BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6236
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 107/183 (58%), Gaps = 24/183 (13%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLI 60
+NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IHPVGWA GH +
Sbjct: 161 LNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPVGWATTVGHNL 220
Query: 61 SAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
+AP Y +R G DDAT +LF ++ T S G+T FV GMKLE+V
Sbjct: 221 AAPQDYLERMLAGREAMIEVHEDDATIELFKMNF-TFDEYYS--DGKTNSFVEGMKLEAV 277
Query: 116 DPLNLSDICVATVMKME--GYMMLE---------ELDEGMYYED-----PTGMSKISNTA 159
DPLNLS IC ATVM + GYMM+ D Y+E P G ++N +
Sbjct: 278 DPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNIS 337
Query: 160 TQP 162
P
Sbjct: 338 VTP 340
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 153/368 (41%), Gaps = 57/368 (15%)
Query: 16 VATIEKIVGKRLQVHY--YDDDD-GFCCHQDSPLIHPVGW-ARRTGHLISAPPLYTDRCA 71
VATI +I G + + Y +D D F + + +H VGW A R LI PP +
Sbjct: 67 VATILEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLI--PPRTIEHKY 124
Query: 72 KGIRDRDDATEDLFPLSVG-TAGTKLSPGT-------GQTGGFVVGMKLESVDPLNLSDI 123
K +D VG +G + P F +G+ LE VD +S +
Sbjct: 125 KDWKD----------FLVGRLSGARTLPSNFYNKINDSLQSRFRLGLNLECVDKDRISQV 174
Query: 124 CVATVMKMEG---YMMLEELDEGMY-YED-----PTGMSKISN---TATQPAVNSHHGPN 171
+ATV K+ G ++ + D+G + +ED P G + A Q +
Sbjct: 175 RLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPVGWATTVGHNLAAPQDYLERMLAGR 234
Query: 172 RKIKPVKHPGLKLQ------TPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAFYTRE 225
+ V ++ T Y D N +GM + E + +
Sbjct: 235 EAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSF---VEGMKL-EAVDPLNLS------- 283
Query: 226 RRFC--SLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
C ++ VL +MMIR++SY D +G DWFCYH SP IF GFC+ + I++TPP
Sbjct: 284 -SICPATVMAVLKFGYMMIRIDSYQPDASGS-DWFCYHEKSPCIFPAGFCSVNNISVTPP 341
Query: 284 KGYTHATFSWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAH 343
GY TF+WE Y DT ++ A LF+ I +C DL + +A
Sbjct: 342 NGYDSRTFTWEGYLSDTGAVAAGQHLFHDIIPDHGFEVGMSLECADLMDPRLVCVATVAR 401
Query: 344 LITCLNKI 351
++ L K+
Sbjct: 402 VVGRLLKV 409
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVG---KRLQVHYYDDD----DGFCCHQDSPLIHPVGWA 53
M LE VD +S + AT+ ++ +++ Y D D FC H+ SP I P G+
Sbjct: 272 MKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFC 331
Query: 54 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 113
++ P Y R D AG L GF VGM LE
Sbjct: 332 SVNNISVTPPNGYDSRTFTWEGYLSDT-------GAVAAGQHLFHDIIPDHGFEVGMSLE 384
Query: 114 SVDPLNLSDICVATVMKMEGYMMLEELD 141
D ++ +CVATV ++ G ++ D
Sbjct: 385 CADLMDPRLVCVATVARVVGRLLKVHFD 412
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPL------IHPVGWAR 54
M+LE D V VAT+ ++VG+ L+VH+ DG+ D L I+PVGW
Sbjct: 381 MSLECADLMDPRLVCVATVARVVGRLLKVHF----DGWTDEYDQWLDCESADIYPVGWCV 436
Query: 55 RTGHLISAPP 64
H + PP
Sbjct: 437 LVNHKLEGPP 446
>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex
pdb|3F70|B Chain B, Crystal Structure Of L3mbtl2-H4k20me1 Complex
Length = 456
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 140/307 (45%), Gaps = 39/307 (12%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYD--DDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLIHPVGW+RR GH
Sbjct: 158 MRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGH 217
Query: 59 LISAPPLYTDRCAKGIRDRD--DATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVD 116
I +D + DA LF K+ + G F GMKLE++D
Sbjct: 218 GIKMSERRSDMAHHPTFRKIYCDAVPYLF--------KKVRAVYTEGGWFEEGMKLEAID 269
Query: 117 PLNLSDICVATVMK--MEGYMML--------EELDEGMYYEDPTGMSKISNTATQPAVNS 166
PLNL +ICVATV K ++GY+M+ + LD Y+ S+ A PA
Sbjct: 270 PLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYHA--------SSHAIFPATFC 321
Query: 167 HHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVK-HAFYTRE 225
+ ++ P K + Y + T P + M +G+K A E
Sbjct: 322 QKN-DIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDLME 380
Query: 226 RRFCSLAQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
R +A V + R + I + +D + + +D SP I+ G+C G L PP
Sbjct: 381 PRLICVATVKRVVHRLLSIHFDGWDSEYDQWVD-----CESPDIYPVGWCELTGYQLQPP 435
Query: 284 KGYTHAT 290
AT
Sbjct: 436 VAAEPAT 442
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 143/356 (40%), Gaps = 48/356 (13%)
Query: 1 MNLEVVDKKRISQVKVATIEKIV---GKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWA 53
M +EV++ + +V I ++ G R+ + Y +++D F C+ + +HP+GW
Sbjct: 45 MKVEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWC 104
Query: 54 RRTGHLISAP----PLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVG 109
++ P +TD KG + P+ + F G
Sbjct: 105 AINSKILVPPRTIHAKFTD--WKGYLMKRLVGSRTLPVDFHIKMVE-----SMKYPFRQG 157
Query: 110 MKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED-----------PTGMSKISNT 158
M+LE VD +S +A V + G + ++G +D P G S+
Sbjct: 158 MRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGH 217
Query: 159 ATQPAVN----SHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGA 214
+ + +HH RKI P L + Y + ++GM + E
Sbjct: 218 GIKMSERRSDMAHHPTFRKIYCDAVPYLFKKVRAVYTEGG------WFEEGMKL-EAIDP 270
Query: 215 MGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+ + + ++ +VL D ++MI V+ + GLDWFCYH SS IF FC
Sbjct: 271 LNLGNICVA------TVCKVLLDGYLMICVDG--GPSTDGLDWFCYHASSHAIFPATFCQ 322
Query: 275 AHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDL 330
+ I LTPPKGY TF+WE Y T S AP LFN K + DL
Sbjct: 323 KNDIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDL 378
