RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6234
(260 letters)
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and vertebrate
SCML2. Present in Drosophila Scm, l(3)mbt, and
vertebrate SCML2. These proteins are involved in
transcriptional regulation.
Length = 96
Score = 114 bits (288), Expect = 1e-32
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 99 KDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRL 158
+D+L TGAR P + + +S + F+V M LE VD + S + VAT+ ++ G RL
Sbjct: 1 EDYL--EETGARAAPVELFKQPVDSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRL 58
Query: 159 QVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
+H+ +DD F CH DSP I PVGW + GH + P
Sbjct: 59 LLHFDGWDDKYDFWCHADSPDIFPVGWCEKNGHPLQPP 96
Score = 84.2 bits (209), Expect = 5e-21
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
VGMK+E + N P VA+V ++ GY+ LL ++G+ D DFW
Sbjct: 25 PNGFKVGMKLEAVD---------PRN-PSLICVATVVEVKGYRLLLHFDGW--DDKYDFW 72
Query: 65 VNLCSSMVHPVGWCATRGKPLIPP 88
+ S + PVGWC G PL PP
Sbjct: 73 CHADSPDIFPVGWCEKNGHPLQPP 96
Score = 36.1 bits (84), Expect = 0.002
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 229 PGTGQTGGFVVGMKLESVDPLNLSDIW 255
P GF VGMKLE+VDP N S I
Sbjct: 20 PVDSPPNGFKVGMKLEAVDPRNPSLIC 46
>gnl|CDD|202414 pfam02820, MBT, mbt repeat. The function of this repeat is
unknown, but is found in a number of nuclear proteins
such as drosophila sex comb on midleg protein. The
repeat is found in up to four copies. The repeat
contains a completely conserved glutamate at its amino
terminus that may be important for function.
Length = 73
Score = 91.6 bits (228), Expect = 4e-24
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 132 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 189
M LE VD + S + AT+ + G RL++ + +D D F CH DSP IHPVGW + GH
Sbjct: 1 MKLEAVDPRNPSLICPATVVTVRGYRLRLRFDGWDSDYDFWCHVDSPDIHPVGWCEKNGH 60
Query: 190 LISAPPLYTDR 200
++ PP Y +
Sbjct: 61 VLQPPPGYRSK 71
Score = 60.4 bits (147), Expect = 3e-12
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 32 PDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTI 91
P A+V + GY+ LR++G+ D DFW ++ S +HPVGWC G L PP
Sbjct: 11 PSLICPATVVTVRGYRLRLRFDGWDSDY--DFWCHVDSPDIHPVGWCEKNGHVLQPPPGY 68
Query: 92 ETKYS 96
+K
Sbjct: 69 RSKTF 73
Score = 26.5 bits (59), Expect = 3.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 241 MKLESVDPLNLSDIW 255
MKLE+VDP N S I
Sbjct: 1 MKLEAVDPRNPSLIC 15
>gnl|CDD|179654 PRK03818, PRK03818, putative transporter; Validated.
Length = 552
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 129 RVDMNLEVVDKKRISQVKVATIEKIVGKRL 158
VD +L S+ V T EK++GK+L
Sbjct: 277 EVDTSLSTRGTDLRSERVVVTNEKVLGKKL 306
>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 307
Score = 29.0 bits (65), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 101 FLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEV 136
F+V G T N H VQ++VK +F +++N EV
Sbjct: 262 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 297
>gnl|CDD|226133 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 28.9 bits (65), Expect = 2.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 211 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSD 253
ATE L +V +L+ G G +VG+ S +PLNL+D
Sbjct: 54 ATEGLNKPAVHLV--QLAFGEG-----LVGLVGRSAEPLNLAD 89
>gnl|CDD|226661 COG4198, COG4198, Uncharacterized conserved protein [Function
unknown].
Length = 405
Score = 28.6 bits (64), Expect = 3.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 117 YHKVQESVKSRFRVDMNLEVVDKKRISQVKVATI 150
Y++V VKS+F D +++ K + QV
Sbjct: 252 YNRV---VKSQFTPDELVKLSKKFEVEQVYKEPA 282
>gnl|CDD|179908 PRK04980, PRK04980, hypothetical protein; Provisional.
Length = 102
Score = 27.1 bits (61), Expect = 3.8
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 202 AKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQQH 260
K I RD++ P G L GT + + +++ SV P+ ++ ++H
Sbjct: 19 RKTITIRDESESHFKP------GDVLRVGTFEDDRYFCTIEVLSVSPVTFDEL--NEKH 69
>gnl|CDD|224232 COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of
pyruvate formate lyase activating proteins [General
function prediction only].
Length = 335
Score = 28.5 bits (64), Expect = 3.9
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 109 ARTLPSNFYHKVQ-----ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK------R 157
AR + F +++ + + R + ++ D + +KV +I+ K R
Sbjct: 24 ARRIEVEFDEEMELEELWRIHERKLRKLASGDIKDSPSLLDLKVEIAYRILEKCTLCERR 83
Query: 158 LQVHYYDDDDGFCCHQDSPLIH 179
V+ + + GFC ++ P +
Sbjct: 84 CGVNRLEGEKGFCRVKEKPYVA 105
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 27.9 bits (63), Expect = 5.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 168 GFCCHQDSP---LIHPVGW----ARRTGHLISAPPLYTDRCAKGIRDRDDATEDL 215
GF SP L P+ W +R + AP D C + +RD A DL
Sbjct: 215 GFPVVLMSPLAFLRRPLRWLEAISRYRATVSGAPNFAYDLCVRRVRDEQLAGLDL 269
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 73 HPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLP-SNFYHKVQESVKSR 127
+ +G A R + +I PR +Y V R AR + N K++E V+
Sbjct: 68 YLIGILALRDRKVIIPRHTYGEY-----ERVARFFAARIIKGPNDPEKLEELVERN 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,215,104
Number of extensions: 1215147
Number of successful extensions: 912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 18
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)