BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6234
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 155/258 (60%), Positives = 188/258 (72%), Gaps = 10/258 (3%)
Query: 3 DCWENISVGMKVEVENTDTDTPSG-NHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSK 61
+ W+N+ VGMKVEVENTD D+ P SFWVA++ +I GYKAL+ YEGF DS
Sbjct: 32 EVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDS-H 90
Query: 62 DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K+
Sbjct: 91 DFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKIN 150
Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPV 181
+S++SRFR+ +NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IHPV
Sbjct: 151 DSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPV 210
Query: 182 GWARRTGHLISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGG 236
GWA GH ++AP Y +R G DDAT +LF ++ T S G+T
Sbjct: 211 GWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNF-TFDEYYS--DGKTNS 267
Query: 237 FVVGMKLESVDPLNLSDI 254
FV GMKLE+VDPLNLS I
Sbjct: 268 FVEGMKLEAVDPLNLSSI 285
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 89/236 (37%), Gaps = 43/236 (18%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYS 96
+A+VT+I G + LRY DS FW + S ++HPVGW T G L P
Sbjct: 176 LATVTKIVGDRLFLRYF----DSDDGFWCHEDSPIIHPVGWATTVGHNLAAP-------- 223
Query: 97 DWKDFLVKRLTGARTLPS---------------NFYHKVQESVKSRFRVDMNLEVVDKKR 141
+D+L + L G + F + + F M LE VD
Sbjct: 224 --QDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSFVEGMKLEAVDPLN 281
Query: 142 ISQVKVATIEKIVG---KRLQVHYYDDD----DGFCCHQDSPLIHPVGWARRTGHLISAP 194
+S + AT+ ++ +++ Y D D FC H+ SP I P G+ ++ P
Sbjct: 282 LSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNISVTPP 341
Query: 195 PLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLN 250
Y R D AG L GF VGM LE D ++
Sbjct: 342 NGYDSRTFTWEGYLSDT-------GAVAAGQHLFHDIIPDHGFEVGMSLECADLMD 390
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 49 LLRYEGFGEDSSKDFWVNLC----SSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVK 104
++R + + D+S W C S + P G+C+ + PP +++ W+ +L
Sbjct: 300 MIRIDSYQPDASGSDW--FCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLSD 357
Query: 105 RLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY-- 162
TGA + +H + F V M+LE D V VAT+ ++VG+ L+VH+
Sbjct: 358 --TGAVAAGQHLFHDIIPD--HGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDG 413
Query: 163 YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPP 195
+ D+ +S I+PVGW H + PP
Sbjct: 414 WTDEYDQWLDCESADIYPVGWCVLVNHKLEGPP 446
>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2
pdb|3CEY|B Chain B, Crystal Structure Of L3mbtl2
Length = 474
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 160/258 (62%), Gaps = 19/258 (7%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
+ D WE++ GMKVEV N+D PS +W+ASV Q AGY+ LLRYEGF D+S
Sbjct: 52 LYDQWEDVMKGMKVEVLNSDAVLPS-------RVYWIASVIQTAGYRVLLRYEGFENDAS 104
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
DFW NL + VHP+GWCA K L+PPRTI K++DWK +L+KRL G+RTLP +F+ K+
Sbjct: 105 HDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDWKGYLMKRLVGSRTLPVDFHIKM 164
Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYY--DDDDGFCCHQDSPLI 178
ES+K FR M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLI
Sbjct: 165 VESMKYPFRQGMRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLI 224
Query: 179 HPVGWARRTGHLISAPPLYTDRCAKGIRDRD--DATEDLFPLSVGTAGTKLSPGTGQTGG 236
HPVGW+RR GH I +D + DA LF K+ + G
Sbjct: 225 HPVGWSRRVGHGIKMSERRSDMAHHPTFRKIYCDAVPYLF--------KKVRAVYTEGGW 276
Query: 237 FVVGMKLESVDPLNLSDI 254
F GMKLE++DPLNL +I
Sbjct: 277 FEEGMKLEAIDPLNLGNI 294
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 37 VASVTQIA--GYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETK 94
VA+V ++ GY + G D F + S + P +C L PP+ E +
Sbjct: 296 VATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPPKGYEAQ 355
Query: 95 YSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIV 154
+W+++L K T ++ PS ++ + F+V M LE VD + VAT++++V
Sbjct: 356 TFNWENYLEK--TKSKAAPSRLFN--MDCPNHGFKVGMKLEAVDLMEPRLICVATVKRVV 411
Query: 155 GKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
+ L +H+ +D + +SP I+PVGW TG+ + P
Sbjct: 412 HRLLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPP 453
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 26/221 (11%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYS 96
+A V + G + L YE DS DFW ++ S ++HPVGW G + + + S
Sbjct: 191 MAVVDTVIGGRLRLLYED--GDSDDDFWCHMWSPLIHPVGWSRRVGHGI----KMSERRS 244
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSR---FRVDMNLEVVDKKRISQVKVATIEKI 153
D R +P F K +V + F M LE +D + + VAT+ K+
Sbjct: 245 DMAHHPTFRKIYCDAVPYLF--KKVRAVYTEGGWFEEGMKLEAIDPLNLGNICVATVCKV 302
Query: 154 VGKRLQVHYYDDD------DGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRD 207
+ + D D FC H S I P + ++ ++ P KG
Sbjct: 303 LLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPP--------KGYEA 354
Query: 208 RDDATEDLFPLSVGTAG-TKLSPGTGQTGGFVVGMKLESVD 247
+ E+ + A ++L GF VGMKLE+VD
Sbjct: 355 QTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVD 395
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
VGMK+E + P VA+V ++ + ++G+ DS D WV
Sbjct: 383 HGFKVGMKLEAVDLME----------PRLICVATVKRVVHRLLSIHFDGW--DSEYDQWV 430
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTIE 92
+ S ++PVGWC G L PP E
Sbjct: 431 DCESPDIYPVGWCELTGYQLQPPVAAE 457
>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex
pdb|3F70|B Chain B, Crystal Structure Of L3mbtl2-H4k20me1 Complex
Length = 456
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 160/258 (62%), Gaps = 19/258 (7%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
+ D WE++ GMKVEV N+D PS +W+ASV Q AGY+ LLRYEGF D+S
Sbjct: 34 LYDQWEDVMKGMKVEVLNSDAVLPS-------RVYWIASVIQTAGYRVLLRYEGFENDAS 86
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
DFW NL + VHP+GWCA K L+PPRTI K++DWK +L+KRL G+RTLP +F+ K+
Sbjct: 87 HDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDWKGYLMKRLVGSRTLPVDFHIKM 146
Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYY--DDDDGFCCHQDSPLI 178
ES+K FR M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLI
Sbjct: 147 VESMKYPFRQGMRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLI 206
Query: 179 HPVGWARRTGHLISAPPLYTDRCAKGIRDRD--DATEDLFPLSVGTAGTKLSPGTGQTGG 236
HPVGW+RR GH I +D + DA LF K+ + G
Sbjct: 207 HPVGWSRRVGHGIKMSERRSDMAHHPTFRKIYCDAVPYLF--------KKVRAVYTEGGW 258
Query: 237 FVVGMKLESVDPLNLSDI 254
F GMKLE++DPLNL +I
Sbjct: 259 FEEGMKLEAIDPLNLGNI 276
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 37 VASVTQIA--GYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETK 94
VA+V ++ GY + G D F + S + P +C L PP+ E +
Sbjct: 278 VATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPPKGYEAQ 337
Query: 95 YSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIV 154
+W+++L K T ++ PS ++ + F+V M LE VD + VAT++++V
Sbjct: 338 TFNWENYLEK--TKSKAAPSRLFN--MDCPNHGFKVGMKLEAVDLMEPRLICVATVKRVV 393
Query: 155 GKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
+ L +H+ +D + +SP I+PVGW TG+ + P
Sbjct: 394 HRLLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPP 435
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 26/221 (11%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYS 96
+A V + G + L YE DS DFW ++ S ++HPVGW G + + + S
Sbjct: 173 MAVVDTVIGGRLRLLYED--GDSDDDFWCHMWSPLIHPVGWSRRVGHGI----KMSERRS 226
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSR---FRVDMNLEVVDKKRISQVKVATIEKI 153
D R +P F K +V + F M LE +D + + VAT+ K+
Sbjct: 227 DMAHHPTFRKIYCDAVPYLF--KKVRAVYTEGGWFEEGMKLEAIDPLNLGNICVATVCKV 284
Query: 154 VGKRLQVHYYDDD------DGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRD 207
+ + D D FC H S I P + ++ ++ P KG
Sbjct: 285 LLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPP--------KGYEA 336
Query: 208 RDDATEDLFPLSVGTAG-TKLSPGTGQTGGFVVGMKLESVD 247
+ E+ + A ++L GF VGMKLE+VD
Sbjct: 337 QTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVD 377
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
VGMK+E + P VA+V ++ + ++G+ DS D WV
Sbjct: 365 HGFKVGMKLEAVDLME----------PRLICVATVKRVVHRLLSIHFDGW--DSEYDQWV 412
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTIE 92
+ S ++PVGWC G L PP E
Sbjct: 413 DCESPDIYPVGWCELTGYQLQPPVAAE 439
>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1
pdb|3FEO|B Chain B, The Crystal Structure Of Mbtd1
Length = 437
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 157/257 (61%), Gaps = 23/257 (8%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
M CW +IS ++VEV NTD P+ FW+A + ++AGY ALLRYEGF DS
Sbjct: 36 MGTCWGDISENVRVEVPNTDCSLPT-------KVFWIAGIVKLAGYNALLRYEGFENDSG 88
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
DFW N+C S +HPVGWCA GKPL+PPRTI+ KY++WK FLVKRLTGA+TLP +F KV
Sbjct: 89 LDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKV 148
Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDD---DGFCCHQDSPL 177
ES++ F+ M +EVVDK+ + + +VA +E ++G RL++ Y + + D F CH SPL
Sbjct: 149 SESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPL 208
Query: 178 IHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGF 237
IH +GW+R GH I + D D P A K +G+ F
Sbjct: 209 IHHIGWSRSIGHRFK---------RSDITKKQDGHFDTPPHLF--AKVKEVDQSGE--WF 255
Query: 238 VVGMKLESVDPLNLSDI 254
GMKLE++DPLNLS I
Sbjct: 256 KEGMKLEAIDPLNLSTI 272
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYS 96
VA V + G + L YE ED + DFW ++ S ++H +GW + G K S
Sbjct: 175 VAVVESVIGGRLRLVYEE-SEDRTDDFWCHMHSPLIHHIGWSRSIGHRF--------KRS 225
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSR--FRVDMNLEVVDKKRISQVKVATIEKIV 154
D + K+ G P + + KV+E +S F+ M LE +D +S + VATI K++
Sbjct: 226 D----ITKKQDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVL 281
Query: 155 GKRLQV------HYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDR 208
+ D D FC H SP I PVG+ ++ P YT K D
Sbjct: 282 ADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWF-DY 340
Query: 209 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVD 247
T + A KL GF VGMKLE+VD
Sbjct: 341 LRETGSI------AAPVKLFNKDVPNHGFRVGMKLEAVD 373
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 56 GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSN 115
D S F + S + PVG+C L PPR W D+L R TG+ P
Sbjct: 295 AADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYL--RETGSIAAPVK 352
Query: 116 FYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQ 173
++K + FRV M LE VD + VAT+ +I+ + L++H+ ++++
Sbjct: 353 LFNK--DVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDC 410
Query: 174 DSPLIHPVGWARRTGHLISAPPLYTDR 200
+SP ++PVGW + TG+ + P + R
Sbjct: 411 ESPDLYPVGWCQLTGYQLQPPASQSSR 437
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
VGMK+E + P VA+VT+I LLR G + D WV+ S
Sbjct: 365 VGMKLEAVDLME----------PRLICVATVTRII--HRLLRIHFDGWEEEYDQWVDCES 412
Query: 70 SMVHPVGWCATRGKPLIPPRTIETK 94
++PVGWC G L PP + ++
Sbjct: 413 PDLYPVGWCQLTGYQLQPPASQSSR 437
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-Ii) At 1.55 Angstrom
Length = 331
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 42 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNA 89
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 90 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 147
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 148 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 207
Query: 185 RRTGHLISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
++ G ++ P Y D C + + A+ +V T K+ P F+V M
Sbjct: 208 QKQGKPLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNM 257
Query: 242 KLESVDPLNLSDI 254
KLE+VD N + I
Sbjct: 258 KLEAVDRRNPALI 270
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 149 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 196
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRL---TGARTLPSNFYHKVQESV 124
S +HPVGWC +GKPL PP+ Y D +F ++ TGA +P+ + KV+
Sbjct: 197 SSPYIHPVGWCQKQGKPLTPPQ----DYPDPDNFCWEKYLEETGASAVPTWAF-KVRPP- 250
