RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6234
(260 letters)
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin
regulator, DNA-BIN metal-binding, nucleus, repressor,
transcription; HET: MLZ SUC; 2.80A {Drosophila
melanogaster}
Length = 447
Score = 264 bits (675), Expect = 9e-87
Identities = 153/261 (58%), Positives = 185/261 (70%), Gaps = 10/261 (3%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDN-YPDSFWVASVTQIAGYKALLRYEGFGEDS 59
+ W+N+ VGMKVEVENTD D+ P SFWVA++ +I GYKAL+ YEGF DS
Sbjct: 30 GCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDS 89
Query: 60 SKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK 119
DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K
Sbjct: 90 -HDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNK 148
Query: 120 VQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIH 179
+ +S++SRFR+ +NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IH
Sbjct: 149 INDSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIH 208
Query: 180 PVGWARRTGHLISAPPLYTDRCAKGIRDR-----DDATEDLFPLSVGTAGTKLSPGTGQT 234
PVGWA GH ++AP Y +R G DDAT +LF + G+T
Sbjct: 209 PVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKM---NFTFDEYYSDGKT 265
Query: 235 GGFVVGMKLESVDPLNLSDIW 255
FV GMKLE+VDPLNLS I
Sbjct: 266 NSFVEGMKLEAVDPLNLSSIC 286
Score = 164 bits (417), Expect = 3e-48
Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 33/260 (12%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
+G+ +E + + +A+VT+I G + LRY S FW +
Sbjct: 157 FRLGLNLECVD----------KDRISQVRLATVTKIVGDRLFLRYFD----SDDGFWCHE 202
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGART-----LPSNFYHKVQE 122
S ++HPVGW T G L P+ + ++ +++ T + F +
Sbjct: 203 DSPIIHPVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSD 262
Query: 123 SVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG-KRLQVHY------YDDDDGFCCHQDS 175
+ F M LE VD +S + AT+ ++ + + D FC H+ S
Sbjct: 263 GKTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKS 322
Query: 176 PLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTG 235
P I P G+ ++ P Y R L AG L
Sbjct: 323 PCIFPAGFCSVNNISVTPPNGYDSRTF-------TWEGYLSDTGAVAAGQHLFHDIIPDH 375
Query: 236 GFVVGMKLESVDPLNLSDIW 255
GF VGM LE D ++ +
Sbjct: 376 GFEVGMSLECADLMDPRLVC 395
Score = 154 bits (389), Expect = 3e-44
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAG-YKALLRYEGFGEDSSK-- 61
+ GMK+E + S A+V + ++R + + D+S
Sbjct: 265 TNSFVEGMKLEAVD----------PLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSD 314
Query: 62 DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
F + S + P G+C+ + PP +++ W+ +L TGA + +H
Sbjct: 315 WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLSD--TGAVAAGQHLFH--D 370
Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIH 179
F V M+LE D V VAT+ ++VG+ L+VH+ + D+ +S I+
Sbjct: 371 IIPDHGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADIY 430
Query: 180 PVGWARRTGHLISAPP 195
PVGW H + PP
Sbjct: 431 PVGWCVLVNHKLEGPP 446
Score = 96.7 bits (240), Expect = 4e-23
Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 34/181 (18%)
Query: 97 DWKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQVK--------- 146
DW L K P F H V V M +EV + S
Sbjct: 7 DWLPRLSK--ENFNAAPVTCFPHAPGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTS 64
Query: 147 --VATIEKIVGKRLQVHYY---DDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRC 201
VATI +I G + + Y D F + + +H VGW G + P +
Sbjct: 65 FWVATILEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKY 124
Query: 202 -------AKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDI 254
+ + + F +G+ LE VD +S +
Sbjct: 125 KDWKDFLVGRLSGARTLPSNFY----------NKINDSLQSRFRLGLNLECVDKDRISQV 174
Query: 255 W 255
Sbjct: 175 R 175
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
regulator, metal-binding, nucleus, transcript
transcription regulation, zinc-finger; HET: MLZ; 2.10A
{Homo sapiens} PDB: 3dbb_A* 3cey_A
Length = 456
Score = 254 bits (649), Expect = 1e-82
