Query         psy6233
Match_columns 271
No_of_seqs    159 out of 301
Neff          4.8 
Searched_HMMs 29240
Date          Fri Aug 16 21:11:49 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy6233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6233hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1olm_A SEC14-like protein 2; l 100.0 1.4E-29 4.9E-34  238.9  15.0  122  106-270   263-384 (403)
  2 2cop_A Acyl-coenzyme A binding  96.4  0.0005 1.7E-08   55.1  -0.3   30    1-30     71-100 (109)
  3 3fp5_A Acyl-COA binding protei  88.4    0.15 5.1E-06   40.6   1.3   20    1-20     71-90  (106)
  4 2wnv_A C1Q chain A, complement  74.0     1.6 5.5E-05   34.9   2.3   25  229-253    30-54  (134)
  5 2wnv_B C1Q chain B, complement  72.7     1.8 6.1E-05   34.8   2.3   24  229-252    33-56  (136)
  6 2wnv_C C1Q chain C, complement  72.6     1.8 6.3E-05   34.5   2.3   24  229-252    34-57  (131)
  7 2ka3_A Emilin-1; C1Q-like doma  68.9     2.4 8.2E-05   35.3   2.3   23  229-251    43-65  (162)
  8 1gr3_A Collagen X; extracellul  68.2     6.5 0.00022   32.6   4.9   25  229-253    59-83  (160)
  9 3m86_A Amoebiasin-2; cysteine   63.2      50  0.0017   25.5  11.0   34  128-162    13-46  (111)
 10 1o91_A Collagen alpha 1(VIII)   62.0     9.8 0.00034   32.1   4.9   25  229-253    77-101 (178)
 11 4dou_A Adiponectin; single-cha  61.8      24 0.00082   33.8   8.1   95  129-253   254-360 (442)
 12 4dou_A Adiponectin; single-cha  56.8      50  0.0017   31.6   9.4   26  229-254   195-220 (442)
 13 4hcz_A PHD finger protein 1; p  51.7      11 0.00039   26.9   3.0   32  233-264    18-52  (58)
 14 4f3j_A Complement C1Q tumor ne  50.3     8.3 0.00028   31.0   2.4   24  229-252    32-55  (148)
 15 2dod_A Transcription elongatio  45.1      12 0.00041   28.1   2.4   30    1-30     14-44  (82)
 16 2eqj_A Metal-response element-  40.8      16 0.00054   26.8   2.3   41  221-264    19-62  (66)
 17 1nqj_A Class 1 collagenase; be  38.8      44  0.0015   26.5   5.0   31  234-270    88-118 (119)
 18 1h3z_A Hypothetical 62.8 kDa p  37.6      17 0.00059   28.0   2.3   22  243-264    45-68  (109)
 19 2m0o_A PHD finger protein 1; t  37.5      18 0.00063   27.2   2.3   32  232-263    40-74  (79)
 20 2l89_A PWWP domain-containing   33.4      16 0.00056   28.2   1.6   22  243-264    42-65  (108)
 21 3obv_E Protein diaphanous homo  33.2      20 0.00068   34.5   2.4   22   15-36    363-384 (457)
 22 2xk0_A Polycomb protein PCL; t  32.8      24 0.00081   26.0   2.2   33  232-264    29-62  (69)
 23 1ccz_A Protein (CD58); LFA-3,   32.8 1.2E+02  0.0041   23.6   6.7   29  132-160     4-32  (171)
 24 2lpy_A Matrix protein P10; GAG  32.5      20  0.0007   29.1   2.0   18    5-22     28-45  (124)
 25 1uzc_A Hypothetical protein FL  31.9      25 0.00087   25.5   2.3   28    2-29     13-41  (71)
 26 1khc_A DNA cytosine-5 methyltr  28.7      23  0.0008   29.1   1.8   22  243-264    44-67  (147)
 27 1bax_A M-PMV MA, M-PMV matrix   28.5      31  0.0011   26.8   2.3   18    5-22     29-46  (94)
 28 2b7e_A PRE-mRNA processing pro  27.7      29 0.00098   24.7   1.9   16    2-17      1-16  (59)
 29 2cio_B Inhibitor of cysteine p  27.4 2.2E+02  0.0075   22.2  10.7   33  128-161    10-42  (121)
 30 1v9d_A Diaphanous protein homo  27.1      30   0.001   31.5   2.5   21   15-35    292-312 (340)
 31 2gcl_A Hypothetical 63.0 kDa p  26.8      47  0.0016   29.9   3.6   34  236-270    30-63  (261)
 32 3jqw_A COLH protein, collagena  26.7 2.3E+02  0.0079   22.2  10.7   33  234-270    84-116 (121)
 33 2g3r_A Tumor suppressor P53-bi  25.1      55  0.0019   26.5   3.3   31  233-263    20-52  (123)
 34 1rj8_A Ectodysplasin-A isoform  23.6      32  0.0011   28.4   1.7   18  232-249    61-78  (164)
 35 1ri0_A Hepatoma-derived growth  22.0      30   0.001   26.9   1.1   23  242-264    50-74  (110)
 36 2daq_A WHSC1L1 protein, isofor  20.7      30   0.001   26.4   0.9   22  243-264    45-68  (110)