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVG 182
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP G
Sbjct: 251 -HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG 309
Query: 183 WARRTGHLISAP 194
W +TGH + P
Sbjct: 310 WCSKTGHPLQPP 321
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 12 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 69
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 70 YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 129
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD +N S
Sbjct: 130 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 164
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|B Chain B, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|C Chain C, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
Length = 345
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 53 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNA 100
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 101 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 158
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 159 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 218
Query: 185 RRTGHLISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
++ G ++ P Y D C + + A+ +V T K+ P F+V M
Sbjct: 219 QKQGKPLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNM 268
Query: 242 KLESVDPLNLSDI 254
KLE+VD N + I
Sbjct: 269 KLEAVDRRNPALI 281
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 160 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 207
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRL---TGARTLPSNFYHKVQESV 124
S +HPVGWC +GKPL PP+ Y D +F ++ TGA +P+ + KV+
Sbjct: 208 SSPYIHPVGWCQKQGKPLTPPQ----DYPDPDNFCWEKYLEETGASAVPTWAF-KVRP-- 260
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVG 182
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP G
Sbjct: 261 PHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG 320
Query: 183 WARRTGHLISAP 194
W +TGH + P
Sbjct: 321 WCSKTGHPLQPP 332
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
Query: 88 PRTIETKYS-DWKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQ 144
P T E K W+ +L ++ A T P + + Q K+ F++ M LE +D + S
Sbjct: 12 PATGEKKECWSWESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSM 69
Query: 145 VKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA 202
+ T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH + P Y +
Sbjct: 70 YFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEF 129
Query: 203 KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
+ P + + + P G F VGMKLE+VD +N S
Sbjct: 130 SWSQYLRSTRAQAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 175
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17- 25), Trigonal Form
pdb|3P8H|A Chain A, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|B Chain B, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|C Chain C, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
Length = 323
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 39 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNA 86
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 87 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 144
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 145 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 204
Query: 185 RRTGHLISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
++ G ++ P Y D C + + A+ +V T K+ P F+V M
Sbjct: 205 QKQGKPLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNM 254
Query: 242 KLESVDPLNLSDI 254
KLE+VD N + I
Sbjct: 255 KLEAVDRRNPALI 267
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 146 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 193
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRL---TGARTLPSNFYHKVQESV 124
S +HPVGWC +GKPL PP+ Y D +F ++ TGA +P+ + KV+
Sbjct: 194 SSPYIHPVGWCQKQGKPLTPPQ----DYPDPDNFCWEKYLEETGASAVPTWAF-KVRPP- 247
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVG 182
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP G
Sbjct: 248 -HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG 306
Query: 183 WARRTGHLISAP 194
W +TGH + P
Sbjct: 307 WCSKTGHPLQPP 318
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 9 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 66
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 67 YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 126
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD +N S
Sbjct: 127 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 161
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
In Complex With H1.5k27me2 At 1.66 Angstrom
pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
Bound To Dimethyl-lysine
Length = 345
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 47 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNA 94
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 95 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 152
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 153 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 212
Query: 185 RRTGHLISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
++ G ++ P Y D C + + A+ +V T K+ P F+V M
Sbjct: 213 QKQGKPLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNM 262
Query: 242 KLESVDPLNLSDI 254
KLE+VD N + I
Sbjct: 263 KLEAVDRRNPALI 275
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 154 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 201
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRL---TGARTLPSNFYHKVQESV 124
S +HPVGWC +GKPL PP+ Y D +F ++ TGA +P+ + KV+
Sbjct: 202 SSPYIHPVGWCQKQGKPLTPPQ----DYPDPDNFCWEKYLEETGASAVPT-WAFKVRP-- 254
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVG 182
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP G
Sbjct: 255 PHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG 314
Query: 183 WARRTGHLISAP 194
W +TGH + P
Sbjct: 315 WCSKTGHPLQPP 326
