RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6233
(271 letters)
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 218 bits (557), Expect = 1e-72
Identities = 81/136 (59%), Positives = 95/136 (69%)
Query: 135 IGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHVSETDDEMIS 194
+G GE VTVRVPTH G+ L+WEF TD YD+GFG+YFEW ++ VSVHVSE+ DE
Sbjct: 1 VGRGEVVTVRVPTHPEGTRLFWEFATDDYDIGFGVYFEWTPPTSDAVSVHVSESSDEEEE 60
Query: 195 DKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNS 254
++ E +K +R I P+ RRD H+EVYAGSH YPG GVYLLKFDNS
Sbjct: 61 EEAEEEEAETGDVEAGSKSQSRPLVDEIIPVYRRDSHEEVYAGSHQYPGRGVYLLKFDNS 120
Query: 255 YSLWRSKTLYYRVYYT 270
YSLWRSKTLYYRVYYT
Sbjct: 121 YSLWRSKTLYYRVYYT 136
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino
acids in length.
Length = 87
Score = 32.0 bits (73), Expect = 0.058
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 18 CILFKPYIDAHVAQKEEENRKA-REQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDA 76
CIL Y AQ+E +A EQ+ E+ V +V +V Q+ EE RRL +D
Sbjct: 16 CILAYLYWKLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQK--NEENTRRLSRDD 73
Query: 77 LNQQ 80
+++Q
Sbjct: 74 VDEQ 77
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 32.7 bits (75), Expect = 0.23
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 4 KDAMSNFIDLLDLKCILFKPYIDA--HVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQ 61
KD S D + KCI K I+ + N R+++E ++ +EQ+ G S
Sbjct: 390 KDPNSKLPDEFERKCIKRKELINTTEDILNNYIINEMWRKRLEEGRRLVAEQLKGVAESV 449
Query: 62 ETSIEEKKRRLIQDALNQQ 80
E +E ++ L ++
Sbjct: 450 EDIAKEINLEIVFHQLLEE 468
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 31.3 bits (71), Expect = 0.48
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 26 DAHVAQKEEENRKAREQIEREEK---------VKSEQVNGNEVSQ----ETSIEEKKRRL 72
A A+ + R+AR + ERE + + E KKR +
Sbjct: 151 QADAARARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAKKRAI 210
Query: 73 IQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQ 105
I AL + + A+ P N E + VQ
Sbjct: 211 IAAALERARKKKEELAAQGAGPKNTEGVSAAVQ 243
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 30.8 bits (70), Expect = 0.60
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 101 AVLVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETV 141
AV + G T +K E R DA+I +G G T+
Sbjct: 51 AVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTL 91
>gnl|CDD|219330 pfam07201, HrpJ, HrpJ-like domain. This family represents a
conserved region approximately 200 residues long within
a number of bacterial hypersensitivity response
secretion protein HrpJ and similar proteins. HrpJ forms
part of a type III secretion system through which, in
phytopathogenic bacterial species, virulence factors are
thought to be delivered to plant cells. This family also
includes the InvE invasion protein from Salmonella. This
protein is involved in host parasite interactions and
mutations in the InvE gene render Salmonella typhimurium
non-invasive. InvE S. typhimurium mutants fail to elicit
a rapid Ca2+ increase in cultured cells, an important
event in the infection procedure and internalisation of
S. typhimurium into epithelial cells. This family
includes bacterial SepL and SsaL proteins. SepL plays an
essential role in the infection process of
enterohemorrhagic Escherichia coli and is thought to be
responsible for the secretion of EspA, EspD, and EspB.
SsaL of Salmonella typhimurium is thought to be a
component of the type III secretion system.
Length = 161
Score = 30.0 bits (68), Expect = 0.67
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 37 RKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQ-QTYAQFRAYAEDQFPG 95
RK ++ + E + E + E + EEK R L Q + + Q AY E FP
Sbjct: 12 RKRSDRRKSESEKLEELSDLLERVLDLEAEEKLRELRQLLKSGRSSLPQLLAYLESLFP- 70
Query: 96 NPEQQAVLVQ 105
+P Q + ++
Sbjct: 71 DPSDQDLALR 80
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.9 bits (69), Expect = 1.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 31 QKEEENRKARE--QIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQD 75
++ EE +KA E + E EEK K+E++ E + EE K+ +D
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 30.5 bits (68), Expect = 1.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 25 IDAHVAQKEEENRKAREQI---EREEKVKSEQVNGNEVSQETSIEEKKRRLIQD 75
I A +K EE +K EQ+ E EEK K+E++ E + E+ ++ +D
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Score = 29.3 bits (65), Expect = 2.8
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 31 QKEEENRKAREQIER--EEKVKSEQVNGNEVSQETSIEEKKR 70
+ EE+ +KA E +++ EE K+E++ E ++ EE K+
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 29.3 bits (65), Expect = 2.8
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 31 QKEEENRKARE-QIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQ 80
+ EE+ +KA E + + EEK K + E + I ++K +I++ L+++
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
Score = 27.8 bits (61), Expect = 8.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 27 AHVAQKEEENRKAREQIEREEKVKSEQVNGNE----VSQETSIEEKKR 70
A A+K EE +KA E + EEK K++++ E ++ EE K+
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
Score = 27.8 bits (61), Expect = 8.8
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 25 IDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKK 69
I A A+K +E +KA E+ + +E K+E+ + +++ + E KK
Sbjct: 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 30.3 bits (69), Expect = 1.0
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 25 IDAHVAQ-KEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKR-----RLIQDALN 78
+D + + +EE+ +A+E+ E+++K++ E NE E EEK+R I +
Sbjct: 101 MDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQR 160
Query: 79 QQTYAQFRAYAEDQ 92
++ + ++
Sbjct: 161 EKA-EREEEREAER 173
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 30.5 bits (69), Expect = 1.1
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 68 KKRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIGPA 109
+ + +AL QQ Y QF ++ D F +QA+ +
Sbjct: 326 RTPPALIEALRQQNY-QFGLFSSDGFKSPLFRQALFSDLSLP 366
>gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE;
Provisional.