No 1  
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.96  E-value=1.4e-29  Score=238.92  Aligned_cols=122  Identities=24%  Similarity=0.426  Sum_probs=99.7

Q ss_pred             ccCCCcccccchhhhHHhhhccCCceeEEEccCceEEEEEEeecCCCEEEEEEEeeCccEEEEEEEEecCCCCCcceecc
Q psy6233         106 IGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHV  185 (271)
Q Consensus       106 ~vP~s~wt~~~i~~fk~~i~~~~~~~~i~V~~Get~tV~V~v~~~Gs~L~WeF~Td~yDIGFGV~fe~~~~~s~~vsv~v  185 (271)
                      .+|.++|......        +++...++|++|++++|+|+|..+|++|.|+|+|+++||||||+|.....++       
T Consensus       263 ~vp~~~~~~~~~~--------~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~~~~~-------  327 (403)
T 1olm_A          263 DIPRKYYVRDQVK--------QQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGER-------  327 (403)
T ss_dssp             CCCGGGCSCSSCC--------CCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----CC-------
T ss_pred             CCCcccccCCCcc--------cccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecccccc-------
Confidence            4566666554421        1244569999999999999999999999999999999999999997421100       


Q ss_pred             ccCccccccCcCCcCCCCCCCCCccccccCCCCceeeeeCeeeccccceecceEEeccceEEEEEEecCccceeeceeEE
Q psy6233         186 SETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYY  265 (271)
Q Consensus       186 ~eS~d~~~~~~~~e~g~~~~~~~~~~~~~~~~~~~eIvP~~R~~sh~~~~~Gs~~~~~~GvY~L~FDNSYS~~RsK~L~Y  265 (271)
                                     .     .        .....+|+|+.|++||.+++.|+|.|++||+|+|+|||||||||+|+|+|
T Consensus       328 ---------------~-----~--------~~~~~~v~p~~r~~~~~~~~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y  379 (403)
T 1olm_A          328 ---------------Q-----R--------AGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNF  379 (403)
T ss_dssp             ---------------C-----C--------GGGSEEEEEEEEECTTTSCEEEEEECCSCEEEEEEEECTTCCCCSEEEEE
T ss_pred             ---------------c-----C--------CCcceEEeeeeeecCccccccCEEEcCCCeEEEEEEeccccceeceEEEE
Confidence                           0     0        02367899999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy6233         266 RVYYT  270 (271)
Q Consensus       266 ~V~~t  270 (271)
                      +|.+.
T Consensus       380 ~v~v~  384 (403)
T 1olm_A          380 TVEVL  384 (403)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99875


No 2  
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37  E-value=0.0005  Score=55.10  Aligned_cols=30  Identities=20%  Similarity=0.241  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHHHhhhCCCchhHHHHHHh
Q psy6233           1 MSSKDAMSNFIDLLDLKCILFKPYIDAHVA   30 (271)
Q Consensus         1 ~s~~~am~~fi~ll~~~cp~f~~~v~a~~~   30 (271)
                      ||+++||..||+||+.+||.|.+++.+|+.
T Consensus        71 ms~eeAm~~YI~lv~~l~~~~~~~~~~~~~  100 (109)
T 2cop_A           71 SSPSQAMQEYIAVVKKLDPGWNPQIPEKKG  100 (109)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcccchhccC
Confidence            899999999999999999999999876653


No 3  
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=88.42  E-value=0.15  Score=40.56  Aligned_cols=20  Identities=15%  Similarity=0.026  Sum_probs=18.7

Q ss_pred             CChHHHHHHHHHHHhhhCCC
Q psy6233           1 MSSKDAMSNFIDLLDLKCIL   20 (271)
Q Consensus         1 ~s~~~am~~fi~ll~~~cp~   20 (271)
                      ||+++||..||++|+.+||-
T Consensus        71 mS~eeA~~~YI~~v~~l~~~   90 (106)
T 3fp5_A           71 TSKEVAYQKYVEKLLEILKK   90 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999874