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 82 GKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDK 139
G P P + + W+ +L ++ A T P + + Q K+ F++ M LE +D
Sbjct: 1 GSPNSPATGEKKECWSWESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDP 58
Query: 140 KRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLY 197
+ S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH + P Y
Sbjct: 59 QHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGY 118
Query: 198 TDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
+ + P + + + P G F VGMKLE+VD +N S
Sbjct: 119 KEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 169
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|B Chain B, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|C Chain C, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJD|A Chain A, Crystal Structure Of L3mbtl1 Protein
pdb|2RJE|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|B Chain B, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJF|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|E Chain E, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|3UWN|A Chain A, The 3-Mbt Repeat Domain Of L3mbtl1 In Complex With A
Methyl-Lysine Mimic
Length = 331
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 39 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNA 86
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 87 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 144
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 145 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 204
Query: 185 RRTGHLISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
++ G ++ P Y D C + + A+ +V T K+ P F+V M
Sbjct: 205 QKQGKPLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNM 254
Query: 242 KLESVDPLNLSDI 254
KLE+VD N + I
Sbjct: 255 KLEAVDRRNPALI 267
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 146 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 193
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRL---TGARTLPSNFYHKVQESV 124
S +HPVGWC +GKPL PP+ Y D +F ++ TGA +P+ + KV+
Sbjct: 194 SSPYIHPVGWCQKQGKPLTPPQ----DYPDPDNFCWEKYLEETGASAVPTWAF-KVRPP- 247
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVG 182
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP G
Sbjct: 248 -HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAG 306
Query: 183 WARRTGHLISAP 194
W +TGH + P
Sbjct: 307 WCSKTGHPLQPP 318
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 9 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 66
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 67 YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 126
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD +N S
Sbjct: 127 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 161
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358q Point Mutation
Length = 319
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ + S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVDRMQPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTI-ETKY 95
VASVT + + L+ ++ + D + D+W + S +HPVGWC +GKPL PP+ +
Sbjct: 164 VASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN 221
Query: 96 SDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L + TGA +P+ + KV+ F V+M LE VD++ + ++VA++E +
Sbjct: 222 FXWEKYLEE--TGASAVPTWAF-KVRPP--HSFLVNMKLEAVDRRNPALIRVASVEDVED 276
Query: 156 KRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGHLISAP 194
R+++H+ G F D P IHP GW +TGH + P
Sbjct: 277 HRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 8 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 65
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 66 YRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 125
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD + S
Sbjct: 126 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMQPS 160
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 145 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 192
Query: 68 CSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKS 126
S +HPVGWC +GKPL PP+ + W+ +L + TGA +P+ + KV+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEE--TGASAVPTWAF-KVRPP--H 247
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWA 184
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW
Sbjct: 248 SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWC 307
Query: 185 RRTGHLISAP 194
+TGH + P
Sbjct: 308 SKTGHPLQPP 317
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 8 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 65
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 66 YRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 125
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD +N S
Sbjct: 126 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 160
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Dimethyl-Lysine And In Chimera With Histone
H3.3(28-34)
Length = 329
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 145 FQVGMKLEA--VDRMNPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 192
Query: 68 CSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKS 126
S +HPVGWC +GKPL PP+ + W+ +L + TGA +P+ + KV+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEE--TGASAVPTWAF-KVRP--PH 247
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWA 184
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW
Sbjct: 248 SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWC 307
Query: 185 RRTGHLISAP 194
+TGH + P
Sbjct: 308 SKTGHPLQPP 317
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 8 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 65
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 66 YRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 125
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+VD +N S
Sbjct: 126 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVDRMNPS 160
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358a Point Mutation