>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2
pdb|3CEY|B Chain B, Crystal Structure Of L3mbtl2
Length = 474
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 140/307 (45%), Gaps = 39/307 (12%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYD--DDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLIHPVGW+RR GH
Sbjct: 176 MRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGH 235
Query: 59 LISAPPLYTDRCAKGIRDRD--DATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVD 116
I +D + DA LF K+ + G F GMKLE++D
Sbjct: 236 GIKMSERRSDMAHHPTFRKIYCDAVPYLF--------KKVRAVYTEGGWFEEGMKLEAID 287
Query: 117 PLNLSDICVATVMK--MEGYMML--------EELDEGMYYEDPTGMSKISNTATQPAVNS 166
PLNL +ICVATV K ++GY+M+ + LD Y+ S+ A PA
Sbjct: 288 PLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYHA--------SSHAIFPATFC 339
Query: 167 HHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVK-HAFYTRE 225
+ ++ P K + Y + T P + M +G+K A E
Sbjct: 340 QKN-DIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDLME 398
Query: 226 RRFCSLAQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
R +A V + R + I + +D + + +D SP I+ G+C G L PP
Sbjct: 399 PRLICVATVKRVVHRLLSIHFDGWDSEYDQWVD-----CESPDIYPVGWCELTGYQLQPP 453
Query: 284 KGYTHAT 290
AT
Sbjct: 454 VAAEPAT 460
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 143/356 (40%), Gaps = 48/356 (13%)
Query: 1 MNLEVVDKKRISQVKVATIEKIV---GKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWA 53
M +EV++ + +V I ++ G R+ + Y +++D F C+ + +HP+GW
Sbjct: 63 MKVEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWC 122
Query: 54 RRTGHLISAP----PLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVG 109
++ P +TD KG + P+ + F G
Sbjct: 123 AINSKILVPPRTIHAKFTD--WKGYLMKRLVGSRTLPVDFHIKMVE-----SMKYPFRQG 175
Query: 110 MKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED-----------PTGMSKISNT 158
M+LE VD +S +A V + G + ++G +D P G S+
Sbjct: 176 MRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGH 235
Query: 159 ATQPAVN----SHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGA 214
+ + +HH RKI P L + Y + ++GM + E
Sbjct: 236 GIKMSERRSDMAHHPTFRKIYCDAVPYLFKKVRAVYTEGG------WFEEGMKL-EAIDP 288
Query: 215 MGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+ + + ++ +VL D ++MI V+ + GLDWFCYH SS IF FC
Sbjct: 289 LNLGNIC------VATVCKVLLDGYLMICVDG--GPSTDGLDWFCYHASSHAIFPATFCQ 340
Query: 275 AHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDL 330
+ I LTPPKGY TF+WE Y T S AP LFN K + DL
Sbjct: 341 KNDIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDL 396
>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1
pdb|3FEO|B Chain B, The Crystal Structure Of Mbtd1
Length = 437
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 33/294 (11%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDD---GFCCHQDSPLIHPVGWARRTG 57
M +EVVDK+ + + +VA +E ++G RL++ Y + +D F CH SPLIH +GW+R G
Sbjct: 160 MRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIG 219
Query: 58 HLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDP 117
H I + D D P A K +G+ F GMKLE++DP
Sbjct: 220 HRFKR---------SDITKKQDGHFDTPPHLF--AKVKEVDQSGE--WFKEGMKLEAIDP 266
Query: 118 LNLSDICVATVMKM--EGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKIK 175
LNLS ICVAT+ K+ +G++M+ +D E G AT P++ +
Sbjct: 267 LNLSTICVATIRKVLADGFLMI-GIDGS---EAADGSDWFCYHATSPSIFPVGFCEINMI 322
Query: 176 PVKHPGLKLQTPIA---YQKDTDPNVIPIQKDGMAVCEKCGAMGVK-HAFYTRERRFCSL 231
+ P + P Y ++T P++ V +G+K A E R +
Sbjct: 323 ELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICV 382
Query: 232 AQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
A V + R + I + ++E+ + +D SP ++ G+C G L PP
Sbjct: 383 ATVTRIIHRLLRIHFDGWEEEYDQWVD-----CESPDLYPVGWCQLTGYQLQPP 431
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 137/336 (40%), Gaps = 47/336 (13%)
Query: 16 VATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCA 71
+A I K+ G + Y +++D G F C+ IHPVGW +G PL R
Sbjct: 65 IAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGK-----PLVPPRTI 119
Query: 72 KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGG------FVVGMKLESVDPLNLSDICV 125
+ A F + T L P Q F M++E VD +L V
Sbjct: 120 QHKYTNWKA----FLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRV 175
Query: 126 ATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQ 185
A V + G + + YE+ + + H G +R I G + +
Sbjct: 176 AVVESVIGGRLR------LVYEESEDRTDDFWCHMHSPLIHHIGWSRSI------GHRFK 223
Query: 186 TPIAYQK-----DTDPNVIP----IQKDGMAVCEKCGAMGVKHAFYTRERRFC--SLAQV 234
+K DT P++ + + G E M ++ C ++ +V
Sbjct: 224 RSDITKKQDGHFDTPPHLFAKVKEVDQSGEWFKE---GMKLEAIDPLNLSTICVATIRKV 280
Query: 235 LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWE 294
L D F+MI ++ + G DWFCYH +SP IF GFC + I LTPP+GYT F W
Sbjct: 281 LADGFLMIGIDG--SEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWF 338
Query: 295 QYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDL 330
Y R+T SI AP +LFN+ + K + DL
Sbjct: 339 DYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDL 374
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + VAT+ +I+ + L++H+ ++++ +SP ++PVGW + TG+
Sbjct: 367 MKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGY 426
Query: 59 LISAPPLYTDR 69
+ P + R
Sbjct: 427 QLQPPASQSSR 437
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 120/294 (40%), Gaps = 29/294 (9%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVGW +TGH
Sbjct: 41 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGH 100
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTK-LSPGTGQT---GGFVVGMKLES 114