Identities = 119/259 (45%), Positives = 158/259 (61%), Gaps = 19/259 (7%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
+ D WE++ GMKVEV N+D +W+ASV Q AGY+ LLRYEGF D+S
Sbjct: 34 LYDQWEDVMKGMKVEVLNSD-------AVLPSRVYWIASVIQTAGYRVLLRYEGFENDAS 86
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
DFW NL + VHP+GWCA K L+PPRTI K++DWK +L+KRL G+RTLP +F+ K+
Sbjct: 87 HDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDWKGYLMKRLVGSRTLPVDFHIKM 146
Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLI 178
ES+K FR M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLI
Sbjct: 147 VESMKYPFRQGMRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLI 206
Query: 179 HPVGWARRTGHLISAPPLYTDRCAK--GIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGG 236
HPVGW+RR GH I +D + DA LF K+ + G
Sbjct: 207 HPVGWSRRVGHGIKMSERRSDMAHHPTFRKIYCDAVPYLFK--------KVRAVYTEGGW 258
Query: 237 FVVGMKLESVDPLNLSDIW 255
F GMKLE++DPLNL +I
Sbjct: 259 FEEGMKLEAIDPLNLGNIC 277
Score = 162 bits (410), Expect = 3e-47
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 18/204 (8%)
Query: 4 CWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIA--GYKALLRYEGFGEDSSK 61
GMK+E + + VA+V ++ GY + G D
Sbjct: 255 EGGWFEEGMKLEAID----------PLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLD 304
Query: 62 DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
F + S + P +C L PP+ E + +W+++L K T ++ PS ++
Sbjct: 305 WFCYHASSHAIFPATFCQKNDIELTPPKGYEAQTFNWENYLEK--TKSKAAPSRLFN--M 360
Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIH 179
+ F+V M LE VD + VAT++++V + L +H+ +D + +SP I+
Sbjct: 361 DCPNHGFKVGMKLEAVDLMEPRLICVATVKRVVHRLLSIHFDGWDSEYDQWVDCESPDIY 420
Query: 180 PVGWARRTGHLISAPPLYTDRCAK 203
PVGW TG+ + P
Sbjct: 421 PVGWCELTGYQLQPPVAAEPATPL 444
Score = 158 bits (400), Expect = 8e-46
Identities = 59/255 (23%), Positives = 91/255 (35%), Gaps = 30/255 (11%)
Query: 8 ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
GM++EV + +A V + G + L YE DS DFW ++
Sbjct: 154 FRQGMRLEVV----------DKSQVSRTRMAVVDTVIGGRLRLLYEDG--DSDDDFWCHM 201
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYH-KVQESVKS 126
S ++HPVGW G + R +P F + +
Sbjct: 202 WSPLIHPVGWSRRVGHGIKMSERR--SDMAHHPTF--RKIYCDAVPYLFKKVRAVYTEGG 257
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIV-GKRLQVHYY-----DDDDGFCCHQDSPLIHP 180
F M LE +D + + VAT+ K++ L + D D FC H S I P
Sbjct: 258 WFEEGMKLEAIDPLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFP 317
Query: 181 VGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVG 240
+ ++ ++ P Y + + L A ++L GF VG
Sbjct: 318 ATFCQKNDIELTPPKGYEAQTF-------NWENYLEKTKSKAAPSRLFNMDCPNHGFKVG 370
Query: 241 MKLESVDPLNLSDIW 255
MKLE+VD + I
Sbjct: 371 MKLEAVDLMEPRLIC 385
Score = 95.9 bits (238), Expect = 8e-23
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 97 DWKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQVK---VATIEK 152
DW FL + P + F H M +EV++ + + +A++ +
Sbjct: 11 DWGKFLKD--HSYKAAPVSCFKHVPLYDQWEDVMKGMKVEVLNSDAVLPSRVYWIASVIQ 68
Query: 153 IVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDR 208
G R+ + Y +++D F C+ + +HP+GW ++ P + +
Sbjct: 69 TAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFT---DWK 125
Query: 209 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
+ L + F GM+LE VD +S
Sbjct: 126 GYLMKRLVGSRTLPVDFHIKMVESMKYPFRQGMRLEVVDKSQVSRTR 172
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics,
structural genomics consortium, metal-binding, nucleus,
zinc-finger; 2.50A {Homo sapiens}
Length = 437
Score = 252 bits (645), Expect = 3e-82
Identities = 116/258 (44%), Positives = 153/258 (59%), Gaps = 23/258 (8%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
M CW +IS ++VEV NTD P FW+A + ++AGY ALLRYEGF DS
Sbjct: 36 MGTCWGDISENVRVEVPNTDCSLP-------TKVFWIAGIVKLAGYNALLRYEGFENDSG 88
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
DFW N+C S +HPVGWCA GKPL+PPRTI+ KY++WK FLVKRLTGA+TLP +F KV
Sbjct: 89 LDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKV 148
Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG---FCCHQDSPL 177