Length = 319
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVDRMAPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 20/190 (10%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VASVT + + L+ ++ + D + D+W +
Sbjct: 145 FQVGMKLEA--VDRMAPS--------LVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 192
Query: 68 CSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKS 126
S +HPVGWC +GKPL PP+ + W+ +L + TGA +P+ + KV+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEE--TGASAVPTWAF-KVRPP--H 247
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWA 184
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW
Sbjct: 248 SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWC 307
Query: 185 RRTGHLISAP 194
+TGH + P
Sbjct: 308 SKTGHPLQPP 317
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 24/246 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E G + + V +V ++ GY+ L ++G+ + DFWVN
Sbjct: 37 FKVGMKLE----------GVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSD--CYDFWVNA 84
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESV-KS 126
+ +HPVGWC G L PP+ + + +W+ +L + A+ P + + +V S
Sbjct: 85 DALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLFENQNITVIPS 142
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
FRV M LE VDKK S + VAT+ +V R VH+ +D+ + C SP IHPVGW
Sbjct: 143 GFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWC 202
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
+ + PP Y + K D E+ L K+ P GF MKLE
Sbjct: 203 KEHRRTLITPPGYPN--VKHF-SWDKYLEETNSLPAPARAFKVKP----PHGFQKKMKLE 255
Query: 245 SVDPLN 250
VD N
Sbjct: 256 VVDKRN 261
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
VGMK+E D PS VA+VT + + L+ ++ + D S D+W S
Sbjct: 146 VGMKLEA--VDKKNPS--------FICVATVTDMVDNRFLVHFDNW--DESYDYWCEASS 193
Query: 70 SMVHPVGWCATRGKPLI-PPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRF 128
+HPVGWC + LI PP K+ W +L + T + P+ + KV+ F
Sbjct: 194 PHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEE--TNSLPAPARAF-KVKPP--HGF 248
Query: 129 RVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARR 186
+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW +
Sbjct: 249 QKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSK 308
Query: 187 TGHLISAP 194
TGH + P
Sbjct: 309 TGHPLQPP 316
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 98 WKDFLVKRLTGARTLPSNFY--HKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W +L + A +P+ + H+ K+ F+V M LE VD + S V T+ ++ G
Sbjct: 7 WASYLEEE--KAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCG 64
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
R+++H+ Y D F + D+ IHPVGW +TGH + P KG ++ + +
Sbjct: 65 YRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPP--------KGYKEEEFNWQ 116
Query: 214 DLFPLSVGTAGTK-LSPGTGQT---GGFVVGMKLESVDPLNLSDI 254
A K L T GF VGMKLE+VD N S I
Sbjct: 117 TYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFI 161
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 24/246 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E G + + V +V ++ GY+ L ++G+ + DFWVN
Sbjct: 37 FKVGMKLE----------GVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSD--CYDFWVNA 84
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESV-KS 126
+ +HPVGWC G L PP+ + + +W+ +L + A+ P + + +V S
Sbjct: 85 DALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLFENQNITVIPS 142
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
FRV M LE VDKK S + VAT+ +V R VH+ +D+ + C SP IHPVGW
Sbjct: 143 GFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWC 202
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
+ + PP Y + K D E+ L K+ P GF MKLE
Sbjct: 203 KEHRRTLITPPGYPN--VKHF-SWDKYLEETNSLPAPARAFKVKP----PHGFQKKMKLE 255
Query: 245 SVDPLN 250
VD N
Sbjct: 256 VVDKRN 261
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E D PS VA+VT + + L+ ++ + D S D+W
Sbjct: 144 FRVGMKLEA--VDKKNPS--------FICVATVTDMVDNRFLVHFDNW--DESYDYWCEA 191
Query: 68 CSSMVHPVGWCATRGKPLI-PPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKS 126
S +HPVGWC + LI PP K+ W +L + T + P+ + KV+
Sbjct: 192 SSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEE--TNSLPAPARAF-KVKPP--H 246
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW
Sbjct: 247 GFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWC 306
Query: 185 RRTGHLISAP 194
+TGH + P
Sbjct: 307 SKTGHPLQPP 316
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 98 WKDFLVKRLTGARTLPSNFY--HKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W +L + A +P+ + H+ K+ F+V M LE VD + S V T+ ++ G
Sbjct: 7 WASYLEEE--KAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCG 64
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
R+++H+ Y D F + D+ IHPVGW +TGH + P KG ++ + +
Sbjct: 65 YRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPP--------KGYKEEEFNWQ 116
Query: 214 DLFPLSVGTAGTK-LSPGTGQT---GGFVVGMKLESVDPLNLSDI 254
A K L T GF VGMKLE+VD N S I
Sbjct: 117 TYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFI 161
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355n Point Mutation
Length = 319
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE V++ S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVNRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E N P VASVT + + L+ ++ + D + D+W +
Sbjct: 145 FQVGMKLEAVNRMN----------PSLVCVASVTDVVDSRFLVHFDNW--DDTYDYWCDP 192
Query: 68 CSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKS 126
S +HPVGWC +GKPL PP+ + W+ +L + TGA +P+ + KV+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEE--TGASAVPTWAF-KVRPP--H 247
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWA 184
F V+M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW
Sbjct: 248 SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWC 307
Query: 185 RRTGHLISAP 194
+TGH + P
Sbjct: 308 SKTGHPLQPP 317
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 8 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 65
