RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6236
(358 letters)
>gnl|CDD|202414 pfam02820, MBT, mbt repeat. The function of this repeat is
unknown, but is found in a number of nuclear proteins
such as drosophila sex comb on midleg protein. The
repeat is found in up to four copies. The repeat
contains a completely conserved glutamate at its amino
terminus that may be important for function.
Length = 73
Score = 93.9 bits (234), Expect = 3e-24
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S + AT+ + G RL++ + +D D F CH DSP IHPVGW + GH
Sbjct: 1 MKLEAVDPRNPSLICPATVVTVRGYRLRLRFDGWDSDYDFWCHVDSPDIHPVGWCEKNGH 60
Query: 59 LISAPPLYTDR 69
++ PP Y +
Sbjct: 61 VLQPPPGYRSK 71
Score = 49.6 bits (119), Expect = 4e-08
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 237 DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATF 291
+ +R + +D D D++C H+ SP I G+C +G L PP GY TF
Sbjct: 24 GYRLRLRFDGWDSDY----DFWC-HVDSPDIHPVGWCEKNGHVLQPPPGYRSKTF 73
Score = 46.1 bits (110), Expect = 6e-07
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 110 MKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
MKLE+VDP N S IC ATV+ + GY + D
Sbjct: 1 MKLEAVDPRNPSLICPATVVTVRGYRLRLRFD 32
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and
vertebrate SCML2. Present in Drosophila Scm, l(3)mbt,
and vertebrate SCML2. These proteins are involved in
transcriptional regulation.
Length = 96
Score = 91.5 bits (228), Expect = 5e-23
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S + VAT+ ++ G RL +H+ +DD F CH DSP I PVGW + GH
Sbjct: 32 MKLEAVDPRNPSLICVATVVEVKGYRLLLHFDGWDDKYDFWCHADSPDIFPVGWCEKNGH 91
Query: 59 LISAP 63
+ P
Sbjct: 92 PLQPP 96
Score = 52.3 bits (126), Expect = 7e-09
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 98 PGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
P GF VGMKLE+VDP N S ICVATV++++GY +L D
Sbjct: 20 PVDSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRLLLHFD 63
Score = 50.3 bits (121), Expect = 3e-08
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 225 ERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPP 283
++ +V +++ + +D+ F H SP IF G+C +G L PP
Sbjct: 44 LICVATVVEVK-GYRLLLHFDGWDDK-----YDFWCHADSPDIFPVGWCEKNGHPLQPP 96
Score = 27.6 bits (62), Expect = 3.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 294 EQYCRDTNSIPAPPELFNQK 313
E Y +T + AP ELF Q
Sbjct: 1 EDYLEETGARAAPVELFKQP 20
>gnl|CDD|188979 cd09580, SAM_Scm-like-4MBT, SAM domain of Scm-like-4MBT proteins of
Polycomb group. SAM (sterile alpha motif) domain of
Scm-like-4MBT (Sex comb on midleg like, Malignant Brain
Tumor) subfamily proteins of the polycomb group is a
putative protein-protein interaction domain.
Additionally to the SAM domain, most of the proteins of
this subfamily have 4 MBT repeats. In Drosophila
SAM-Scm-like-4MBT protein (known as dSfmbt) is a member
of Pho repressive complex (PhoRC). Additionally to
dSfmbt, the PhoRC complex includes Pho or Pho-like
proteins. This complex is responsible for HOX (Homeobox)
gene silencing: Pho or Pho-like proteins bind DNA and
dSmbt binds methylated histones. dSmbt can interact with
mono- and di-methylated histones H3 and H4 (however this
activity has been shown for the MBT repeats, while exact
function of the SAM domain is unclear). Besides
interaction with histones, dSmbt can interact with Scm
(a member of PRC complex), but this interaction also
seems to be SAM domain independent.