ES++ F+ M +EVVDK+ + + +VA +E ++G RL++ Y + +D F CH SPL
Sbjct: 149 SESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPL 208
Query: 178 IHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGF 237
IH +GW+R GH + + D LF K+ F
Sbjct: 209 IHHIGWSRSIGHRFKRSDITKKQ-----DGHFDTPPHLF--------AKVKEVDQSGEWF 255
Query: 238 VVGMKLESVDPLNLSDIW 255
GMKLE++DPLNLS I
Sbjct: 256 KEGMKLEAIDPLNLSTIC 273
Score = 154 bits (389), Expect = 3e-44
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 4 CWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKAL-LRYEGF-GEDSSK 61
E GMK+E + + VA++ ++ L + +G D S
Sbjct: 251 SGEWFKEGMKLEAID----------PLNLSTICVATIRKVLADGFLMIGIDGSEAADGSD 300
Query: 62 DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
F + S + PVG+C L PPR W D+L + TG+ P ++K
Sbjct: 301 WFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRE--TGSIAAPVKLFNKDV 358
Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIH 179
+ FRV M LE VD + VAT+ +I+ + L++H+ ++++ +SP ++
Sbjct: 359 PN--HGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLY 416
Query: 180 PVGWARRTGHLISAPPLYTDR 200
PVGW + TG+ + P + R
Sbjct: 417 PVGWCQLTGYQLQPPASQSSR 437
Score = 143 bits (361), Expect = 3e-40
Identities = 66/257 (25%), Positives = 94/257 (36%), Gaps = 36/257 (14%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
M+VEV + VA V + G + L YE ED + DFW
Sbjct: 154 YPFKPCMRVEVV----------DKRHLCRTRVAVVESVIGGRLRLVYEE-SEDRTDDFWC 202
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYH-KVQESV 124
++ S ++H +GW + G + + + T P F K +
Sbjct: 203 HMHSPLIHHIGWSRSIGHRFKRSDITKKQDGHFD-----------TPPHLFAKVKEVDQS 251
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR-LQVHYY-----DDDDGFCCHQDSPLI 178
F+ M LE +D +S + VATI K++ L + D D FC H SP I
Sbjct: 252 GEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSI 311
Query: 179 HPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFV 238
PVG+ ++ P YT + L A KL GF
Sbjct: 312 FPVGFCEINMIELTPPRGYTKLPF-------KWFDYLRETGSIAAPVKLFNKDVPNHGFR 364
Query: 239 VGMKLESVDPLNLSDIW 255
VGMKLE+VD + I
Sbjct: 365 VGMKLEAVDLMEPRLIC 381
Score = 93.2 bits (231), Expect = 6e-22
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 13/177 (7%)
Query: 87 PPRTIETKYSDWKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQV 145
+ + W +++ P F H + ++ +EV +
Sbjct: 3 TKAAVSMEGFSWGNYINS--NSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPT 60
Query: 146 K---VATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWARRTGHLISAPPLYT 198
K +A I K+ G + Y +++D G F C+ IHPVGW +G + P
Sbjct: 61 KVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQ 120
Query: 199 DRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
+ + + L F M++E VD +L
Sbjct: 121 HKYT---NWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTR 174
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
modification, transcription repression, MBT repeat
structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
4fl6_A* 1wjs_A
Length = 324
Score = 189 bits (481), Expect = 4e-59
Identities = 75/264 (28%), Positives = 110/264 (41%), Gaps = 36/264 (13%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
VGMK+E + + + V +V ++ GY+ L ++G
Sbjct: 30 FPYNKNGFKVGMKLEGVDP----------EHQSVYCVLTVAEVCGYRIKLHFDG--YSDC 77
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSN-FYHK 119
DFWVN + +HPVGWC G L PP+ + + +W+ +L + A+ P + F ++
Sbjct: 78 YDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLFENQ 135
Query: 120 VQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPL 177
+ S FRV M LE VDKK S + VAT+ +V R VH+ +D+ + C SP
Sbjct: 136 NITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPH 195
Query: 178 IHPVGWARRTGHLISAPPLYTDRCAKGIRD------RDDATEDLFPLSVGTAGTKLSPGT 231
IHPVGW + + PP Y + A F +
Sbjct: 196 IHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPH--------- 246
Query: 232 GQTGGFVVGMKLESVDPLNLSDIW 255
GF MKLE VD N I
Sbjct: 247 ----GFQKKMKLEVVDKRNPMFIR 266
Score = 152 bits (385), Expect = 1e-44