+ P KG ++ + + A K L T GF VGMKLE+
Sbjct: 101 KLHPP--------KGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEA 152
Query: 115 VDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
VD N S ICVATV M L D + E + S+ P I
Sbjct: 153 VDKKNPSFICVATVTDMVDNRFLVHFDN--WDESYDYWCEASSPHIHPVGWCKEHRRTLI 210
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAFYTRERR---FCSL 231
P +P +K + Y ++T N +P V G K ++R F +
Sbjct: 211 TPPGYPNVKHFSWDKYLEET--NSLPAPARAFKVKPPHG-FQKKMKLEVVDKRNPMFIRV 267
Query: 232 AQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
A V +D + + + ++ + +D SP I G+C+ G L PP
Sbjct: 268 ATVADTDDHRVKVHFDGWNNCYDYWID-----ADSPDIHPVGWCSKTGHPLQPP 316
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 104 GGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPA 163
GF VGMKLE VDP + S CV TV ++ GY + D Y D ++
Sbjct: 35 NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDG---YSDCYDFWVNADALDIHP 91
Query: 164 VNSHHGPNRKIKP---VKHPGLKLQTPIAYQKDTDPNVIP---IQKDGMAVCEKCGAMGV 217
V K+ P K QT Y K P + + V +G+
Sbjct: 92 VGWCEKTGHKLHPPKGYKEEEFNWQT---YLKTCKAQAAPKSLFENQNITVIPSGFRVGM 148
Query: 218 K-HAFYTRERRFCSLAQVLN--DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
K A + F +A V + D ++ +++DE D++C SSP+I G+C
Sbjct: 149 KLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDE----SYDYWC-EASSPHIHPVGWCK 203
Query: 275 AHGINLTPPKGYTHAT-FSWEQYCRDTNSIPAPPELFNQK 313
H L P GY + FSW++Y +TNS+PAP F K
Sbjct: 204 EHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVK 243
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 271 GFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELF-NQKI 314
G+C G L PPKGY F+W+ Y + + AP LF NQ I
Sbjct: 93 GWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNI 137
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 120/294 (40%), Gaps = 29/294 (9%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVGW +TGH
Sbjct: 41 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGH 100
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTK-LSPGTGQT---GGFVVGMKLES 114
+ P KG ++ + + A K L T GF VGMKLE+
Sbjct: 101 KLHPP--------KGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEA 152
Query: 115 VDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
VD N S ICVATV M L D + E + S+ P I
Sbjct: 153 VDKKNPSFICVATVTDMVDNRFLVHFDN--WDESYDYWCEASSPHIHPVGWCKEHRRTLI 210
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAFYTRERR---FCSL 231
P +P +K + Y ++T N +P V G K ++R F +
Sbjct: 211 TPPGYPNVKHFSWDKYLEET--NSLPAPARAFKVKPPHG-FQKKMKLEVVDKRNPMFIRV 267
Query: 232 AQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
A V +D + + + ++ + +D SP I G+C+ G L PP
Sbjct: 268 ATVADTDDHRVKVHFDGWNNCYDYWID-----ADSPDIHPVGWCSKTGHPLQPP 316
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 104 GGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPA 163
GF VGMKLE VDP + S CV TV ++ GY + D Y D ++
Sbjct: 35 NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDG---YSDCYDFWVNADALDIHP 91
Query: 164 VNSHHGPNRKIKP---VKHPGLKLQTPIAYQKDTDPNVIP---IQKDGMAVCEKCGAMGV 217
V K+ P K QT Y K P + + V +G+
Sbjct: 92 VGWCEKTGHKLHPPKGYKEEEFNWQT---YLKTCKAQAAPKSLFENQNITVIPSGFRVGM 148
Query: 218 K-HAFYTRERRFCSLAQVLN--DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
K A + F +A V + D ++ +++DE D++C SSP+I G+C
Sbjct: 149 KLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDE----SYDYWC-EASSPHIHPVGWCK 203
Query: 275 AHGINLTPPKGYTHAT-FSWEQYCRDTNSIPAPPELFNQK 313
H L P GY + FSW++Y +TNS+PAP F K
Sbjct: 204 EHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVK 243
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 271 GFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELF-NQKI 314
G+C G L PPKGY F+W+ Y + + AP LF NQ I
Sbjct: 93 GWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNI 137
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 123/311 (39%), Gaps = 59/311 (18%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
N S +CVA+V + L D Y+ DP+ P ++ ++
Sbjct: 158 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS----------PYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQV-----LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+RR +L +V + D + I + + + +D P I G+C+
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWID-----ADHPDIHPAGWCS 308
Query: 275 AHGINLTPPKG 285
G L PP G
Sbjct: 309 KTGHPLQPPLG 319
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D Y E ++
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDG--YSEXHDFWVNANSPD 89
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
PA G K G KLQ P Y+++ ++ K + H
Sbjct: 90 IHPA-----GWFEKT------GHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 138
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 139 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 192
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRPPHSFLVN 252
Query: 322 LTKE 325
+ E
Sbjct: 253 MKLE 256
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Dimethyl-Lysine And In Chimera With Histone
H3.3(28-34)
Length = 329
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 124/307 (40%), Gaps = 51/307 (16%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
N S +CVA+V + L D Y+ DP + P ++ ++
Sbjct: 158 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDP----------SSPYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQVLN-DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGI 278
+RR +L +V + + R+ + + + G D F P I G+C+ G
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYD-FWIDADHPDIHPAGWCSKTGH 312