Length = 216
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 49 VKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQI 106
V SE GN Q+ ++E++RR+ +A+ Q Q R ++E + Q VQ+
Sbjct: 152 VPSEAAAGN--GQQQQVQEQRRRI--NAMLQDYELQRRLHSEQLQFEQAQTQQAAVQV 205
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 29.3 bits (66), Expect = 2.0
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 75 DALNQQTYAQFRAYAED---QFPGNPEQQAVLVQIGPANMWTL---TNIKSFKEHIRKEG 128
+Q A E Q PG+ E +L G A M + +++ +R G
Sbjct: 131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLL---GRAYMALGRASDALLAYRNALRLAG 187
Query: 129 GDAIIKIGHGETVT 142
+ I +G E +
Sbjct: 188 DNPEILLGLAEALY 201
>gnl|CDD|164963 PHA02568, J, baseplate assembly protein; Provisional.
Length = 300
Score = 28.9 bits (65), Expect = 3.0
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 11 IDLLDLKCIL--FKPYIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEK 68
+++LD + +L K + + + ++ A +E E K Q N E
Sbjct: 15 VEVLDFETLLAERKAALISLYPEDQQAAIAATLALESEPLTKLLQEN-------AYRELL 67
Query: 69 KRRLIQDALNQQTYAQFRAYAED 91
R+ + N+ A AYAE
Sbjct: 68 LRQRV----NEAARAVMLAYAEG 86
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 26.5 bits (59), Expect = 4.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 31 QKEEENRKAREQIEREEKVKSEQVN 55
+ EEE R+ E+ + E+ K + N
Sbjct: 30 KAEEEKREEEEEARKREERKEREKN 54
>gnl|CDD|221928 pfam13117, Cag12, Cag pathogenicity island protein Cag12. This is
a Proteobacterial family of Cag pathogenicity island
proteins.
Length = 112
Score = 26.9 bits (60), Expect = 4.6
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 49 VKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIGP 108
K + +NG + + +E+ K RLI + L +T+ A+ ++ +G
Sbjct: 41 PKDDFLNGQNWTYQIVLEKFKDRLIDNELIVKTFYL--AHNAKI----------IILVGE 88
Query: 109 ANMWTLTNIKSFKEHIRKEGGDAIIKI 135
+ I ++K +++K G +A+I++
Sbjct: 89 GD-----LILAYKNYLQKNGANAVIEL 110
>gnl|CDD|224654 COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production
and conversion].
Length = 355
Score = 28.2 bits (63), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 104 VQIGPANMWTLTNIKSFKEHIRK--EGGDAIIKIG 136
V +G M+ + + FKE +RK EG AII +G
Sbjct: 121 VPLGENGMYCIVGGEPFKEILRKAAEGASAIIAVG 155
>gnl|CDD|235973 PRK07226, PRK07226, fructose-bisphosphate aldolase; Provisional.
Length = 267
Score = 27.8 bits (63), Expect = 4.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 181 VSVHV---SETDDEMISD 195
VSVHV SET+ EM+ D
Sbjct: 110 VSVHVNVGSETEAEMLED 127
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 28.4 bits (63), Expect = 5.0
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 31 QKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFRAYAE 90
EE + +IE + E + S++E + L +T A F E
Sbjct: 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE-LMHQARTVLKARTEAHFNNNEE 769
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 27.7 bits (62), Expect = 5.6
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 17 KC-ILFKPYIDAHVAQKEEENRKAREQIEREEKVKS 51
+C + K +K E + RE R+EK+K+
Sbjct: 29 ECALALKREKAQEKKRKAEAQAERRELKARKEKLKT 64
>gnl|CDD|206350 pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family
includes the B. subtilis YgaB protein, which is
functionally uncharacterized. This family of proteins
is found in bacteria. Proteins in this family are
approximately 90 amino acids in length.