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 20/204 (9%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
++ VGMK+E P VA+VT + + L+ ++ D S
Sbjct: 137 ITVIPSGFRVGMKLEAV----------DKKNPSFICVATVTDMVDNRFLVHFDN--WDES 184
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHK 119
D+W S +HPVGWC + LI P K+ W +L + T + P+ +
Sbjct: 185 YDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEE--TNSLPAPARAFKV 242
Query: 120 VQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPL 177
F+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP
Sbjct: 243 KPPH---GFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPD 299
Query: 178 IHPVGWARRTGHLISAPPLYTDRC 201
IHPVGW +TGH + P +
Sbjct: 300 IHPVGWCSKTGHPLQPPLSPLELM 323
Score = 141 bits (357), Expect = 1e-40
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQ--ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIV 154
W +L + A +P+ + + Q K+ F+V M LE VD + S V T+ ++
Sbjct: 6 CWASYLEE--EKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVC 63
Query: 155 GKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIR-----D 207
G R+++H+ Y D F + D+ IHPVGW +TGH + P Y +
Sbjct: 64 GYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCK 123
Query: 208 RDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
A + LF + T GF VGMKLE+VD N S I
Sbjct: 124 AQAAPKSLF---------ENQNITVIPSGFRVGMKLEAVDKKNPSFIC 162
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 184 bits (467), Expect = 9e-58
Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 19/241 (7%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
+ +GMK+E + P S +A+V + G + LR +G DS DFW
Sbjct: 32 NNDFKIGMKLEALD-----PRN-----VTSTCIATVVGVLGSRLRLRLDG--SDSQNDFW 79
Query: 65 VNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ-ES 123
+ S+ +H +G C G L PP S W +L K L A P + E
Sbjct: 80 RLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSWPGYLCKILNNAMVAPEEIFQPEPPEP 139
Query: 124 VKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPV 181
++ F+V LE VDKK + AT++ I ++ V + + + C+ S I P
Sbjct: 140 EENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPA 199
Query: 182 GWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
GW R+ H + P + + + R + P + T F
Sbjct: 200 GWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVV----AESEAMVPASPATAHFHPNC 255
Query: 242 K 242
K
Sbjct: 256 K 256
Score = 125 bits (314), Expect = 7e-35
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
DW +L + TG+ P+ + + Q + F++ M LE +D + ++ +AT+ ++G
Sbjct: 6 DWDAYLEE--TGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGS 63
Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATED 214
RL++ D + F DS IH +G + G ++ P + + +
Sbjct: 64 RLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSWPGYLCKILNN 123
Query: 215 LFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
+ P + F VG KLE+VD N I
Sbjct: 124 AMVAPEEIFQPE--PPEPEENLFKVGQKLEAVDKKNPQLIC 162
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant
brain tumor, transcription factor; 1.7A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Length = 243
Score = 178 bits (452), Expect = 1e-55
Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 15/193 (7%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
+ VGMK+E + S +A+V I G + LR +G D+ DFW
Sbjct: 60 VNDFKVGMKLEARD----------PRNATSVCIATVIGITGARLRLRLDG--SDNRNDFW 107
Query: 65 VNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSN-FYHKVQES 123
+ S + PVG C G L PP + S W FL+K L G+ + F + +
Sbjct: 108 RLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKEPPKP 167
Query: 124 VKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPV 181
+ F+V M LE +DKK + ATI + G + + + + + C DS I P
Sbjct: 168 PLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPA 227
Query: 182 GWARRTGHLISAP 194
GW R TG ++ P
Sbjct: 228 GWCRLTGDVLQPP 240
Score = 144 bits (364), Expect = 1e-42
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 9/194 (4%)
Query: 64 WVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQES 123
