RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6234
(260 letters)
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 114 bits (286), Expect = 4e-33
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 98 WKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
W FL++ L G+ + F + + + F+V M LE +DKK + ATI + G
Sbjct: 2 WPMFLLETLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGD 61
Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
+ + + + + C DS I P GW R TG ++ P
Sbjct: 62 EVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPP 101
Score = 88.4 bits (219), Expect = 5e-23
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
N VGMK+E + P A++ + G + + ++G+ +
Sbjct: 26 PKPPLNNFKVGMKLEAIDK----------KNPYLICPATIGDVKGDEVHITFDGW--SGA 73
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPRT 90
D+W S + P GWC G L PP T
Sbjct: 74 FDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 103
Score = 34.8 bits (80), Expect = 0.002
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 211 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
A+ LF K P F VGMKLE++D N I
Sbjct: 16 ASATLF---------KKEPPKPPLNNFKVGMKLEAIDKKNPYLIC 51
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 107 bits (269), Expect = 1e-30
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
W+++L + TG+ + PS + + Q + F+V M LE D + + V +AT+ I G
Sbjct: 2 HWEEYL--KETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGA 59
Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLY 197
RL++ D+ + F DSP I PVG + G L+ P Y
Sbjct: 60 RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGY 102
Score = 86.8 bits (215), Expect = 2e-22
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 5 WENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFW 64
+ VGMK+E + S +A+V I G + LR +G D+ DFW
Sbjct: 28 VNDFKVGMKLEARD----------PRNATSVCIATVIGITGARLRLRLDGS--DNRNDFW 75
Query: 65 VNLCSSMVHPVGWCATRGKPLIPPR 89
+ S + PVG C G L PP
Sbjct: 76 RLVDSPDIQPVGTCEKEGDLLQPPL 100
Score = 32.5 bits (74), Expect = 0.010
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 236 GFVVGMKLESVDPLNLSDIW 255
F VGMKLE+ DP N + +
Sbjct: 30 DFKVGMKLEARDPRNATSVC 49
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2,
SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 108 bits (271), Expect = 1e-30
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWV 65
+ I+VG +E++++ P +W+ SV + G + LRY G + S D W+
Sbjct: 10 DLITVGSLIELQDS----------QNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWL 59
Query: 66 NLCSSMVHPVGWCATRGKPLIPPRTI--ETKYSDWKDFLVKRLTGARTLP 113
+ PVGWC + PP I S+WK L K L A P
Sbjct: 60 FYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFP 109
Score = 85.4 bits (211), Expect = 1e-21
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 128 FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGW 183
V +E+ D + Q + ++ + VG RL++ Y +D + + PVGW
Sbjct: 12 ITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGW 71
Query: 184 ARRTGHLISAPPLYTDRC 201
+ + + P
Sbjct: 72 CQENKYRMDPPSEIYPLK 89
Score = 33.4 bits (76), Expect = 0.007
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 227 LSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
S +G VG +E D N W
Sbjct: 2 SSGSSGPIDLITVGSLIELQDSQNPFQYW 30
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 106 bits (266), Expect = 4e-30
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
W+ +L + TGA +P+ + F V+M LE VD++ + ++VA++E +
Sbjct: 2 CWEKYLEE--TGASAVPTWAFKVRP---PHSFLVNMKLEAVDRRNPALIRVASVEDVEDH 56
Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTD 199
R+++H+ + F D P IHP GW +TGH + P +
Sbjct: 57 RIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPRE 101
Score = 86.8 bits (215), Expect = 2e-22
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
V MK+E + P VASV + ++ + ++G+ DFW++
Sbjct: 30 VNMKLEAVD----------RRNPALIRVASVEDVEDHRIKIHFDGW--SHGYDFWIDADH 77
Query: 70 SMVHPVGWCATRGKPLIPPRTIETKYS 96
+HP GWC+ G PL PP S
Sbjct: 78 PDIHPAGWCSKTGHPLQPPLGPREPSS 104
Score = 30.6 bits (69), Expect = 0.049
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 235 GGFVVGMKLESVDPLNLSDIW 255
F+V MKLE+VD N + I
Sbjct: 26 HSFLVNMKLEAVDRRNPALIR 46
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 105 bits (263), Expect = 1e-29
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 97 DWKDFLVKRLTGARTLPSNFYHKVQ--ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIV 154
W+ +L + A T P + + Q K+ F++ M LE +D + S + T+ ++
Sbjct: 4 SWESYLEE--QKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVC 61
Query: 155 GKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDR 200
G RL++H+ Y + F + +SP IHP GW +TGH + P Y +
Sbjct: 62 GYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEE 109
Score = 86.8 bits (215), Expect = 2e-22
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 1 MSDCWEN-ISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDS 59
+N +GMK+E + +P +++ +V ++ GY+ L ++G+
Sbjct: 27 AVTHNKNGFKLGMKLEGID----------PQHPSMYFILTVAEVCGYRLRLHFDGY--SE 74
Query: 60 SKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETK 94
DFWVN S +HP GW G L PP+ + +