Length = 79
Score = 26.1 bits (58), Expect = 6.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 42 QIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFRAYAE 90
+IE+E ++ + QE S K+ + IQ+ +QT ++Y
Sbjct: 28 EIEKELLELEKKAELESIQQEISRMRKELKEIQELFEKQTEEVIQSYQS 76
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 27.9 bits (62), Expect = 7.0
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 35 ENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFRAYAEDQFP 94
E R+ARE++ERE++ + ++ + + EE ++ ++A+ ++ E Q
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQ--REAIEAAQRSRRLDAIEAQIK 61
Query: 95 GNPEQQAVLV 104
+ + Q L
Sbjct: 62 ADQQMQESLQ 71
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.0 bits (62), Expect = 7.2
Identities = 11/69 (15%), Positives = 20/69 (28%)
Query: 161 DHYDLGFGIYFEWNKSPTNQVSVHVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFS 220
D + S N+ + + + + RK K+ +
Sbjct: 3120 DDDLSEWEKVASSEVSLRNEDQLITKLINLWRKIELSKWGNLYRGEFRKGKKLNMKRLVP 3179
Query: 221 IISPIMRRD 229
I+ I RRD
Sbjct: 3180 YIASIFRRD 3188
>gnl|CDD|233933 TIGR02568, LcrE, type III secretion regulator YopN/LcrE/InvE/MxiC.
This protein is found in type III secretion operons and,
in Yersinia is localized to the cell surface and is
involved in the Low-Calicium Response (LCR), possibly by
sensing the calcium concentration. In Salmonella, the
gene is known as InvE and is believed to perform an
essential role in the secretion process and interacts
with the proteins SipBCD and SicA.//Altered name to
reflect regulatory role. Added GO and role IDs. Negative
regulation of type III secretion in Y pestis is mediated
in part by a multiprotein complex that has been proposed
to act as a physical impediment to type III secretion by
blocking the entrance to the secretion apparatus prior
to contact with mammalian cells. This complex is
composed of YopN, its heterodimeric secretion chaperone
SycN-YscB, and TyeA. PMID: 15701523[SS 6/3/05] [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 240
Score = 27.4 bits (61), Expect = 7.3
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 32 KEEENRKAREQIEREEKVKSEQV-NGNEVSQETSIEEKKRRLIQDALNQ-QTYAQFRAYA 89
+ E RKA + + + K+E + E + ++K + L + Q Q A A
Sbjct: 26 ELEAARKALQSRKVALEEKAELLSEYLERVLDADADQKLKELRAELSGQAAGLEQLLALA 85
Query: 90 EDQFPGNPEQQAVLVQ 105
FP P QA+ ++
Sbjct: 86 RGAFPD-PSDQALALR 100
>gnl|CDD|184904 PRK14940, PRK14940, DNA polymerase III subunit beta; Provisional.
Length = 367
Score = 27.5 bits (61), Expect = 8.6
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 62 ETSIEEKKRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVL 103
E +E +L+ N++ Q + + + FP PE + +
Sbjct: 85 EIELELCDEQLVITPPNKKISFQLKTISHESFPCFPENEGGV 126
>gnl|CDD|233670 TIGR01986, glut_syn_euk, glutathione synthetase, eukaryotic. This
model represents the eukaryotic glutathione synthetase,
which shows little resemblance to the analogous enzyme
of Gram-negative bacteria (TIGR01380). In the
Kinetoplastida, trypanothione replaces glutathione, but
can be made from glutathione; a sequence from Leishmania
is not included in the seed, is highly divergent, and
therefore scores between the trusted and noise cutoffs.
Length = 472
Score = 27.5 bits (61), Expect = 8.8
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 29 VAQKEEEN---RKAREQIEREE-KVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQ-TYA 83
+ Q+ E N ++ E E +KS ++ +V+ + SI++ +L Q+
Sbjct: 206 IVQRNERNIFDQRVLELELLERFNIKSIRLTFADVNDKLSIDDDTGKLFVRDTGQEIAVV 265
Query: 84 QFR-AYAEDQFPGNPEQQAVL 103
+R Y +P + +A L
Sbjct: 266 YYRTGYTPTDYPSQKDWEARL 286
>gnl|CDD|235145 PRK03636, PRK03636, hypothetical protein; Provisional.
Length = 179
Score = 26.9 bits (60), Expect = 9.5
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 34 EENRKAREQIEREEKVKS--EQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQFR 86
EEN + E EK + EQ V Q EK + I +AL+++ F
Sbjct: 115 EENPYLPKNEEVNEKDRLLAEQFLEQSVFQFR--REKLLKQIDEALDRRDKEAFH 167
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 10 FIDLLDLKCI-----LFKPYIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETS 64
+I L DL P + +++ + +KA ++++ K S + S +
Sbjct: 63 YIPLRDLSLHPKDESEAAPDVVPKSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRA 122
Query: 65 IEEKKRRL 72
IE+ +++L
Sbjct: 123 IEKLRKKL 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,530,209
Number of extensions: 1247080
Number of successful extensions: 1794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 88
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)