Query: 279 NLTPPKG 285
L PP G
Sbjct: 313 PLQPPLG 319
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D Y E ++
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDG--YSEXHDFWVNANSPD 89
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
PA G K G KLQ P Y+++ ++ K + H
Sbjct: 90 IHPA-----GWFEKT------GHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 138
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 139 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDDT----YDYWC-DP 192
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRPPHSFLVN 252
Query: 322 LTKE 325
+ E
Sbjct: 253 MKLE 256
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-Ii) At 1.55 Angstrom
Length = 331
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 46 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 105
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 106 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 161
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTG 151
N S +CVA+V + L D Y+ DP+
Sbjct: 162 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS 198
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 153 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 212
Query: 59 LISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
++ P Y D C + + A+ +V T K+ P F+V MKLE+V
Sbjct: 213 PLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNMKLEAV 262
Query: 116 DPLNLSDICVATVMKMEGYMMLEELD 141
D N + I VA+V +E + + D
Sbjct: 263 DRRNPALIRVASVEDVEDHRIKIHFD 288
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH
Sbjct: 257 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 316
Query: 59 LISAP 63
+ P
Sbjct: 317 PLQPP 321
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 36 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSECHDFW 86
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 87 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 142
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 143 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 196
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 197 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVN 256
Query: 322 LTKE 325
+ E
Sbjct: 257 MKLE 260
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|B Chain B, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|C Chain C, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJD|A Chain A, Crystal Structure Of L3mbtl1 Protein
pdb|2RJE|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|B Chain B, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJF|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|E Chain E, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|3UWN|A Chain A, The 3-Mbt Repeat Domain Of L3mbtl1 In Complex With A
Methyl-Lysine Mimic
Length = 331
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 43 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 102
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 103 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 158
Query: 119 NLSDICVATVMKMEGYMMLEELD 141
N S +CVA+V + L D
Sbjct: 159 NPSLVCVASVTDVVDSRFLVHFD 181
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 150 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 209
Query: 59 LISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
++ P Y D C + + A+ +V T K+ P F+V MKLE+V
Sbjct: 210 PLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNMKLEAV 259
Query: 116 DPLNLSDICVATVMKMEGYMMLEELD 141
D N + I VA+V +E + + D
Sbjct: 260 DRRNPALIRVASVEDVEDHRIKIHFD 285
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH
Sbjct: 254 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 313
Query: 59 LISAP 63
+ P
Sbjct: 314 PLQPP 318
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 33 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSECHDFW 83
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 84 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 139
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 140 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 193
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 194 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVN 253
Query: 322 LTKE 325
+ E
Sbjct: 254 MKLE 257
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|B Chain B, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|C Chain C, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
Length = 345
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 57 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 116
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 117 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 172
Query: 119 NLSDICVATVMKMEGYMMLEELD 141
N S +CVA+V + L D
Sbjct: 173 NPSLVCVASVTDVVDSRFLVHFD 195
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 164 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 223
Query: 59 LISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
++ P Y D C + + A+ +V T K+ P F+V MKLE+V
Sbjct: 224 PLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNMKLEAV 273
Query: 116 DPLNLSDICVATVMKMEGYMMLEELD 141
D N + I VA+V +E + + D
Sbjct: 274 DRRNPALIRVASVEDVEDHRIKIHFD 299
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH
Sbjct: 268 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 327
Query: 59 LISAP 63
+ P
Sbjct: 328 PLQPP 332
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 47 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSECHDFW 97