Sbjct: 75 CHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEE 109
Score = 34.1 bits (78), Expect = 0.004
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 211 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIW 255
A LF T GF +GMKLE +DP + S +
Sbjct: 17 APVSLF--------QDSQAVTHNKNGFKLGMKLEGIDPQHPSMYF 53
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 101 bits (253), Expect = 4e-28
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 97 DWKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVG 155
W +L T A+ P + F + F+V M LE VD+ S V VA++ +V
Sbjct: 2 SWSQYLRS--TRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVD 59
Query: 156 KRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDR 200
R VH+ +DD + C SP IHPVGW ++ G ++ P Y D
Sbjct: 60 SRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDP 106
Score = 80.7 bits (199), Expect = 4e-20
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 1 MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
S VGMK+E + P VASVT + + L+ ++ + D +
Sbjct: 25 HSPPPLGFQVGMKLEAVDR----------MNPSLVCVASVTDVVDSRFLVHFDNW--DDT 72
Query: 61 KDFWVNLCSSMVHPVGWCATRGKPLIPPR 89
D+W + S +HPVGWC +GKPL PP+
Sbjct: 73 YDYWCDPSSPYIHPVGWCQKQGKPLTPPQ 101
Score = 30.3 bits (68), Expect = 0.081
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 229 PGTGQTGGFVVGMKLESVDPLNLSDIW 255
+ GF VGMKLE+VD +N S +
Sbjct: 24 SHSPPPLGFQVGMKLEAVDRMNPSLVC 50
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 98.4 bits (245), Expect = 1e-26
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
VGMK+E + + + V +V ++ GY+ L ++G+ DFWVN +
Sbjct: 16 VGMKLEGVD----------PEHQSVYCVLTVAEVCGYRIKLHFDGY--SDCYDFWVNADA 63
Query: 70 SMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESV 124
+HPVGWC G L PP+ + + +W+ +L + A+ P + + +V
Sbjct: 64 LDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYL--KTCKAQAAPKSLFENQNITV 116
Score = 87.3 bits (216), Expect = 2e-22
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 125 KSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVG 182
K+ F+V M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVG
Sbjct: 11 KNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVG 70
Query: 183 WARRTGHLISAPPLYTDR 200
W +TGH + P Y +
Sbjct: 71 WCEKTGHKLHPPKGYKEE 88
Score = 33.7 bits (77), Expect = 0.005
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 236 GFVVGMKLESVDPLNLSDIWK 256
GF VGMKLE VDP + S
Sbjct: 13 GFKVGMKLEGVDPEHQSVYCV 33
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 87.6 bits (217), Expect = 8e-23
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 128 FRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWAR 185
F+ M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW
Sbjct: 14 FQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCS 73
Query: 186 RTGHLISAPPLYTD 199
+TGH + P +
Sbjct: 74 KTGHPLQPPLSPLE 87
Score = 85.3 bits (211), Expect = 8e-22
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 10 VGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCS 69
MK+EV + P VA+V ++ + ++G+ ++ D+W++ S
Sbjct: 16 KKMKLEVVDK----------RNPMFIRVATVADTDDHRVKVHFDGW--NNCYDYWIDADS 63
Query: 70 SMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK 119
+HPVGWC+ G PL PP + + + G + P +
Sbjct: 64 PDIHPVGWCSKTGHPLQPPLSP-------LELMEASEHGGCSTPGSGPSS 106
Score = 35.2 bits (81), Expect = 0.002
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 224 GTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWK 256
G+ S G GF MKLE VD N I
Sbjct: 1 GSSGSSGVKPPHGFQKKMKLEVVDKRNPMFIRV 33
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 26.6 bits (59), Expect = 1.4
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 203 KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDI 254
K I RD++ G L G + G+ +++ + + L +
Sbjct: 21 KTITIRDESESHFKT------GDVLRVGRFEDDGYFCTIEVTATSTVTLDTL 66
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 328
Score = 27.6 bits (61), Expect = 1.4
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 117 YHKVQESVKSRFRVDMNLEVVDKKRISQ-VKVATIEKIVGKRLQVHYYDDDDGFCC---- 171
K Q ++ ++ D+N ++ +S + + + ++V Y + DG+
Sbjct: 257 MAKFQNMAETAWK-DINEGLLRPTPVSTEFLTPILN--LARIVEVTYIHNLDGYTHPEKV 313
Query: 172 ---HQDSPLIHPV 181
H + L+ +
Sbjct: 314 LKPHIINLLVDSI 326
>d1hska2 d.146.1.1 (A:209-317) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase,
MurB, C-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 109
Score = 24.8 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 115 NFYHKVQESVKSRFRVDMNLEV 136
N H VQ++VK +F +++N EV
Sbjct: 80 NLIHYVQKTVKEKFGIELNREV 101
>d1uxya2 d.146.1.1 (A:201-342) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase,
MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 142
Score = 25.0 bits (54), Expect = 8.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 115 NFYHKVQESVKSRFRVDMNLEVV 137
H V++ V +F V + EV
Sbjct: 105 QLAHHVRQKVGEKFNVWLEPEVR 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.431
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,329
Number of extensions: 47608
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 29
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)