sapiens GN=TMED8 PE=1 SV=1
Length = 325
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
Query: 106 IGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDL 165
+ P +WT +K FK + KE ++ + GE VT+RVPTH G + WEF TD YD+
Sbjct: 157 MAPPCIWTFAKVKEFKSKLGKEKNSRLV-VKRGEVVTIRVPTHPEGKRVCWEFATDDYDI 215
Query: 166 GFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSP----FSI 221
GFG+YF+W + ++V VS++ D+ +++ E P + +RS +
Sbjct: 216 GFGVYFDWTPVTSTDITVQVSDSSDDEDEEEEEEEEIEEPVPAGDVERGSRSSLRGRYGE 275
Query: 222 ISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT 270
+ P+ RRD H++V AGSH YPGEG+YLLKFDNSYSL R+KTLY+ +YYT
Sbjct: 276 VMPVYRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYT 324
>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1
Length = 406
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 35/133 (26%)
Query: 135 IGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEMIS 194
+G G ++ V G L W+F +D D+GFG++ +
Sbjct: 284 VGRGSSLQVENEILFPGCVLRWQFASDGGDIGFGVFLK---------------------- 321
Query: 195 DKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNS 254
T+ G S R+ T+++ P R + H GS GVY+L+FDN+
Sbjct: 322 ---TKMGEQQSA-REMTEVL---------PSQRYNAHMVPEDGSLTCLQAGVYVLRFDNT 368
Query: 255 YSLWRSKTLYYRV 267
YS +K L Y V
Sbjct: 369 YSRMHAKKLSYTV 381
>sp|P49193|RALB_TODPA Retinal-binding protein OS=Todarodes pacificus PE=1 SV=2
Length = 343
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 42/133 (31%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
I +G G+ + V + + WE+ T+ +D+GFG++
Sbjct: 222 ITVGSGDKIYVEYEIENENTYIKWEYKTEEHDIGFGLF---------------------- 259
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
RK N + + PI R DC GSH G Y L FD
Sbjct: 260 ---------------RK-----NGDEWEEVVPIERTDCSIMTLDGSHKCKDPGTYALCFD 299
Query: 253 NSYSLWRSKTLYY 265
NS+S+ SK + Y
Sbjct: 300 NSFSMMTSKNVRY 312
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1
Length = 403
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 35/133 (26%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
+ +G G + V G L W+F +D D+GFG++ +
Sbjct: 282 VVVGRGSSHQVENEILFPGCVLRWQFASDGGDIGFGVFLK-------------------- 321
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
R G + +K ++V + P R + H GS GVY+L+FD
Sbjct: 322 --------TRMGER-QKAGEMVE------VLPSQRYNAHMVPEDGSLNCLKAGVYVLRFD 366
Query: 253 NSYSLWRSKTLYY 265
N+YSL +K + Y
Sbjct: 367 NTYSLLHTKKVGY 379
>sp|Q9UDX4|S14L3_HUMAN SEC14-like protein 3 OS=Homo sapiens GN=SEC14L3 PE=2 SV=1
Length = 400
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 46/201 (22%)
Query: 69 KRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIG--PANMWTLTNIKSFKEHIRK 126
K L++ ++ AQF D GNP+ + G P +M+ +K+ EH
Sbjct: 225 KEGLLKLISPEELPAQFGGTLTDP-DGNPKCLTKINYGGEIPKSMYVRDQVKTQYEHS-- 281
Query: 127 EGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVS 186
++I G + V G L W+F +D D+GFG++
Sbjct: 282 ------VQINRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVF---------------- 319
Query: 187 ETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGV 246
+ K E R G + + P R + H G+ GV
Sbjct: 320 ------LKTKMGERQRAGE-------------MTDVLPSQRYNAHMVPEDGNLTCSEAGV 360
Query: 247 YLLKFDNSYSLWRSKTLYYRV 267
Y+L+FDN+YS +K + + V
Sbjct: 361 YVLRFDNTYSFVHAKKVSFTV 381
>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2
Length = 403
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 35/135 (25%)
Query: 133 IKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEM 192
++I G + V G L W+F +D D+GFGI+
Sbjct: 282 VQISRGSSHQVEYEILFPGCVLRWQFMSDGSDIGFGIF---------------------- 319
Query: 193 ISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFD 252
+ K E R G + P R + H GS G+Y+L+FD
Sbjct: 320 LKTKVGERQRAGEMRE-------------VLPSQRYNAHLVPEDGSLTCSDPGIYVLRFD 366
