RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6235
         (76 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 39.5 bits (92), Expect = 1e-06
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 37 RREIANSNERRRMQSINAGFQSLRTLLPHHEGEKLSKTIH 76
          RR+ A   ERRR+  +N  F++L+     +  ++L K   
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEI 51


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 39.9 bits (93), Expect = 1e-06
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 37 RREIANSNERRRMQSINAGFQSLRTLLPHHEGEKLSK 73
          +R   N+ ER+R   I   F SLR  +P  +GEK S+
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR 38


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 36.8 bits (85), Expect = 1e-05
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 36 IRREIANSNERRRMQSINAGFQSLRTLLPHHEGEKLSKT 74
          ++RE     E+ R   +      L +L+P    ++    
Sbjct: 1  MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSA 39


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 36.3 bits (84), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 37 RREIANSNERRRMQSINAGFQSLRTLLPHHEGE----KLSK 73
          RR   N  ERRR   IN     L  ++P    E      SK
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSK 45


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 35.3 bits (81), Expect = 8e-05
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 34 KRIRREIANSNERRRMQSINAGFQSLRTLLPHH 66
            ++R   N  ER+R   +   F +LR  +P  
Sbjct: 3  MNVKRRTHNVLERQRRNELKRSFFALRDQIPEL 35


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 38 REIANSNERRRMQSINAGFQSLRTLLPHH-EGEKLSK 73
          R   N  E+ R   +    + L+ L+P   +  + + 
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTT 38


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 30.3 bits (68), Expect = 0.005
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 32 KEKRIRREIANSNERRRMQSINAGFQSLRTLLPHHEGEKLSK 73
          + +  +R   N+ E+R   SIN     L+ L+   E  KL+K
Sbjct: 1  QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNK 41


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.4 bits (52), Expect = 1.7
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 9/46 (19%)

Query: 31 DKEKRIRREIANSNERRRMQSINAGFQSLRTLLPHHEGEKLSKTIH 76
           + KRI +E+AN         I + F+  + L  + + + + K + 
Sbjct: 20 AEIKRINKELAN---------IRSKFKGDKALDGYSKKKYVCKLLF 56


>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction
          centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
          Length = 141

 Score = 23.5 bits (51), Expect = 3.2
 Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 14/58 (24%)

Query: 26 LTPCTDKEKRIRREIANSNERRRMQSINAGFQSLRTL------LPH--------HEGE 69
          L PC D     +R  A  N      S    F+           LPH          G+
Sbjct: 5  LVPCKDSPAFQKRAAAAVNTTADPASGQKRFERYSQALCGEDGLPHLVVDGRLSRAGD 62


>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
           cereus [TaxId: 1396]}
          Length = 164

 Score = 22.3 bits (47), Expect = 7.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 26  LTPCTDKEKRIRREIANSNERRRMQ 50
           + P T++EK   R      E+R ++
Sbjct: 127 VIPDTEEEKESHRIAVLRAEQRHIR 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 257,998
Number of extensions: 9076
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 14
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)