VN S V P +++ W+++L + TG+ + PS + + Q
Sbjct: 4 TVNEDSMDVKKENQ---EKTPQSSTSSVQRDDFHWEEYL--KETGSISAPSECFRQSQIP 58
Query: 124 VKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPV 181
+ F+V M LE D + + V +AT+ I G RL++ D+ + F DSP I PV
Sbjct: 59 PVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPV 118
Query: 182 GWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
G + G L+ P Y + S + P F VGM
Sbjct: 119 GTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKE--PPKPPLNNFKVGM 176
Query: 242 KLESVDPLNLSDIW 255
KLE++D N I
Sbjct: 177 KLEAIDKKNPYLIC 190
Score = 70.8 bits (173), Expect = 8e-15
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
N VGMK+E P A++ + G + + ++G+ + D+W
Sbjct: 169 LNNFKVGMKLEAI----------DKKNPYLICPATIGDVKGDEVHITFDGW--SGAFDYW 216
Query: 65 VNLCSSMVHPVGWCATRGKPLIPPRT 90
S + P GWC G L PP T
Sbjct: 217 CKYDSRDIFPAGWCRLTGDVLQPPGT 242
Score = 43.0 bits (101), Expect = 3e-05
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 26/97 (26%)
Query: 168 GFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRD---------RDDATEDLFPL 218
G ++DS + + P T + A + F
Sbjct: 2 GQTVNEDSMDVKKENQEKT-------PQSSTSSVQRDDFHWEEYLKETGSISAPSECFR- 53
Query: 219 SVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
F VGMKLE+ DP N + +
Sbjct: 54 ---------QSQIPPVNDFKVGMKLEARDPRNATSVC 81
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller,
transcription repressor, three malignant brain TU
repeats, transcription; HET: MES; 1.55A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A*
3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A*
3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A*
2ri2_A* 2ri5_A*
Length = 331
Score = 180 bits (457), Expect = 2e-55
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 24/254 (9%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
+GMK+E + +P +++ +V ++ GY+ L ++G+ DFW
Sbjct: 39 KNGFKLGMKLEGIDP----------QHPSMYFILTVAEVCGYRLRLHFDGY--SECHDFW 86
Query: 65 VNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSN-FYHKVQES 123
VN S +HP GW G L PP+ + + W +L T A+ P + F +
Sbjct: 87 VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRS--TRAQAAPKHLFVSQSHSP 144
Query: 124 VKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPV 181
F+V M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPV
Sbjct: 145 PPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPV 204
Query: 182 GWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 241
GW ++ G ++ P Y D + E + +A + F+V M
Sbjct: 205 GWCQKQGKPLTPPQDYPDP-------DNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNM 257
Query: 242 KLESVDPLNLSDIW 255
KLE+VD N + I
Sbjct: 258 KLEAVDRRNPALIR 271
Score = 148 bits (375), Expect = 3e-43
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 87 PPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ--ESVKSRFRVDMNLEVVDKKRISQ 144
P + + W+ +L + A T P + + Q K+ F++ M LE +D + S
Sbjct: 1 PATGEKKECWSWESYLEE--QKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSM 58
Query: 145 VKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA 202
+ T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH + P Y +
Sbjct: 59 YFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEF 118
Query: 203 KGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
+ A + LF + GF VGMKLE+VD +N S +
Sbjct: 119 SWSQYLRSTRAQAAPKHLF---------VSQSHSPPPLGFQVGMKLEAVDRMNPSLVC 167
Score = 145 bits (367), Expect = 4e-42
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
S VGMK+E P VASVT + + L+ ++ D +
Sbjct: 142 HSPPPLGFQVGMKLEAV----------DRMNPSLVCVASVTDVVDSRFLVHFDN--WDDT 189
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRTI-ETKYSDWKDFLVKRLTGARTLPSNFYHK 119
D+W + S +HPVGWC +GKPL PP+ + W+ +L + TGA +P+ +
Sbjct: 190 YDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEE--TGASAVPTWAFKV 247
Query: 120 VQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPL 177
F V+M LE VD++ + ++VA++E + R+++H+ + F D P
Sbjct: 248 RPPH---SFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPD 304