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 66 YRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 125
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+V+ +N S
Sbjct: 126 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVNRMNPS 160
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355a Point Mutation
Length = 319
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+GMK+E G +P +++ +V ++ GY+ L ++G+ E DFWVN
Sbjct: 38 FKLGMKLE----------GIDPQHPSMYFILTVAEVCGYRLRLHFDGYSE--XHDFWVNA 85
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S +HP GW G L PP+ + + W +L R T A+ P + + S
Sbjct: 86 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPL 143
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F+V M LE V + S V VA++ +V R VH+ +DD + C SP IHPVGW
Sbjct: 144 GFQVGMKLEAVARMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWC 203
Query: 185 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 244
++ G ++ P Y D + E+ +V T K+ P F+V MKLE
Sbjct: 204 QKQGKPLTPPQDYPD---PDNFXWEKYLEETGASAVPTWAFKVRP----PHSFLVNMKLE 256
Query: 245 SVDPLNLSDI 254
+VD N + I
Sbjct: 257 AVDRRNPALI 266
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTI-ETKY 95
VASVT + + L+ ++ + D + D+W + S +HPVGWC +GKPL PP+ +
Sbjct: 164 VASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN 221
Query: 96 SDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L + TGA +P+ + KV+ F V+M LE VD++ + ++VA++E +
Sbjct: 222 FXWEKYLEE--TGASAVPTWAF-KVRPP--HSFLVNMKLEAVDRRNPALIRVASVEDVED 276
Query: 156 KRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGHLISAP 194
R+++H+ G F D P IHP GW +TGH + P
Sbjct: 277 HRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ M LE +D + S + T+ ++ G
Sbjct: 8 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCG 65
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 66 YRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 125
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VGMKLE+V +N S
Sbjct: 126 QAAPKHLFVSQSHSPPPLG----FQVGMKLEAVARMNPS 160
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OZ3|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
Length = 331
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 20/231 (8%)
Query: 30 NYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPR 89
+P +++ +V ++ GY+ L ++G+ E DFWVN S +HP GW G L PP+
Sbjct: 54 QHPSXYFILTVAEVCGYRLRLHFDGYSE--CHDFWVNANSPDIHPAGWFEKTGHKLQPPK 111
Query: 90 TIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR-FRVDMNLEVVDKKRISQVKVA 148
+ + W +L R T A+ P + + S F+V LE VD+ S V VA
Sbjct: 112 GYKEEEFSWSQYL--RSTRAQAAPKHLFVSQSHSPPPLGFQVGXKLEAVDRXNPSLVCVA 169
Query: 149 TIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDR---CAK 203
++ +V R VH+ +DD + C SP IHPVGW ++ G ++ P Y D C +
Sbjct: 170 SVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWE 229
Query: 204 GIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDI 254
+ A+ +V T K+ P F+V KLE+VD N + I
Sbjct: 230 KYLEETGAS------AVPTWAFKVRP----PHSFLVNXKLEAVDRRNPALI 270
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYS 96
VASVT + + L+ ++ + D + D+W + S +HPVGWC +GKPL PP+ Y
Sbjct: 168 VASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQ----DYP 221
Query: 97 DWKDFLVKRL---TGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKI 153
D +F ++ TGA +P+ + KV+ F V+ LE VD++ + ++VA++E +
Sbjct: 222 DPDNFCWEKYLEETGASAVPTWAF-KVRPP--HSFLVNXKLEAVDRRNPALIRVASVEDV 278
Query: 154 VGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGHLISAP 194
R+++H+ G F D P IHP GW +TGH + P
Sbjct: 279 EDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 321
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESV--KSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W+ +L ++ A T P + + Q K+ F++ LE +D + S + T+ ++ G
Sbjct: 12 WESYLEEQ--KAITAPVSLFQDSQAVTHNKNGFKLGXKLEGIDPQHPSXYFILTVAEVCG 69
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATE 213
RL++H+ Y + F + +SP IHP GW +TGH + P Y + +
Sbjct: 70 YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRA 129
Query: 214 DLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
P + + + P G F VG KLE+VD N S
Sbjct: 130 QAAPKHLFVSQSHSPPPLG----FQVGXKLEAVDRXNPS 164
>pdb|2BIV|A Chain A, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|B Chain B, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|C Chain C, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
Length = 243
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
+ VGMK+E + T S +A+V I G + LR +G D+ DFW
Sbjct: 62 DFKVGMKLEARDPRNAT----------SVCIATVIGITGARLRLRLDG--SDNRNDFWRL 109
Query: 67 LCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK-VQESVK 125
+ S + PVG C G L PP + S W FL+K L G+ + + K +
Sbjct: 110 VDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKEPPKPPL 169
Query: 126 SRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGW 183
+ F+V M LE +DKK + ATI + G + + + + + C DS I P GW
Sbjct: 170 NNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGW 229
Query: 184 ARRTGHLISAP 194
R TG ++ P
Sbjct: 230 CRLTGDVLQPP 240
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR 157
W+++L + TG+ + PS + + Q + F+V M LE D + + V +AT+ I G R
Sbjct: 35 WEEYL--KETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGAR 92
Query: 158 LQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA-------KGIRDR 208
L++ D+ + F DSP I PVG + G L+ P Y + K +
Sbjct: 93 LRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGS 152
Query: 209 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLN 250
+ A+ LF K P F VGMKLE++D N
Sbjct: 153 EMASATLF---------KKEPPKPPLNNFKVGMKLEAIDKKN 185
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
N VGMK+E + P A++ + G + + ++G+ + D+W
Sbjct: 171 NFKVGMKLEAIDKKN----------PYLICPATIGDVKGDEVHITFDGWS--GAFDYWCK 218
Query: 67 LCSSMVHPVGWCATRGKPLIPPRT 90
S + P GWC G L PP T
Sbjct: 219 YDSRDIFPAGWCRLTGDVLQPPGT 242
>pdb|1OI1|A Chain A, Crystal Structure Of The Mbt Domains Of Human Scml2
pdb|2VYT|A Chain A, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine.