Query: 253 NSYSLWRSKTLYYRV 267
N+YS +K + + V
Sbjct: 367 NTYSFIHAKKVSFTV 381
>sp|Q9Z1J8|S14L3_RAT SEC14-like protein 3 OS=Rattus norvegicus GN=Sec14l3 PE=1 SV=1
Length = 400
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 43/160 (26%)
Query: 108 PANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGF 167
P +M+ +K+ EH ++I G + V G L W+F +D D+GF
Sbjct: 265 PKSMYVRDQVKTQYEHS--------VQISRGSSHQVEYEILFPGCVLRWQFSSDGADIGF 316
Query: 168 GIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMR 227
G++ + K E + G + T+++ R
Sbjct: 317 GVF----------------------LKTKMGERQKAG----EMTEVLTSQ---------R 341
Query: 228 RDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRV 267
+ H GS GVY+L+FDN+YS +K + + V
Sbjct: 342 YNAHMVPEDGSLTCTEAGVYVLRFDNTYSFVHAKKVSFTV 381
>sp|Q8VDC1|FYCO1_MOUSE FYVE and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Fyco1 PE=1 SV=1
Length = 1437
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 43/133 (32%)
Query: 140 TVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYF-EWNKSPTNQVSVHVSETDDEMISDKDT 198
T+TV P G + W F +D + F + F E +P +Q V +
Sbjct: 1337 TITVAEP----GLTISWVFSSDPKSISFSVVFQETEDTPLDQCKVLI------------- 1379
Query: 199 ESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLW 258
P R + H+E G G+YLL FDN++S +
Sbjct: 1380 -------------------------PTTRCNSHKENIRGQLKVRIPGIYLLIFDNTFSRF 1414
Query: 259 RSKTLYYRVYYTR 271
SK + Y + R
Sbjct: 1415 ISKKVLYHLTVDR 1427
>sp|Q9BQS8|FYCO1_HUMAN FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=FYCO1 PE=1 SV=3
Length = 1478
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 221 IISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYTR 271
++ P R + H+E G G+Y+L FDN++S + SK ++Y + R
Sbjct: 1418 VLIPTTRCNSHKENIQGQLKVRTPGIYMLIFDNTFSRFVSKKVFYHLTVDR 1468
>sp|Q03D70|ADDB_PEDPA ATP-dependent helicase/deoxyribonuclease subunit B OS=Pediococcus
pentosaceus (strain ATCC 25745 / 183-1w) GN=rexB PE=3
SV=1
Length = 1192
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 49 VKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFR-----AYAEDQFPGNPEQ--QA 101
+ +E +N NEV+QE IE+ +RL+Q Q + QF + Q + +A
Sbjct: 858 ITTENLNFNEVNQE-QIEQIAKRLVQQMEQDQQFDQFNGTYRMGFLRKQLDRTVQAMVEA 916
Query: 102 VLVQIGPANMWTLTNIKSFKEHIRKEGGDAI-IKIGHGETVTVR 144
+ Q+ M + + + F + + G A+ K+G G+ + VR
Sbjct: 917 IFKQLARTRMRPIASEQLFGQIGSQSGLPALNFKVGEGKEINVR 960
>sp|C4L8X4|IF2_TOLAT Translation initiation factor IF-2 OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=infB PE=3 SV=1
Length = 910
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 11 IDLLDLKCILFKPYIDAHVAQKE--EENRKAREQIEREEKVKSEQVNGNEVSQETSIEEK 68
I++ K + + ID QKE E+ R+ E+ +EE K+EQ + ++ E+
Sbjct: 87 IEVRKSKTYVHRSVIDEAQQQKEAEEKARQEAEKTRQEELAKAEQARKDAEAKARKEAEE 146
Query: 69 KRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIGPANMWTLTNIKSFKEHIRKE 127
K R +A Q T A A D +P+++A V+ A+ N K E +RK+
Sbjct: 147 KARKEAEARKQSTEA-----AADDAAKSPDEKARKVK-AEADKRADENAKREAEALRKK 199
>sp|Q9Y4G2|PKHM1_HUMAN Pleckstrin homology domain-containing family M member 1 OS=Homo
sapiens GN=PLEKHM1 PE=1 SV=3
Length = 1056
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 26 DAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQF 85
D A E+ +R +E + K + V N +SQET I + L LN TY
Sbjct: 293 DLGTANAEDSDRSLQEVLLEFSKAQVNSVPTNGLSQETEIPTPQASLSLHGLNTSTYLHC 352
Query: 86 RAYAE 90
A AE
Sbjct: 353 EAPAE 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,590,823
Number of Sequences: 539616
Number of extensions: 4478461
Number of successful extensions: 23850
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 22771
Number of HSP's gapped (non-prelim): 967
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)