Query: 178 IHPVGWARRTGHLISAPPLYTDR 200
IHP GW +TGH + P +
Sbjct: 305 IHPAGWCSKTGHPLQPPLGPREP 327
Score = 68.5 bits (167), Expect = 1e-13
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
V MK+E + P VASV + ++ + ++G+ DFW++
Sbjct: 255 VNMKLEAVDR----------RNPALIRVASVEDVEDHRIKIHFDGW--SHGYDFWIDADH 302
Query: 70 SMVHPVGWCATRGKPLIPPRTIETKYS 96
+HP GWC+ G PL PP S
Sbjct: 303 PDIHPAGWCSKTGHPLQPPLGPREPSS 329
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.34.9.3
Length = 127
Score = 126 bits (317), Expect = 5e-37
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
+ I+VG +E++++ P +W+ SV + G + LRY G + S D W+
Sbjct: 10 DLITVGSLIELQDSQ----------NPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWL 59
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTIET--KYSDWKDFLVKRLTGARTLP 113
+ PVGWC + PP I S+WK L K L A P
Sbjct: 60 FYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFP 109
Score = 76.1 bits (187), Expect = 1e-17
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVG 182
V +E+ D + Q + ++ + VG RL++ Y +D + + PVG
Sbjct: 11 LITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVG 70
Query: 183 WARRTGHLISAPPLYTDR 200
W + + + P
Sbjct: 71 WCQENKYRMDPPSEIYPL 88
Score = 32.2 bits (73), Expect = 0.063
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 236 GFVVGMKLESVDPLNLSDIW 255
VG +E D N W
Sbjct: 11 LITVGSLIELQDSQNPFQYW 30
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.34.9.3
Length = 107
Score = 88.3 bits (219), Expect = 1e-22
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVG 182
F+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVG
Sbjct: 11 PHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVG 70
Query: 183 WARRTGHLISAPPLYTDRCAK 203
W +TGH + P +
Sbjct: 71 WCSKTGHPLQPPLSPLELMEA 91
Score = 74.9 bits (184), Expect = 2e-17
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVN 66
MK+EV + P VA+V ++ + ++G+ ++ D+W++
Sbjct: 13 GFQKKMKLEVVDK----------RNPMFIRVATVADTDDHRVKVHFDGW--NNCYDYWID 60
Query: 67 LCSSMVHPVGWCATRGKPLIPPRTIE 92
S +HPVGWC+ G PL PP +
Sbjct: 61 ADSPDIHPVGWCSKTGHPLQPPLSPL 86
Score = 33.6 bits (77), Expect = 0.013
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 236 GFVVGMKLESVDPLNLSDIW 255
GF MKLE VD N I
Sbjct: 13 GFQKKMKLEVVDKRNPMFIR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 78/248 (31%)
Query: 11 GMKVE--VENTDTDTPSGNH-DNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNL 67
G+ + +EN TP ++ + P S + V Q+A Y + GF + + L
Sbjct: 212 GLNILEWLENPSN-TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYL 267
Query: 68 CSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFL---VKRLT-----GAR--------T 111
+ H + L+ I W+ F K +T G R +
Sbjct: 268 KGATGH--------SQGLVTAVAIAET-DSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 112 LPSNFYHKVQESVKSRFRVD--MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGF 169
LP + +++S+++ V M L + + + ++ V K
Sbjct: 319 LPPSI---LEDSLENNEGVPSPM-LSISNLTQ------EQVQDYVNK------------T 356
Query: 170 CCHQDSPLIHPVGWARRTGH---LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTK 226
H P V + G ++S PP + L+ L++ K
Sbjct: 357 NSH--LPAGKQVEISLVNGAKNLVVSGPP-----------------QSLYGLNLTLRKAK 397
Query: 227 LSPGTGQT 234
G Q+
Sbjct: 398 APSGLDQS 405
Score = 36.6 bits (84), Expect = 0.007
Identities = 46/281 (16%), Positives = 73/281 (25%), Gaps = 128/281 (45%)
Query: 1 MSDCWEN--------ISV-GM---KVE--VENTDTDTPSGNHD-----NYPDSFWVASVT 41
+ D EN +S+ + +V+ V T++ P+G N + V
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL----V- 378
Query: 42 QIAGY-KALLRYEGF-----------GEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPR 89
++G ++L G G D S+ IP
Sbjct: 379 -VSGPPQSL---YGLNLTLRKAKAPSGLDQSR------------------------IP-- 408
Query: 90 TIETKYSDWK-----DFL-VKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRIS 143
+S+ K FL V P +H S L
Sbjct: 409 -----FSERKLKFSNRFLPV-------ASP---FH-------SHL-----LVPASDLINK 441
Query: 144 QVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDS------PLI--HPVGWARRTG----H 189