pdb|2VYT|B Chain B, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine
Length = 221
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
+ VGMK+E + T S +A+V I G + LR +G D+ DFW
Sbjct: 40 DFKVGMKLEARDPRNAT----------SVCIATVIGITGARLRLRLDG--SDNRNDFWRL 87
Query: 67 LCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK-VQESVK 125
+ S + PVG C G L PP + S W FL++ L G+ + + K +
Sbjct: 88 VDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGSEMASATLFKKEPPKPPL 147
Query: 126 SRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGW 183
+ F+V M LE +DKK + ATI + G + + + + + C DS I P GW
Sbjct: 148 NNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGW 207
Query: 184 ARRTGHLISAP 194
R TG ++ P
Sbjct: 208 CRLTGDVLQPP 218
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR 157
W+++L + TG+ + PS + + Q + F+V M LE D + + V +AT+ I G R
Sbjct: 13 WEEYL--KETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGAR 70
Query: 158 LQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA-------KGIRDR 208
L++ D+ + F DSP I PVG + G L+ P Y + + +
Sbjct: 71 LRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGS 130
Query: 209 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLN 250
+ A+ LF K P F VGMKLE++D N
Sbjct: 131 EMASATLF---------KKEPPKPPLNNFKVGMKLEAIDKKN 163
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
N VGMK+E + P A++ + G + + ++G+ + D+W
Sbjct: 149 NFKVGMKLEAIDKKN----------PYLICPATIGDVKGDEVHITFDGWS--GAFDYWCK 196
Query: 67 LCSSMVHPVGWCATRGKPLIPPRT 90
S + P GWC G L PP T
Sbjct: 197 YDSRDIFPAGWCRLTGDVLQPPGT 220
>pdb|4EDU|A Chain A, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 215
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
+ VGMK+E + T S +A+V I G + LR +G D+ DFW
Sbjct: 34 DFKVGMKLEARDPRNAT----------SVCIATVIGITGARLRLRLDG--SDNRNDFWRL 81
Query: 67 LCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK-VQESVK 125
+ S + PVG C G L PP + S W FL++ L G+ + + K +
Sbjct: 82 VDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGSEMASATLFKKEPPKPPL 141
Query: 126 SRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGW 183
+ F+V M LE +DKK + ATI + G + + + + + C DS I P GW
Sbjct: 142 NNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGW 201
Query: 184 ARRTGHLISAP 194
R TG ++ P
Sbjct: 202 CRLTGDVLQPP 212
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR 157
W+++L + TG+ + PS + + Q + F+V M LE D + + V +AT+ I G R
Sbjct: 7 WEEYL--KETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGAR 64
Query: 158 LQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA-------KGIRDR 208
L++ D+ + F DSP I PVG + G L+ P Y + + +
Sbjct: 65 LRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGS 124
Query: 209 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLN 250
+ A+ LF K P F VGMKLE++D N
Sbjct: 125 EMASATLF---------KKEPPKPPLNNFKVGMKLEAIDKKN 157
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
N VGMK+E + P A++ + G + + ++G+ + D+W
Sbjct: 143 NFKVGMKLEAIDKKN----------PYLICPATIGDVKGDEVHITFDGWS--GAFDYWCK 190
Query: 67 LCSSMVHPVGWCATRGKPLIPPRT 90
S + P GWC G L PP T
Sbjct: 191 YDSRDIFPAGWCRLTGDVLQPPGT 214
>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1
Length = 212
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 15/190 (7%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+ MK+E ++ T S +A+V + G + LR +G D+ DFW +
Sbjct: 32 FKISMKLEAQDPRNTT----------STCIATVVGLTGARLRLRLDG--SDNKNDFWRLV 79
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSR 127
S+ + P+G C G L PP S W FL+K L GA P +HK S
Sbjct: 80 DSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHN 139
Query: 128 -FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWA 184
F++ M LE VD+K + ATI ++ G + V + + + C DS I PVGW
Sbjct: 140 FFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWC 199
Query: 185 RRTGHLISAP 194
TG + P
Sbjct: 200 SLTGDNLQPP 209
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 98 WKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR 157
W +L + T + P + + + + F++ M LE D + + +AT+ + G R
Sbjct: 4 WDKYL--KETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGAR 61
Query: 158 LQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP----------PLYTDRCAKGI 205
L++ D+ + F DS I P+G + G ++ P P++ + G
Sbjct: 62 LRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNG- 120
Query: 206 RDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVD 247
++ P+ + P + F +GMKLE+VD
Sbjct: 121 -------AEMAPIRI----FHKEPPSPSHNFFKMGMKLEAVD 151
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 38 ASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRT 90
A++ ++ G + L+ ++G+ + D+W S + PVGWC+ G L PP T
Sbjct: 161 ATIGEVRGSEVLVTFDGW--RGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGT 211
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm)
pdb|2R58|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Di-Methyl Lysine
pdb|2R5A|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Methyl Lysine
pdb|2R5M|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Peptide R-(Me)k-S