No 4  
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=73.98  E-value=1.6  Score=34.86  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             ccccceecceEEeccceEEEEEEec
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFDN  253 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FDN  253 (271)
                      .-|..+..|.++||.||+|.+.|-=
T Consensus        30 G~~yn~~TG~Ftap~~G~Y~Fs~~~   54 (134)
T 2wnv_A           30 EEPYQNHSGRFVCTVPGYYYFTFQV   54 (134)
T ss_dssp             TSCEETTTTEEECCSCEEEEEEEEE
T ss_pred             CCCccCCCCEEECeeCCEEEEEEEE
Confidence            5578889999999999999999853


No 5  
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=72.75  E-value=1.8  Score=34.79  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             ccccceecceEEeccceEEEEEEe
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFD  252 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FD  252 (271)
                      .-|..+..|.++||.||+|.+.|.
T Consensus        33 G~~yn~~TG~Ftap~~G~Y~Fs~~   56 (136)
T 2wnv_B           33 NNNYEPRSGKFTCKVPGLYYFTYH   56 (136)
T ss_dssp             TSCEETTTTEEECSSCEEEEEEEE
T ss_pred             CCcccCCCCEEECCcCeEEEEEEE
Confidence            557888999999999999999985


No 6  
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=72.57  E-value=1.8  Score=34.46  Aligned_cols=24  Identities=13%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             ccccceecceEEeccceEEEEEEe
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFD  252 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FD  252 (271)
                      .-|..+..|.++||.||+|.+.|.
T Consensus        34 G~~yn~~TG~Ftap~~G~Y~Fs~~   57 (131)
T 2wnv_C           34 QGDYDTSTGKFTCKVPGLYYFVYH   57 (131)
T ss_dssp             TCCEETTTTEEECSSCEEEEEEEE
T ss_pred             CCCccCCCCEEEcccCCEEEEEEE
Confidence            457788899999999999999996


No 7  
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=68.85  E-value=2.4  Score=35.29  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.9

Q ss_pred             ccccceecceEEeccceEEEEEE
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKF  251 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~F  251 (271)
                      .-+..+..|.++||.||+|.+.|
T Consensus        43 G~~yn~~TG~FTaPv~GvY~Fsf   65 (162)
T 2ka3_A           43 GGYYDPETGVFTAPLAGRYLLSA   65 (162)
T ss_dssp             SCCEETTTTEEECCCCEEEEEEE
T ss_pred             CCceECCCCEEECCCCeEEEEEE
Confidence            45788899999999999999999


No 8  
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=68.16  E-value=6.5  Score=32.60  Aligned_cols=25  Identities=16%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             ccccceecceEEeccceEEEEEEec
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFDN  253 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FDN  253 (271)
                      .-|..+..|.++||.||+|.+.|.=
T Consensus        59 Gn~yn~~TG~FtaPv~GvY~Fsft~   83 (160)
T 1gr3_A           59 QQHYDPRTGIFTCQIPGIYYFSYHV   83 (160)
T ss_dssp             TCCEETTTTEEECSSCEEEEEEEEE
T ss_pred             CCceeCCCCEEEcccCCEEEEEEEE
Confidence            4567888999999999999999973


No 9  
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=63.15  E-value=50  Score=25.51  Aligned_cols=34  Identities=12%  Similarity=0.293  Sum_probs=28.6

Q ss_pred             CCceeEEEccCceEEEEEEeecCCCEEEEEEEeeC
Q psy6233         128 GGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDH  162 (271)
Q Consensus       128 ~~~~~i~V~~Get~tV~V~v~~~Gs~L~WeF~Td~  162 (271)
                      ++...|+|..|+++.|.++-. +.+-..|.+...+
T Consensus        13 d~g~~I~v~~Ge~~~I~L~~N-ptTGY~W~~~~~~   46 (111)
T 3m86_A           13 EDHATLHISFNDLIKIQLRTN-PSTGYAWNIEYPT   46 (111)
T ss_dssp             GTTCEEEECTTCEEEEEEEEC-GGGTCEEEEECCT
T ss_pred             HCCcEEEEcCCCEEEEEECCC-CCCCeEEEEecCC
Confidence            356799999999999999954 6777999998764


