RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6233
         (271 letters)



>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 93.1 bits (231), Expect = 1e-24
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 35/142 (24%)

Query: 126 KEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYFEWNKSPTNQVSVHV 185
           K+  +  ++I  G +  V       G  L W+F +D  D+GFGI+ +             
Sbjct: 1   KQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQ------ 54

Query: 186 SETDDEMISDKDTESGRTGSQPRKTTKIVNRSPFSIISPIMRRDCHQEVYAGSHCYPGEG 245
                                             + + P  R + H     G+      G
Sbjct: 55  -----------------------------RAGEMTEVLPNQRYNSHLVPEDGTLTCSDPG 85

Query: 246 VYLLKFDNSYSLWRSKTLYYRV 267
           +Y+L+FDN+YS   +K + + V
Sbjct: 86  IYVLRFDNTYSFIHAKKVNFTV 107


>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
           and C-terminal domains {Streptococcus mutans [TaxId:
           1309]}
          Length = 317

 Score = 28.3 bits (62), Expect = 1.0
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 103 LVQIGPANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDH 162
             +I  A      N     E IR +G D +    +G+    +    E G   Y  F  D 
Sbjct: 64  RDEIVAAFRQVYPNFLGAYEKIRFKGIDNVSAHLYGQEAPEQFLILENG-ISYNVFLNDG 122

Query: 163 YDLGF 167
              G 
Sbjct: 123 LMTGI 127


>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 146

 Score = 26.8 bits (58), Expect = 2.1
 Identities = 8/71 (11%), Positives = 17/71 (23%), Gaps = 10/71 (14%)

Query: 112 WTLTNIKSFKEHI----------RKEGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTD 161
           W L  + +  +             K      I +         +     G  +      +
Sbjct: 72  WYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLN 131

Query: 162 HYDLGFGIYFE 172
           H   G   +F+
Sbjct: 132 HLKAGLQAFFQ 142


>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
           {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 46

 Score = 23.8 bits (52), Expect = 4.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 108 PANMWTLTNIKSFKEHIRKEGGDAIIKIGHGETVTVR 144
           P   +    I+S      KEGG   +K   GET+TV+
Sbjct: 10  PKQSFVKGTIQS------KEGGKVTVKTEGGETLTVK 40


>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation
          initiation factor IF-3 [Thermus aquaticus Y51MC23] 
          gi|218243207|gb|EED09738.1| translation initiation
          factor IF-3 [Thermus aquaticus Y51MC23]  E=2e-35
          s/c=1.74 id=82% cov=101%
          Length = 86

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 15 DLKCILFKPYIDAHVAQKEEENRKAREQIEREEKVK-SEQVNGNEVSQETSIEEKKRRLI 73
          ++K I F+  ID H    + +    +  +E   KVK +    G E+S     +    R+ 
Sbjct: 1  EVKSIKFRVKIDDH--DYQTKLNHIKRFLEEGHKVKVTIMFRGREMSYPELGQRLLERVA 58

Query: 74 QD 75
          +D
Sbjct: 59 KD 60


>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId:
           219653]}
          Length = 190

 Score = 25.2 bits (54), Expect = 7.5
 Identities = 11/42 (26%), Positives = 15/42 (35%)

Query: 130 DAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLGFGIYF 171
           D +   G G+ VT R  T   G          H + G  + F
Sbjct: 121 DVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVF 162


>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId:
           1172]}
          Length = 105

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 127 EGGDAIIKIGHGETVTVRVPTHEGGSCLYWEFCTDHYDLG 166
                ++  G   + T       G    Y  +C  H   G
Sbjct: 60  SHKQLLMSPGQSTSTTFPADAPAG---EYTFYCEPHRGAG 96


>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 25.2 bits (54), Expect = 9.3
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 5   DAMSNFIDLLDLKCILFKPYIDAHVAQKEEENRKAREQI---EREE 47
           +A+    + L    +     IDA++A + EE+ + R      E E 
Sbjct: 319 NALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFEL 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,015,114
Number of extensions: 46172
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 20
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)