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 98 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 153
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 154 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDDT----YDYWC-DP 207
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 208 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVN 267
Query: 322 LTKE 325
+ E
Sbjct: 268 MKLE 271
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355n Point Mutation
Length = 319
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 123/311 (39%), Gaps = 59/311 (18%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+V+ +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVNRM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
N S +CVA+V + L D Y+ DP+ P ++ ++
Sbjct: 158 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS----------PYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQV-----LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+RR +L +V + D + I + + + +D P I G+C+
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWID-----ADHPDIHPAGWCS 308
Query: 275 AHGINLTPPKG 285
G L PP G
Sbjct: 309 KTGHPLQPPLG 319
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 94/251 (37%), Gaps = 51/251 (20%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D Y E ++
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDG--YSEXHDFWVNANSPD 89
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
PA G K G KLQ P Y+++ + KH
Sbjct: 90 IHPA-----GWFEKT------GHKLQPPKGYKEEE-------FSWSQYLRSTRAQAAPKH 131
Query: 220 AFYTRERR------------------------FCSLAQVLNDRFMMIRVNSYDEDTNGGL 255
F ++ S+ V++ RF+ + +++D+
Sbjct: 132 LFVSQSHSPPPLGFQVGMKLEAVNRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TY 186
Query: 256 DWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKI 314
D++C SSPYI G+C G LTPP+ Y F WE+Y +T + P F +
Sbjct: 187 DYWC-DPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRP 245
Query: 315 NGEALLTLTKE 325
L+ + E
Sbjct: 246 PHSFLVNMKLE 256
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17- 25), Trigonal Form
pdb|3P8H|A Chain A, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|B Chain B, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|C Chain C, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
Length = 323
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 43 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 102
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 103 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 158
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTG 151
N S +CVA+V + L D Y+ DP+
Sbjct: 159 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS 195
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 150 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 209
Query: 59 LISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
++ P Y D C + + A+ +V T K+ P F+V MKLE+V
Sbjct: 210 PLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNMKLEAV 259
Query: 116 DPLNLSDICVATVMKMEGYMMLEELD 141
D N + I VA+V +E + + D
Sbjct: 260 DRRNPALIRVASVEDVEDHRIKIHFD 285
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH
Sbjct: 254 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 313
Query: 59 LISAP 63
+ P
Sbjct: 314 PLQPP 318
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 33 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSECHDFW 83
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 84 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 139
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 140 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 193
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 194 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVN 253
Query: 322 LTKE 325
+ E
Sbjct: 254 MKLE 257
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
In Complex With H1.5k27me2 At 1.66 Angstrom
pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
Bound To Dimethyl-lysine
Length = 345
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 51 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 110
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 111 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 166
Query: 119 NLSDICVATVMKMEGYMMLEELD 141
N S +CVA+V + L D
Sbjct: 167 NPSLVCVASVTDVVDSRFLVHFD 189
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 158 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 217
Query: 59 LISAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
++ P Y D C + + A+ +V T K+ P F+V MKLE+V
Sbjct: 218 PLTPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNMKLEAV 267
Query: 116 DPLNLSDICVATVMKMEGYMMLEELD 141
D N + I VA+V +E + + D
Sbjct: 268 DRRNPALIRVASVEDVEDHRIKIHFD 293
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH
Sbjct: 262 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 321
Query: 59 LISAP 63
+ P
Sbjct: 322 PLQPP 326
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 41 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSECHDFW 91
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 92 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 147
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 148 SPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 201
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 202 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVN 261
Query: 322 LTKE 325
+ E
Sbjct: 262 MKLE 265
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358q Point Mutation