No 10 
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=61.97  E-value=9.8  Score=32.09  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             ccccceecceEEeccceEEEEEEec
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFDN  253 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FDN  253 (271)
                      .-+..+..|.++||.+|+|.+.|.=
T Consensus        77 Gn~Yn~~TG~FTaPv~GvY~Fsft~  101 (178)
T 1o91_A           77 RQNYNPQTGIFTCEVPGVYYFAYHV  101 (178)
T ss_dssp             TTCEETTTTEEECCSCEEEEEEEEE
T ss_pred             CCceeCCCCEEEcccCeEEEEEEEE
Confidence            5577888999999999999999973


No 11 
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=61.77  E-value=24  Score=33.80  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             CceeEEEccCceEEEEEEeecCCCEEEEEEEeeCccEEEEEEEEecCCCCC--------cceeccccCccccccCcCCcC
Q psy6233         129 GDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTN--------QVSVHVSETDDEMISDKDTES  200 (271)
Q Consensus       129 ~~~~i~V~~Get~tV~V~v~~~Gs~L~WeF~Td~yDIGFGV~fe~~~~~s~--------~vsv~v~eS~d~~~~~~~~e~  200 (271)
                      +..++.+.+|+.+.|++.-...+.-|+.   ....|+-|+=|.--.+..+.        +.++....             
T Consensus       254 ~s~vL~L~~GD~Vwl~l~~~~~~~~i~~---~~~~~stFSGfLl~~~~~pg~~~~~~~~AFsa~~~~-------------  317 (442)
T 4dou_A          254 GSVLLHLEVGDQVWLQVYGEGERNGLYA---DNDNDSTFTGFLLYHDTNPGEGAYVYRSAFSVGLET-------------  317 (442)
T ss_dssp             EEEEEEECTTCEEEEEECSSSCCEEEEC---BTTBCCEEEEEEEEECCCC----CCCCCEEEEECSC-------------
T ss_pred             ceEEEEECCCCEEEEEEecCcccceEec---CCCCCceeeEEEEecccccCCCCCCCcEEEEEEeCC-------------
Confidence            4467899999999999842212234543   23456888766654332220        01111110             


Q ss_pred             CCCCCCCCccccccCCCCceeeeeCeee----ccccceecceEEeccceEEEEEEec
Q psy6233         201 GRTGSQPRKTTKIVNRSPFSIISPIMRR----DCHQEVYAGSHCYPGEGVYLLKFDN  253 (271)
Q Consensus       201 g~~~~~~~~~~~~~~~~~~~eIvP~~R~----~sh~~~~~Gs~~~~~~GvY~L~FDN  253 (271)
                                    +.+....+||-.+.    .-|..+..|.++||.||+|.+-|.=
T Consensus       318 --------------~~~~~~~~i~Fd~v~~N~G~~y~~~tG~Ftap~~G~Y~Fs~~~  360 (442)
T 4dou_A          318 --------------YVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHI  360 (442)
T ss_dssp             --------------C--CTTSCCCCCEEEECTTCCEETTTTEEECSSCEEEEEEEEE
T ss_pred             --------------CCCCCCccEEcCEEEECCCCCcCCCCCeEeCccCeEEEEEEEE
Confidence                          00111233444443    4567889999999999999999863


No 12 
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=56.77  E-value=50  Score=31.56  Aligned_cols=26  Identities=15%  Similarity=0.289  Sum_probs=22.8

Q ss_pred             ccccceecceEEeccceEEEEEEecC
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFDNS  254 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FDNS  254 (271)
                      .-|..+..|.++||-||+|.+.|.=+
T Consensus       195 g~~Yn~~TG~Ftcpv~GvY~Fs~~~~  220 (442)
T 4dou_A          195 QNHYDGSTGKFHCNIPGLYYFAYHIT  220 (442)
T ss_dssp             TCCEETTTTEEECCSCEEEEEEEEEE
T ss_pred             CCCccCCCCeEeCccceEEEEEEEEE
Confidence            45778899999999999999999843


No 13 
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.75  E-value=11  Score=26.85  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             ceecceEEe--ccceEEEEEE-ecCccceeeceeE
Q psy6233         233 EVYAGSHCY--PGEGVYLLKF-DNSYSLWRSKTLY  264 (271)
Q Consensus       233 ~~~~Gs~~~--~~~GvY~L~F-DNSYS~~RsK~L~  264 (271)
                      ..|-|.+.-  ...+.|+++| |||-+|..-|.|.
T Consensus        18 ~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~   52 (58)
T 4hcz_A           18 LLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS   52 (58)
T ss_dssp             CEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred             CEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence            457787776  5666999997 8999998877664


