RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6233
(271 letters)
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 76.2 bits (187), Expect = 4e-16
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 35/142 (24%)
Query: 126 KEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHV 185
K+ + ++I G + V G L W+F +D D+GFGI+
Sbjct: 275 KQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFL-------------- 320
Query: 186 SETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEG 245
K E R G + + P R + H G+ G
Sbjct: 321 --------KTKMGERQRAGEM-------------TEVLPNQRYNSHLVPEDGTLTCSDPG 359
Query: 246 VYLLKFDNSYSLWRSKTLYYRV 267
+Y+L+FDN+YS +K + + V
Sbjct: 360 IYVLRFDNTYSFIHAKKVNFTV 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-04
Identities = 40/310 (12%), Positives = 88/310 (28%), Gaps = 105/310 (33%)
Query: 2 SSKDAMSNFID--LLDLKCILFKPYIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEV 59
KD +S F D + + C V ++ + + E+++ +
Sbjct: 17 QYKDILSVFEDAFVDNFDC--------KDV---QDMPKSI---------LSKEEID--HI 54
Query: 60 SQETSIEEKKRRLIQDALNQQ--TYAQF--------------RAYAEDQFPGNP-----E 98
RL L++Q +F E + P E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 99 QQAVLVQIGPANMWTLTNIKSFKEH--IRKEGGDAIIKIGHGETVTVRVPTH----EGGS 152
Q+ L ++ N+ + + +R+ A++++ + V + G +
Sbjct: 115 QRDRLYNDNQ--VFAKYNVSRLQPYLKLRQ----ALLELRPAKNVLI----DGVLGSGKT 164
Query: 153 CLYWEFCTDH---YDLGFGIYFEWNKSPTNQVSVHVSETDDEMIS---------DKDTES 200
+ + C + + F I+ W +++ + + ++ D + S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF--W-------LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 201 GRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEGVYLLKFDNSYSLW-- 258
S + I +RR + Y +C LL N +
Sbjct: 216 RSDHSSN-------IKLRIHSIQAELRRLLKSKPYE--NC-------LLVLLNVQNAKAW 259
Query: 259 -----RSKTL 263
K L
Sbjct: 260 NAFNLSCKIL 269
Score = 34.4 bits (78), Expect = 0.044
Identities = 35/273 (12%), Positives = 84/273 (30%), Gaps = 75/273 (27%)
Query: 8 SNFIDLLDLKC-ILFKPYIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIE 66
+ + +L C IL R ++V ++ ++ + S++
Sbjct: 256 AKAWNAFNLSCKILL---------------------TTRFKQV-TDFLSAATTT-HISLD 292
Query: 67 EKKRRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIGP-------------ANMWT 113
L D + + Y + + P + ++ P W
Sbjct: 293 HHSMTLTPD----EVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATW- 344
Query: 114 LTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEW 173
++K H+ + II+ ++ V P E+ +D + F
Sbjct: 345 ----DNWK-HVNCDKLTTIIES----SLNVLEPA---------EY-RKMFDR-LSV-FPP 383
Query: 174 N-KSPTNQVSV---HVSETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIM-RR 228
+ PT +S+ V ++D ++ +K + QP+++T + + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 229 DCHQEV---YAGSHCYPGEGVYLLKFDNSYSLW 258
H+ + Y + + + D Y
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYS 475
Score = 29.4 bits (65), Expect = 1.4
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 2 SSKDAMSNFIDLL-DLKCILFKPYIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVS 60
++ +A + ++ L LK +KPYI +N E++ ++
Sbjct: 512 TAWNASGSILNTLQQLK--FYKPYI--------CDNDPKYERLVNAILDFLPKIE----- 556
Query: 61 QETSIEEKKRRLIQDALNQQT 81
E I K L++ AL +
Sbjct: 557 -ENLICSKYTDLLRIALMAED 576
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 27 AHVAQKEEEN-RKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQ----- 80
A +E E+ RK RE E+ +++ ++++ E EK ++ +++ +Q
Sbjct: 77 ADRLTQEPESIRKWRE--EQRKRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 81 -TYAQFRAYAEDQFPGNPEQQAV 102
R A+ F P+ +
Sbjct: 133 KNKINNRI-ADKAFYQQPDADII 154
Score = 32.8 bits (74), Expect = 0.062
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 26 DAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQQTYAQF 85
+ + + ++ ++ EK K + N+ Q +E+ K N+ F
Sbjct: 95 RKRLQELDAASKVMEQEW--REKAKKDLEEWNQ-RQSEQVEKNKIN------NRIADKAF 145
Query: 86 RAYAED 91
+
Sbjct: 146 YQQPDA 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.54
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 20/47 (42%)
Query: 67 EKK--RRLIQDALNQQTYAQFRAYAEDQFPGNPEQQAVLVQIGPANM 111
EK+ ++L Q +L + YA+D P A+ ++ A M
Sbjct: 18 EKQALKKL-QASL--------KLYADDSAP------ALAIK---ATM 46
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase,
RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A
{Homo sapiens} SCOP: h.1.27.1
Length = 71
Score = 27.8 bits (61), Expect = 0.98
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 31 QKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQDALNQ 79
+ EE K ++ E + K E+++ + + E +I +R L A+N+
Sbjct: 14 ENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINT-ERTLKTQAVNK 61
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A
{Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 1.9
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 29 VAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRLIQ 74
+A +EE + +E +E+ E + E E + ++EK +Q
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKEL----EEKMVSLLQEKNDLQLQ 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.5 bits (64), Expect = 3.0
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 26 DAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQET------SIEEKKRRLIQ--DAL 77
V +EE K R+++ + + K + + ++E+ L + L
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042
Query: 78 NQQTYAQFRAYAEDQ 92
N++ + Q + E
Sbjct: 1043 NRRIHDQAKEITETM 1057
>2i3e_A G-rich; rich protein, CNP, 2',3'-cyclic-nucleotide 3'-
phosphodiesterase, nerve regeneration, hydrolase; NMR
{Carassius auratus}
Length = 222
Score = 27.4 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 96 NPEQQAVLVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKI 135
PE++ + + TL +++FKEHI + G+A ++
Sbjct: 15 LPEEEERIKCATMDFLKTLDTLEAFKEHISEFTGEAEKEV 54
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 6.8
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 24 YIDAHVAQKEEENRKAREQIEREEKVKSEQVNGNEVSQETSIEEKKRRL 72
+ V +K ++ + + +++R EQ+ N +Q +EEK+R+
Sbjct: 341 VFEMKVKEKVQKLKDSEAELQRRH----EQMKKNLEAQHKELEEKRRQF 385
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,084,317
Number of extensions: 232470
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 26
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.1 bits)