+ + K +Q+ YD DG S I PV W T H
Sbjct: 442 DLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 190 LISAPPLYTDRCAK---------GIR-----DRDDATEDLF 216
++ P G+R D +D +
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2jtf_A
Length = 88
Score = 37.3 bits (86), Expect = 5e-04
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 127 RFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGF--CCHQDSPLIHPVGW 183
F + LE +D + ++ VH+ + + DS + P+
Sbjct: 19 TFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 77
Score = 35.4 bits (81), Expect = 0.002
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 7 NISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQI--AGYKALLRYEGFGEDSSKDFW 64
+G ++E + ++ + + +I K L+ +E + D W
Sbjct: 19 TFEIGARLEALDYL------------QKWYPSRIEKIDYEEGKMLVHFERW--SHRYDEW 64
Query: 65 VNLCSSMVHPVGWCATRGK 83
+ S+ + P+ A R +
Sbjct: 65 IYWDSNRLRPLERPALRKE 83
Score = 25.8 bits (56), Expect = 5.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 219 SVGTAGTKLSPGTGQTGGFVVGMKLESVDPLN 250
S G++G P F +G +LE++D L
Sbjct: 2 SSGSSGMSKKPPNRPGITFEIGARLEALDYLQ 33
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo
sapiens} PDB: 3q1j_A
Length = 69
Score = 36.4 bits (84), Expect = 7e-04
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 128 FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGF--CCHQDSPLIHPV 181
F V LE D+ + ++ +H+ + + DSP + P+
Sbjct: 13 FEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPL 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.15
Identities = 42/304 (13%), Positives = 73/304 (24%), Gaps = 104/304 (34%)
Query: 13 KVEVENTDTDTPSGNHDNY----------PDSFWVASVTQIAGYKAL------LRYE--- 53
++ E PS Y F +V+++ Y L LR
Sbjct: 97 PIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 54 ------GFGE-----DSSKD-----------FWVNLCSSMVHPVGWCATRGKPLIPPRTI 91
G G+ D FW+N + C + L +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--------LKNCNSPETVLEM---L 202
Query: 92 ETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMN-------LEVVDKKRISQ 144
+ R + + S+++ R + L V+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRRLLKSKPYENCLLVLL-----N 252
Query: 145 VKVATIEKIVGKRLQVHYYDDDDGFCCH-----QDSPLIHPVGWARRTGH--LISAPPLY 197
V+ A + ++ C + + + A T H L
Sbjct: 253 VQNAKA---------WNAFN----LSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTL 298
Query: 198 TDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV-DPLNLSDIWK 256
T D + L + L T + + ES+ D L D WK
Sbjct: 299 TP----------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 257 RQQH 260
Sbjct: 349 HVNC 352
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 0.96
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 51 RYEGFGEDSSKDF-----------WVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWK 99
E FGE S + + N GW ++ K + + ++ KY
Sbjct: 839 EMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYE--- 895
Query: 100 DFLVKRLTGARTL-PSNF 116
+++ +G R + P F
Sbjct: 896 TSILEH-SGIRLIEPELF 912
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 230 GTGQTGGFVVGMKLESVDP 248
GTG+T F + M L VD
Sbjct: 168 GTGKTAAFALTM-LSRVDA 185
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 27.1 bits (60), Expect = 7.8
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 188 GHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTG 235
G L P Y + + + D F + G+ P G
Sbjct: 87 GRLAFPPLDYEQSIPEAVMADYRSQRDPFART----GSPALPDGLNIG 130
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 26.6 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 230 GTGQTGGFVVGMKLESVDP 248
GTG+T FV+ M L V+P
Sbjct: 141 GTGKTAAFVLAM-LSQVEP 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,105,610
Number of extensions: 238665
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 50
Length of query: 260
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 168
Effective length of database: 4,133,061
Effective search space: 694354248
Effective search space used: 694354248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)