No 14 
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=50.26  E-value=8.3  Score=31.03  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             ccccceecceEEeccceEEEEEEe
Q psy6233         229 DCHQEVYAGSHCYPGEGVYLLKFD  252 (271)
Q Consensus       229 ~sh~~~~~Gs~~~~~~GvY~L~FD  252 (271)
                      ..|.-+-.|.++||-+|+|.+-|.
T Consensus        32 G~~yn~sTG~FTaPv~G~Y~Fs~~   55 (148)
T 4f3j_A           32 QGHYDAVTGKFTCQVPGVYYFAVH   55 (148)
T ss_dssp             TCCEETTTTEEECCSCEEEEEEEE
T ss_pred             CCCccCCCCeEECCcceEEEEEEE
Confidence            567788899999999999999874


No 15 
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=45.13  E-value=12  Score=28.08  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             CChHHHHHHHHHHHhh-hCCCchhHHHHHHh
Q psy6233           1 MSSKDAMSNFIDLLDL-KCILFKPYIDAHVA   30 (271)
Q Consensus         1 ~s~~~am~~fi~ll~~-~cp~f~~~v~a~~~   30 (271)
                      +|+++|+..|.+||+. -++.|.+|=.+.++
T Consensus        14 ~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~   44 (82)
T 2dod_A           14 VPLEARMKQFKDMLLERGVSAFSTWEKELHK   44 (82)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCSSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCcCCCCCHHHHHHH
Confidence            5899999999999976 47888888665543


No 16 
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=40.79  E-value=16  Score=26.75  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             eeeeCeeeccccceecceEEecc--ceEEEEEE-ecCccceeeceeE
Q psy6233         221 IISPIMRRDCHQEVYAGSHCYPG--EGVYLLKF-DNSYSLWRSKTLY  264 (271)
Q Consensus       221 eIvP~~R~~sh~~~~~Gs~~~~~--~GvY~L~F-DNSYS~~RsK~L~  264 (271)
                      .|+..+ .|  -..|.|.+.--.  .|+|+++| |||-+|..-|-|.
T Consensus        19 dVLA~w-tD--Gl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~   62 (66)
T 2eqj_A           19 DVLARW-SD--GLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQ   62 (66)
T ss_dssp             EEEEEC-TT--SCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred             EEEEEE-cc--CcEEEeEEEEEccCCcEEEEEEccCCEEEEEeeccc
Confidence            444433 34  467888887543  69999996 9999998877653


No 17 
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=38.83  E-value=44  Score=26.54  Aligned_cols=31  Identities=16%  Similarity=0.106  Sum_probs=23.9

Q ss_pred             eecceEEeccceEEEEEEecCccceeeceeEEEEEEe
Q psy6233         234 VYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT  270 (271)
Q Consensus       234 ~~~Gs~~~~~~GvY~L~FDNSYS~~RsK~L~Y~V~~t  270 (271)
                      ...|++... ||+|.|..-.   .  +.+-.|.+.+.
T Consensus        88 ~~~~~~~~~-pGkYYl~Vy~---y--~~~g~Y~l~v~  118 (119)
T 1nqj_A           88 KVSNKVKLR-PGKYYLLVYK---Y--SGSGNYELRVN  118 (119)
T ss_dssp             EEEEEEEEC-SEEEEEEEEE---E--ESCEEEEEEEE
T ss_pred             cEEEEEEcC-CcEEEEEEEE---e--CCCceEEEEEe
Confidence            355788776 9999998855   2  68899998774


No 18 
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=37.63  E-value=17  Score=27.95  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             cceEEEEEE--ecCccceeeceeE
Q psy6233         243 GEGVYLLKF--DNSYSLWRSKTLY  264 (271)
Q Consensus       243 ~~GvY~L~F--DNSYS~~RsK~L~  264 (271)
                      .++.|.+.|  ||+|+|...+.|.
T Consensus        45 ~~~~~~V~FFg~~~~aWv~~~~l~   68 (109)
T 1h3z_A           45 AGTFYPVIFFPNKEYLWTGSDSLT   68 (109)
T ss_dssp             SSCEEEEEETTTTCCEEEEGGGEE
T ss_pred             CCCEEEEEEcCCCCEEEECHHHee
Confidence            378999999  9999999988774


No 19 
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=37.49  E-value=18  Score=27.23  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             cceecceEE--eccceEEEEEE-ecCccceeecee
Q psy6233         232 QEVYAGSHC--YPGEGVYLLKF-DNSYSLWRSKTL  263 (271)
Q Consensus       232 ~~~~~Gs~~--~~~~GvY~L~F-DNSYS~~RsK~L  263 (271)
                      -..|-|.++  -...+.|+++| |||-+|..-|.|
T Consensus        40 GlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi   74 (79)
T 2m0o_A           40 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDI   74 (79)
T ss_dssp             SCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTB
T ss_pred             CCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeecc
Confidence            345778887  45588899997 899999877655