Length = 319
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 59/311 (18%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
S +CVA+V + L D Y+ DP+ P ++ ++
Sbjct: 158 QPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS----------PYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQV-----LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+RR +L +V + D + I + + + +D P I G+C+
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWID-----ADHPDIHPAGWCS 308
Query: 275 AHGINLTPPKG 285
G L PP G
Sbjct: 309 KTGHPLQPPLG 319
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSEXHDFW 82
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 83 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 138
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 139 SPPPLGFQVGMKLEAVDRMQPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 192
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRPPHSFLVN 252
Query: 322 LTKE 325
+ E
Sbjct: 253 MKLE 256
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358a Point Mutation
Length = 319
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 59/311 (18%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+VD +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVDRM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
S +CVA+V + L D Y+ DP+ P ++ ++
Sbjct: 158 APSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS----------PYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQV-----LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+RR +L +V + D + I + + + +D P I G+C+
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWID-----ADHPDIHPAGWCS 308
Query: 275 AHGINLTPPKG 285
G L PP G
Sbjct: 309 KTGHPLQPPLG 319
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFD---------GYSEXHDFW 82
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 83 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 138
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 139 SPPPLGFQVGMKLEAVDRMAPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 192
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLT 321
SSPYI G+C G LTPP+ Y F WE+Y +T + P F + L+
Sbjct: 193 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRPPHSFLVN 252
Query: 322 LTKE 325
+ E
Sbjct: 253 MKLE 256
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355a Point Mutation
Length = 319
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 59/311 (18%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 42 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGH 101
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
+ P Y + + P + + + P GF VGMKLE+V +
Sbjct: 102 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGMKLEAVARM 157
Query: 119 NLSDICVATVMKMEGYMMLEELDEG----MYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
N S +CVA+V + L D Y+ DP+ P ++ ++
Sbjct: 158 NPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS----------PYIHPVGWCQKQG 207
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGV---------KHAFYTR- 224
KP+ P Q DP+ +K E+ GA V H+F
Sbjct: 208 KPLTPP----------QDYPDPDNFXWEK----YLEETGASAVPTWAFKVRPPHSFLVNM 253
Query: 225 -----ERRFCSLAQV-----LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+RR +L +V + D + I + + + +D P I G+C+
Sbjct: 254 KLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWID-----ADHPDIHPAGWCS 308
Query: 275 AHGINLTPPKG 285
G L PP G
Sbjct: 309 KTGHPLQPPLG 319
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 23/237 (9%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +GMKLE +DP + S + TV ++ GY + D Y + +N+
Sbjct: 32 THNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDG---YSEXHDFWVNANSP 88
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCG------ 213
K++P K + + Y + T P + V +
Sbjct: 89 DIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKH---LFVSQSHSPPPLGF 145
Query: 214 AMGVKHAFYTRERR----FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFA 269
+G+K R S+ V++ RF+ + +++D+ D++C SSPYI
Sbjct: 146 QVGMKLEAVARMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DPSSPYIHP 199
Query: 270 PGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQKINGEALLTLTKE 325
G+C G LTPP+ Y F WE+Y +T + P F + L+ + E
Sbjct: 200 VGWCQKQGKPLTPPQDYPDPDNFXWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLE 256
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OZ3|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
Length = 331
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 3 LEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLI 60
LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G +
Sbjct: 155 LEAVDRXNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPL 214
Query: 61 SAPPLYTDR---CAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDP 117
+ P Y D C + + A+ +V T K+ P F+V KLE+VD
Sbjct: 215 TPPQDYPDPDNFCWEKYLEETGAS------AVPTWAFKVRP----PHSFLVNXKLEAVDR 264
Query: 118 LNLSDICVATVMKMEGYMMLEELD 141
N + I VA+V +E + + D
Sbjct: 265 RNPALIRVASVEDVEDHRIKIHFD 288
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 3 LEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLI 60
LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH +
Sbjct: 48 LEGIDPQHPSXYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKL 107
Query: 61 SAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNL 120
P Y + + P + + + P GF VG KLE+VD N
Sbjct: 108 QPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPL----GFQVGXKLEAVDRXNP 163
Query: 121 SDICVATVMKMEGYMMLEELDEG----MYYEDPTG 151