Length = 265
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
+ +GMK+E + T S +A+V + G + LR +G DS DFW
Sbjct: 33 NDFKIGMKLEALDPRNVT----------STCIATVVGVLGSRLRLRLDG--SDSQNDFWR 80
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVK 125
+ S+ +H +G C G L PP S W +L K L A P + +
Sbjct: 81 LVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPE 140
Query: 126 SR-FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVG 182
F+V LE VDKK + AT++ I ++ V + + + C+ S I P G
Sbjct: 141 ENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAG 200
Query: 183 WARRTGHLISAP 194
W R+ H + P
Sbjct: 201 WCARSCHPMQPP 212
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
DW +L + TG+ P+ + + Q + F++ M LE +D + ++ +AT+ ++G
Sbjct: 6 DWDAYLEE--TGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGS 63
Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPL 196
RL++ D + F DS IH +G + G ++ PPL
Sbjct: 64 RLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQ-PPL 104
>pdb|1WJS|A Chain A, Solution Structure Of The First Mbt Domain From Human
Kiaa1798 Protein
Length = 127
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVG 182
K+ F+V M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVG
Sbjct: 11 KNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVG 70
Query: 183 WARRTGHLISAPPLYTDR 200
W +TGH + P Y +
Sbjct: 71 WCEKTGHKLHPPKGYKEE 88
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
VGMK+E G + + V +V ++ GY+ L ++G+ + DFWVN
Sbjct: 14 FKVGMKLE----------GVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSD--CYDFWVNA 61
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFY 117
+ +HPVGWC G L PP+ + + +W+ +L + A+ P + +
Sbjct: 62 DALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLF 109
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 224 GTKLSPGTGQTGGFVVGMKLESVDPLNLS 252
G+ S G GF VGMKLE VDP + S
Sbjct: 1 GSSGSSGPYNKNGFKVGMKLEGVDPEHQS 29
>pdb|1WJQ|A Chain A, Solution Structure Of The Third Mbt Domain From Human
Kiaa1798 Protein
Length = 107
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 128 FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWAR 185
F+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW
Sbjct: 14 FQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCS 73
Query: 186 RTGHLISAP 194
+TGH + P
Sbjct: 74 KTGHPLQPP 82
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 37 VASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPP 88
VA+V ++ + ++G+ ++ D+W++ S +HPVGWC+ G PL PP
Sbjct: 33 VATVADTDDHRVKVHFDGW--NNCYDYWIDADSPDIHPVGWCSKTGHPLQPP 82
>pdb|1WJR|A Chain A, Solution Structure Of The 2nd Mbt Domain From Human
Kiaa1617 Protein
Length = 127
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
I+VG +E++++ P +W+ SV + G + LRY G + S D W+
Sbjct: 12 ITVGSLIELQDSQN----------PFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFY 61
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIE--TKYSDWKDFLVKRLTGARTLP 113
+ PVGWC + PP I S+WK L K L A P
Sbjct: 62 LDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFP 109
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 56 GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDW--KDFLVKRLTGARTLP 113
E + + +W+ + ++ + R +P P ++ ++ +FL+ RLTG L
Sbjct: 27 AEMTPRQWWLAVSEALAEML-----RAQPFAKP-VANQRHVNYISMEFLIGRLTGNNLLN 80
Query: 114 SNFYHKVQESVKSRFRVDMNL 134
+Y VQ+S+K+ D+NL
Sbjct: 81 LGWYQDVQDSLKA---YDINL 98
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 56 GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDW--KDFLVKRLTGARTLP 113
E + + +W+ + ++ + R +P P ++ ++ +FL+ RLTG L
Sbjct: 28 AEMTPRQWWLAVSEALAEML-----RAQPFAKP-VANQRHVNYISMEFLIGRLTGNNLLN 81
Query: 114 SNFYHKVQESVKSRFRVDMNL 134
+Y VQ+S+K+ D+NL
Sbjct: 82 LGWYQDVQDSLKA---YDINL 99
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 56 GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDW--KDFLVKRLTGARTLP 113
E + + +W+ + ++ + R +P P ++ ++ +FL+ RLTG L
Sbjct: 27 AEMTPRQWWLAVSEALAEML-----RAQPFAKP-VANQRHVNYISMEFLIGRLTGNNLLN 80
Query: 114 SNFYHKVQESVKSRFRVDMNL 134
+Y VQ+S+K+ D+NL
Sbjct: 81 LGWYQDVQDSLKA---YDINL 98
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 56 GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDW--KDFLVKRLTGARTLP 113
E + + +W+ + ++ + R +P P ++ ++ +FL+ RLTG L
Sbjct: 27 AEMTPRQWWLAVSEALAEML-----RAQPFAKP-VANQRHVNYISMEFLIGRLTGNNLLN 80
Query: 114 SNFYHKVQESVKSRFRVDMNL 134
+Y VQ+S+K+ D+NL
Sbjct: 81 LGWYQDVQDSLKA---YDINL 98
>pdb|4GWP|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 295
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 219 SVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDI 254
++GT G + GTG+TG +G+ E +D L ++ I
Sbjct: 253 TMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTSI 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,609,025
Number of Sequences: 62578
Number of extensions: 365727
Number of successful extensions: 971
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 95
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)