No 20 
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=33.36  E-value=16  Score=28.25  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=19.4

Q ss_pred             cceEEEEEE--ecCccceeeceeE
Q psy6233         243 GEGVYLLKF--DNSYSLWRSKTLY  264 (271)
Q Consensus       243 ~~GvY~L~F--DNSYS~~RsK~L~  264 (271)
                      .++.|.+.|  +|+|.|+..+.|.
T Consensus        42 ~~~~~~V~FFg~~~~aWv~~~~l~   65 (108)
T 2l89_A           42 FNVLYKVLFFPDFNFAWVKRNSVK   65 (108)
T ss_dssp             EEEEEEEEETTTTEEEEECGGGEE
T ss_pred             CCCeEEEEECCCCCEEEEchhhce
Confidence            578999999  9999999998874


No 21 
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=33.21  E-value=20  Score=34.49  Aligned_cols=22  Identities=5%  Similarity=0.096  Sum_probs=14.2

Q ss_pred             hhhCCCchhHHHHHHhhHHHHH
Q psy6233          15 DLKCILFKPYIDAHVAQKEEEN   36 (271)
Q Consensus        15 ~~~cp~f~~~v~a~~~~~ee~~   36 (271)
                      +.+|..|..|+.+-++-.+|..
T Consensus       363 ~eFF~~~~~F~~~fkkA~~eN~  384 (457)
T 3obv_E          363 EEFFMDLHNFRNMFLQAVKENQ  384 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677788888777444433


No 22 
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=32.85  E-value=24  Score=26.02  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             cceecceEEeccceEEEEEE-ecCccceeeceeE
Q psy6233         232 QEVYAGSHCYPGEGVYLLKF-DNSYSLWRSKTLY  264 (271)
Q Consensus       232 ~~~~~Gs~~~~~~GvY~L~F-DNSYS~~RsK~L~  264 (271)
                      --.|-|.++-...+.+++.| |||-+|---|.|.
T Consensus        29 G~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~   62 (69)
T 2xk0_A           29 GRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLR   62 (69)
T ss_dssp             SCEEEEEEEEECSSCEEEEETTCCEEEECTTTEE
T ss_pred             CCEEEEEEEecCCceEEEEecCCcceeeeHHHHH
Confidence            56788999888999999998 7888887666653


No 23 
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=32.79  E-value=1.2e+02  Score=23.62  Aligned_cols=29  Identities=21%  Similarity=0.083  Sum_probs=24.0

Q ss_pred             eEEEccCceEEEEEEeecCCCEEEEEEEe
Q psy6233         132 IIKIGHGETVTVRVPTHEGGSCLYWEFCT  160 (271)
Q Consensus       132 ~i~V~~Get~tV~V~v~~~Gs~L~WeF~T  160 (271)
                      .+.+..|+.++++..+..+...|.|.|..
T Consensus         4 ~v~~~~G~~VtL~c~~~~~~~~i~W~~~~   32 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQK   32 (171)
T ss_dssp             EEEEETTCCEEECCCCSSCCSCEEEEETT
T ss_pred             EEEEEcCCCEEEcCCCCCCcceEEEEeCC
Confidence            57888999999998876677889998854


No 24 
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=32.55  E-value=20  Score=29.10  Aligned_cols=18  Identities=22%  Similarity=0.530  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhhhCCCch
Q psy6233           5 DAMSNFIDLLDLKCILFK   22 (271)
Q Consensus         5 ~am~~fi~ll~~~cp~f~   22 (271)
                      .-+.+|..-++++||.|.
T Consensus        28 k~L~~Ff~~i~~~cPWFp   45 (124)
T 2lpy_A           28 ADLLKFFDFVKDTCPWFP   45 (124)
T ss_dssp             HHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHhCCCcC
Confidence            347789999999999995


No 25 
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=31.93  E-value=25  Score=25.54  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             ChHHHHHHHHHHHhhh-CCCchhHHHHHH
Q psy6233           2 SSKDAMSNFIDLLDLK-CILFKPYIDAHV   29 (271)
Q Consensus         2 s~~~am~~fi~ll~~~-cp~f~~~v~a~~   29 (271)
                      |+++|...|.+||+.. ++.+.+|=.+.+
T Consensus        13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~   41 (71)
T 1uzc_A           13 TKEEAKQAFKELLKEKRVPSNASWEQAMK   41 (71)
T ss_dssp             SHHHHHHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCcCCCCCHHHHHH
Confidence            7899999999999764 777777755544