S +CVA+V + L D Y+ DP+
Sbjct: 164 SLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSS 198
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 3 LEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDSPLIHPVGWARRTGHLI 60
LE VD++ + ++VA++E + R+++H+ G F D P IHP GW +TGH +
Sbjct: 259 LEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPL 318
Query: 61 SAP 63
P
Sbjct: 319 QPP 321
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%)
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTA 159
T GF +G KLE +DP + S + TV ++ GY + D G S+ +
Sbjct: 36 THNKNGFKLGXKLEGIDPQHPSXYFILTVAEVCGYRLRLHFD---------GYSECHDFW 86
Query: 160 TQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKH 219
VN++ + G KLQ P Y+++ ++ K + H
Sbjct: 87 ----VNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSH 142
Query: 220 A-----------FYTRERR------FCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ +R S+ V++ RF+ + +++D+ D++C
Sbjct: 143 SPPPLGFQVGXKLEAVDRXNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DP 196
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELF 310
SSPYI G+C G LTPP+ Y F WE+Y +T + P F
Sbjct: 197 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAF 245
>pdb|2BIV|A Chain A, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|B Chain B, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|C Chain C, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
Length = 243
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + V +AT+ I G RL++ D+ + F DSP I PVG + G
Sbjct: 67 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGD 126
Query: 59 LISAPPLYTDRCA-------KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMK 111
L+ P Y + K + + A+ LF K P F VGMK
Sbjct: 127 LLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLF---------KKEPPKPPLNNFKVGMK 177
Query: 112 LESVDPLNLSDICVATVMKMEG 133
LE++D N IC AT+ ++G
Sbjct: 178 LEAIDKKNPYLICPATIGDVKG 199
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 34/195 (17%)
Query: 106 FVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED-----------PTGMSK 154
F VGMKLE+ DP N + +C+ATV+ + G + LD D P G +
Sbjct: 63 FKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCE 122
Query: 155 ISNTATQPAV----NSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCE 210
QP + N+ P +K + G ++ + ++K +P P+ + V
Sbjct: 123 KEGDLLQPPLGYQMNTSSWPMFLLKTLN--GSEMASATLFKK--EPPKPPL--NNFKVGM 176
Query: 211 KCGAMGVKHAFYTRERRFC--SLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIF 268
K A+ K+ + C ++ V D + I + + +G D++C + S IF
Sbjct: 177 KLEAIDKKNPYL-----ICPATIGDVKGDE-VHITFDGW----SGAFDYWCKY-DSRDIF 225
Query: 269 APGFCAAHGINLTPP 283
G+C G L PP
Sbjct: 226 PAGWCRLTGDVLQPP 240
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +DKK + ATI + G + + + + + C DS I P GW R TG
Sbjct: 176 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGD 235
Query: 59 LISAP 63
++ P
Sbjct: 236 VLQPP 240
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQ 312
F WE+Y ++T SI AP E F Q
Sbjct: 33 FHWEEYLKETGSISAPSECFRQ 54
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 258 FCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDT 300
F + SP I G C G L PP GY T SW + T
Sbjct: 106 FWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKT 148
>pdb|1WJQ|A Chain A, Solution Structure Of The Third Mbt Domain From Human
Kiaa1798 Protein
Length = 107
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW +TGH
Sbjct: 18 MKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGH 77
Query: 59 LISAP 63
+ P
Sbjct: 78 PLQPP 82
>pdb|4EDU|A Chain A, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 215
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + V +AT+ I G RL++ D+ + F DSP I PVG + G
Sbjct: 39 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGD 98
Query: 59 LISAPPLYTDRCA-------KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMK 111
L+ P Y + + + + A+ LF K P F VGMK
Sbjct: 99 LLQPPLGYQMNTSSWPMFLLETLNGSEMASATLF---------KKEPPKPPLNNFKVGMK 149
Query: 112 LESVDPLNLSDICVATVMKMEG 133
LE++D N IC AT+ ++G
Sbjct: 150 LEAIDKKNPYLICPATIGDVKG 171
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +DKK + ATI + G + + + + + C DS I P GW R TG
Sbjct: 148 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGD 207
Query: 59 LISAP 63
++ P
Sbjct: 208 VLQPP 212
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Query: 106 FVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED-----------PTGMSK 154
F VGMKLE+ DP N + +C+ATV+ + G + LD D P G +
Sbjct: 35 FKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCE 94
Query: 155 ISNTATQPAV----NSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCE 210
QP + N+ P ++ + G ++ + ++K +P P+ + V
Sbjct: 95 KEGDLLQPPLGYQMNTSSWPMFLLETLN--GSEMASATLFKK--EPPKPPL--NNFKVGM 148
Query: 211 KCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAP 270
K A+ K+ + ++ V D + I + + +G D++C + S IF
Sbjct: 149 KLEAIDKKNPYLICP---ATIGDVKGDE-VHITFDGW----SGAFDYWCKYDSRD-IFPA 199
Query: 271 GFCAAHGINLTPP 283
G+C G L PP
Sbjct: 200 GWCRLTGDVLQPP 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQ 312
F WE+Y ++T SI AP E F Q
Sbjct: 5 FHWEEYLKETGSISAPSECFRQ 26
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 258 FCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDT 300
F + SP I G C G L PP GY T SW + +T
Sbjct: 78 FWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLET 120
>pdb|1OI1|A Chain A, Crystal Structure Of The Mbt Domains Of Human Scml2
pdb|2VYT|A Chain A, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine.