No 26 
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=28.68  E-value=23  Score=29.07  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.0

Q ss_pred             cceEEEEEE--ecCccceeeceeE
Q psy6233         243 GEGVYLLKF--DNSYSLWRSKTLY  264 (271)
Q Consensus       243 ~~GvY~L~F--DNSYS~~RsK~L~  264 (271)
                      .+|.|.|.|  ||+|+|+..+.|.
T Consensus        44 ~~~~~~V~FFG~~~~awv~~~~L~   67 (147)
T 1khc_A           44 MPGMRWVQWFGDGKFSEISADKLV   67 (147)
T ss_dssp             CTTEEEEEETTTCCEEEEEGGGCE
T ss_pred             CCCeEEEEEecCCCEEEEcHHHCc
Confidence            468999998  9999999998875


No 27 
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.46  E-value=31  Score=26.79  Aligned_cols=18  Identities=22%  Similarity=0.530  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhhhCCCch
Q psy6233           5 DAMSNFIDLLDLKCILFK   22 (271)
Q Consensus         5 ~am~~fi~ll~~~cp~f~   22 (271)
                      .....|..-++++||-|-
T Consensus        29 ~~L~~Ff~fi~~~cPWFp   46 (94)
T 1bax_A           29 ADLLKFFDFVKDTCPWFP   46 (94)
T ss_pred             HHHHHHHHHHHHhCCCcC
Confidence            446789999999999995


No 28 
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.72  E-value=29  Score=24.71  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=13.3

Q ss_pred             ChHHHHHHHHHHHhhh
Q psy6233           2 SSKDAMSNFIDLLDLK   17 (271)
Q Consensus         2 s~~~am~~fi~ll~~~   17 (271)
                      .+++|..+|++||.+.
T Consensus         1 ~~eEae~aF~~lL~~~   16 (59)
T 2b7e_A            1 GAMEAEKEFITMLKEN   16 (59)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHc
Confidence            4689999999999764


No 29 
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=27.43  E-value=2.2e+02  Score=22.17  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             CCceeEEEccCceEEEEEEeecCCCEEEEEEEee
Q psy6233         128 GGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTD  161 (271)
Q Consensus       128 ~~~~~i~V~~Get~tV~V~v~~~Gs~L~WeF~Td  161 (271)
                      ++...|+|..|+++.|.++-. +++--.|.+...
T Consensus        10 ~n~~ti~l~~Ge~~~I~L~~N-PtTGY~W~~~~~   42 (121)
T 2cio_B           10 DNNKTIRMVIGETFTIELESN-PTTGYTWLRSGL   42 (121)
T ss_pred             hCCcEEEEcCCCEEEEEeCCC-CCCCeEEEEecC
Confidence            356789999999999999854 788899999874


No 30 
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=27.11  E-value=30  Score=31.53  Aligned_cols=21  Identities=5%  Similarity=0.089  Sum_probs=13.1

Q ss_pred             hhhCCCchhHHHHHHhhHHHH
Q psy6233          15 DLKCILFKPYIDAHVAQKEEE   35 (271)
Q Consensus        15 ~~~cp~f~~~v~a~~~~~ee~   35 (271)
                      +..|..|..|+..-++-.+|.
T Consensus       292 ~~fF~~~~~F~~~f~~a~~en  312 (340)
T 1v9d_A          292 EEFFMDLHNFRNMFLQAVKEN  312 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345556777888777744443


No 31 
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=26.75  E-value=47  Score=29.89  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             cceEEeccceEEEEEEecCccceeeceeEEEEEEe
Q psy6233         236 AGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT  270 (271)
Q Consensus       236 ~Gs~~~~~~GvY~L~FDNSYS~~RsK~L~Y~V~~t  270 (271)
                      .-++..| .|.|.|.+=+++=.+|.|+--|.|.|+
T Consensus        30 dv~~ltP-RGrydi~~~~~~lrl~gkt~dyki~~~   63 (261)
T 2gcl_A           30 DVFFTTP-RGRYDIDIYKNSIRLRGKTYEYKLQHR   63 (261)
T ss_dssp             EEEEEET-TEEEEEEECSSEEEEEESSCEEEEEGG
T ss_pred             CceEEcC-CCceEEEEecCcEEEeCCcccceechh
Confidence            4467778 999999999999899999999999875


No 32 
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=26.69  E-value=2.3e+02  Score=22.19  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             eecceEEeccceEEEEEEecCccceeeceeEEEEEEe
Q psy6233         234 VYAGSHCYPGEGVYLLKFDNSYSLWRSKTLYYRVYYT  270 (271)
Q Consensus       234 ~~~Gs~~~~~~GvY~L~FDNSYS~~RsK~L~Y~V~~t  270 (271)
                      ...|++..+.||+|.|..-+ |   ...+..|.+.+.
T Consensus        84 ~~~~~~~~~~pGkYYl~Vy~-y---~~~~g~Y~l~i~  116 (121)
T 3jqw_A           84 NLSGKFKADKPGRYYIHLYM-F---NGSYMPYRINIE  116 (121)
T ss_dssp             EEEEEEEECSCEEEEEEEEE-E---ECSCEEEEEEEE
T ss_pred             EEEEEEEeCCCeeEEEEEEE-e---cCCCccEEEEEE
Confidence            35788899999999998865 2   345778887653


No 33 
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=25.10  E-value=55  Score=26.55  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=25.8

Q ss_pred             ceecceE-EeccceEEEEEEecCccc-eeecee
Q psy6233         233 EVYAGSH-CYPGEGVYLLKFDNSYSL-WRSKTL  263 (271)
Q Consensus       233 ~~~~Gs~-~~~~~GvY~L~FDNSYS~-~RsK~L  263 (271)
                      --|.|.+ ...+.|.|.|.||-.++. .++|.|
T Consensus        20 ~yYpG~V~~~~~~~ky~V~FdDg~~~~v~~k~i   52 (123)
T 2g3r_A           20 YFYSGKITRDVGAGKYKLLFDDGYECDVLGKDI   52 (123)
T ss_dssp             CEEEEEEEEEEETTEEEEEETTSCEEEEEGGGE
T ss_pred             cCcccEEEEeccCCeEEEEEcCCCeeEeecceE
Confidence            4699999 459999999999999887 666655


No 34 
>1rj8_A Ectodysplasin-A isoform EDA-A2; TNF domain, jelly roll, splice variant, trimer, hormone-GROW complex; 2.23A {Homo sapiens} SCOP: b.22.1.1 PDB: 1rj7_A
Probab=23.55  E-value=32  Score=28.45  Aligned_cols=18  Identities=17%  Similarity=0.250  Sum_probs=15.7

Q ss_pred             cceecceEEeccceEEEE
Q psy6233         232 QEVYAGSHCYPGEGVYLL  249 (271)
Q Consensus       232 ~~~~~Gs~~~~~~GvY~L  249 (271)
                      .....|.++|+.+|.|.|
T Consensus        61 ~~~~~G~l~V~~~GlYyv   78 (164)
T 1rj8_A           61 LHPRSGELEVLVDGTYFI   78 (164)
T ss_dssp             ECTTTCCEEECSCEEEEE
T ss_pred             eEecCCEEEeCcCeEEEE
Confidence            455689999999999998


No 35 
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=21.96  E-value=30  Score=26.94  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             ccceEEEEEE--ecCccceeeceeE
Q psy6233         242 PGEGVYLLKF--DNSYSLWRSKTLY  264 (271)
Q Consensus       242 ~~~GvY~L~F--DNSYS~~RsK~L~  264 (271)
                      ..++.|.+.|  ||+|+|...+.|.
T Consensus        50 ~~~~~~~V~FFGt~~~awv~~~~l~   74 (110)
T 1ri0_A           50 STANKYQVFFFGTHETAFLGPKDLF   74 (110)
T ss_dssp             CCSSCEEEEETTTTEEEEECSTTEE
T ss_pred             CCCCEEEEEEecCCCEEEECHHHcc
Confidence            3578899999  9999999888764


No 36 
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=20.66  E-value=30  Score=26.45  Aligned_cols=22  Identities=14%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             cceEEEEEE--ecCccceeeceeE
Q psy6233         243 GEGVYLLKF--DNSYSLWRSKTLY  264 (271)
Q Consensus       243 ~~GvY~L~F--DNSYS~~RsK~L~  264 (271)
                      .+|.|.+.|  +|+|+|...+.|.
T Consensus        45 ~~~~~~V~FFg~~~~awv~~~~l~   68 (110)
T 2daq_A           45 DLGDFPVFFFGSHDYYWVHQGRVF   68 (110)
T ss_dssp             CSSCEEEEETTTTEEEEECSSSSE
T ss_pred             CCCcEEEEEecCCCEEEEcHHHCc
Confidence            467788888  8889999988774


Done!