pdb|2VYT|B Chain B, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine
Length = 221
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + V +AT+ I G RL++ D+ + F DSP I PVG + G
Sbjct: 45 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGD 104
Query: 59 LISAPPLYTDRCA-------KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMK 111
L+ P Y + + + + A+ LF K P F VGMK
Sbjct: 105 LLQPPLGYQMNTSSWPMFLLETLNGSEMASATLF---------KKEPPKPPLNNFKVGMK 155
Query: 112 LESVDPLNLSDICVATVMKMEG 133
LE++D N IC AT+ ++G
Sbjct: 156 LEAIDKKNPYLICPATIGDVKG 177
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +DKK + ATI + G + + + + + C DS I P GW R TG
Sbjct: 154 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGD 213
Query: 59 LISAP 63
++ P
Sbjct: 214 VLQPP 218
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 106 FVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
F VGMKLE+ DP N + +C+ATV+ + G + LD
Sbjct: 41 FKVGMKLEARDPRNATSVCIATVIGITGARLRLRLD 76
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQ 312
F WE+Y ++T SI AP E F Q
Sbjct: 11 FHWEEYLKETGSISAPSECFRQ 32
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 258 FCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDT 300
F + SP I G C G L PP GY T SW + +T
Sbjct: 84 FWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLET 126
>pdb|1WJS|A Chain A, Solution Structure Of The First Mbt Domain From Human
Kiaa1798 Protein
Length = 127
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVGW +TGH
Sbjct: 18 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGH 77
Query: 59 LISAPPLYTDR 69
+ P Y +
Sbjct: 78 KLHPPKGYKEE 88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 93 GTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
G+ S G GF VGMKLE VDP + S CV TV ++ GY + D
Sbjct: 1 GSSGSSGPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFD 49
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 271 GFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELF-NQKI 314
G+C G L PPKGY F+W+ Y + + AP LF NQ I
Sbjct: 70 GWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNI 114
>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1
Length = 212
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + +AT+ + G RL++ D+ + F DS I P+G + G
Sbjct: 36 MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGG 95
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSP--------GTGQTGGFVVGM 110
++ PPL G R + ++ +F L G +++P + F +GM
Sbjct: 96 MLQ-PPL-------GFR-LNASSWPMFLLKT-LNGAEMAPIRIFHKEPPSPSHNFFKMGM 145
Query: 111 KLESVDPLNLSDICVATVMKMEGYMMLEELD 141
KLE+VD N IC AT+ ++ G +L D
Sbjct: 146 KLEAVDRKNPHFICPATIGEVRGSEVLVTFD 176
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 106 FVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPAVN 165
F + MKLE+ DP N + C+ATV+ + G + LD D + + + QP N
Sbjct: 32 FKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRL--VDSAEIQPIGN 89
Query: 166 SHHGPNRKIKPVKHPGLKLQT---PIAYQKDTD-PNVIPIQ---KDGMAVCEKCGAMGVK 218
P+ G +L P+ K + + PI+ K+ + MG+K
Sbjct: 90 CEKNGGMLQPPL---GFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMK 146
Query: 219 -HAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHG 277
A + F A + R + V ++D G D++C S IF G+C+ G
Sbjct: 147 LEAVDRKNPHFICPATIGEVRGSEVLV-TFD-GWRGAFDYWC-RFDSRDIFPVGWCSLTG 203
Query: 278 INLTPP 283
NL PP
Sbjct: 204 DNLQPP 209
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQ 312
F+W++Y ++T S+PAP F Q
Sbjct: 2 FTWDKYLKETCSVPAPVHCFKQ 23
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm)
pdb|2R58|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Di-Methyl Lysine
pdb|2R5A|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Methyl Lysine
pdb|2R5M|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Peptide R-(Me)k-S
Length = 265
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + ++ +AT+ ++G RL++ D + F DS IH +G + G
Sbjct: 39 MKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGG 98
Query: 59 LISAPPL--------YTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGM 110
++ PPL + K + + A E++F L F VG
Sbjct: 99 MLQ-PPLGFCMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENL---------FKVGQ 148
Query: 111 KLESVDPLNLSDICVATV 128
KLE+VD N IC ATV
Sbjct: 149 KLEAVDKKNPQLICCATV 166
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 106 FVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
F +GMKLE++DP N++ C+ATV+ + G + LD
Sbjct: 35 FKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLD 70
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 3 LEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLI 60
LE VDKK + AT++ I ++ V + + + C+ S I P GW R+ H +
Sbjct: 150 LEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPM 209
Query: 61 SAP 63
P
Sbjct: 210 QPP 212
>pdb|2W0T|A Chain A, Solution Structure Of The Fcs Zinc Finger Domain Of Human
Lmbl2
Length = 43
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 207 AVCEKCGAMGVKHAFYTRERRFC 229
AVCE CG +G + AF+++ +RFC
Sbjct: 7 AVCEMCGIVGTREAFFSKTKRFC 29
>pdb|1PK1|B Chain B, Hetero Sam Domain Structure Of Ph And Scm.
pdb|1PK1|D Chain D, Hetero Sam Domain Structure Of Ph And Scm
Length = 89
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 299 DTNSIPAPPELFNQ-KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLN 349
+ NS+ +LF + +I+G+ALL L E+ G K GP++KI +L+ +N
Sbjct: 29 NDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVN 80
>pdb|1PK3|A Chain A, Scm Sam Domain
pdb|1PK3|B Chain B, Scm Sam Domain
pdb|1PK3|C Chain C, Scm Sam Domain
Length = 89
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 299 DTNSIPAPPELFNQ-KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLN 349
+ NS+ +LF + +I+G+ALL L E G K GP++KI +L+ +N
Sbjct: 29 NDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNKVN 80
>pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure
Length = 89
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 308 ELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKI 351
+ Q+I+G+ALL L ++ + G K GP++KI + + ++
Sbjct: 38 DFIQQEIDGQALLRLKEKHLVNAXGXKLGPALKIVAKVESIKEV 81
>pdb|1PK1|A Chain A, Hetero Sam Domain Structure Of Ph And Scm.
pdb|1PK1|C Chain C, Hetero Sam Domain Structure Of Ph And Scm
Length = 89
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 308 ELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKI 351
+ Q+I+G+ALL L ++ + G K GP+ KI + + ++
Sbjct: 38 DFIQQEIDGQALLLLKEKHLVNAXGXKLGPARKIVAKVESIKEV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,967,126
Number of Sequences: 62578
Number of extensions: 517295
Number of successful extensions: 1135
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 161
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)