Length = 67
Score = 48.9 bits (117), Expect = 6e-08
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 311 NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLI 345
Q I+G+ LL+LTKE+ LTG K GPS+KI LI
Sbjct: 27 RQNIDGKRLLSLTKEQIMTLTGMKVGPSLKIYDLI 61
>gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group. SAM (sterile
alpha motif) domain of Polycomb group is a
protein-protein interaction domain. The Polycomb group
includes transcriptional repressors which are involved
in the regulation of some key regulatory genes during
development in many organisms. They are best known for
silencing Hox (Homeobox) genes. Polycomb proteins work
together in large multimeric and chromatin-associated
complexes. They organize chromatin of the target genes
and maintain repressed states during many cell
divisions. Polycomb proteins are classified based on
their common function, but not on conserved domains
and/or motifs; however many Polycomb proteins (members
of PRC1 class complex) contain SAM domains which are
more similar to each other inside of the Polycomb group
than to SAM domains outside of it. Most information
about structure and function of Polycomb SAM domains
comes from studies of Ph (Polyhomeotic) and Scm (Sex
comb on midleg) proteins. Polycomb SAM domains usually
can be found at the C-terminus of the proteins. Some
members of this group contain, in addition to the SAM
domain, MTB repeats, Zn finger, and/or DUF3588 domains.
Polycomb SAM domains can form homo- and/or
heterooligomers through ML and EH surfaces. SAM/SAM
oligomers apparently play a role in transcriptional
repression through polymerization along the chromosome.
Polycomb proteins are known to be highly expressed in
some cells years before their cancer pathology; thus
they are attractive markers for early cancer therapy.
Length = 64
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 295 QYCRDTNSIPAPPELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLI 345
Q+ + + E+F Q+I+G+ALL LT++ G K GP++KI + I
Sbjct: 11 QFIKSLDGCAEYAEVFREQEIDGQALLLLTEDDLLKGMGLKLGPALKIYNHI 62
>gnl|CDD|188980 cd09581, SAM_Scm-like-4MBT1,2, SAM domain of Scm-like-4MBT1,2
proteins of Polycomb group. SAM (sterile alpha motif)
domain of Scm-like-4MBT1,2 (Sex comb on midleg,
Malignant Brain Tumor) subfamily proteins (also known as
Sfmbt1,2 proteins) is a putative protein-protein
interaction domain. Proteins of this subfamily are
transcriptional regulators belonging to Polycomb group.
The majority of them are multidomain proteins: in
addition to the C-terminal SAM domain, they contain four
MBT repeats and DUF5388 domain. The MBT repeats of the
human sfmbt1 protein are responsible for association
with the nuclear matrix and for selective binding of H3
histone N-terminal tails, while the exact function of
the SAM domain is unclear.
Length = 85
Score = 36.7 bits (85), Expect = 0.002
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 296 YCRDTNSIPAPPELFNQKINGEALLTLT---KEKCFDLTGGKAGPSIKIAHLI 345
+ + T+ P +Q+I+G+ALL LT ++C +L K GP+IK+ H I
Sbjct: 23 FIKSTDCAPLAKIFKDQEIDGQALLLLTLPTVQECMEL---KLGPAIKLCHHI 72
>gnl|CDD|188981 cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-like-3MBT3,4
proteins of Polycomb group. SAM (sterile alpha motif)
domain of Scm-like-3MBT3,4 (Sex comb on midleg,
Malignant brain tumor) subfamily proteins (also known as
L3mbtl3,4 proteins) is a putative protein-protein
interaction domain. Proteins of this subfamily are
predicted transcriptional regulators belonging to
Polycomb group. The majority of them are multidomain
proteins: in addition to the C-terminal SAM domain, they
contain three MBT repeats and Zn finger domain. Murine
L3mbtl3 protein of this subfamily is essential for
maturation of myeloid progenitor cells during
differentiation. Human L3mbtl4 is a potential tumor
suppressor gene in breast cancer, while deregulation of
L3MBTL3 is associated with neuroblastoma.
Length = 66
Score = 34.6 bits (80), Expect = 0.006
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 311 NQKINGEALLTLTKEKCFDLTGGKAGPSIKI 341
+++I+GEA L LT+ + G K GP++KI
Sbjct: 28 DEQIDGEAFLLLTQSDLVKILGIKLGPALKI 58
>gnl|CDD|188927 cd09528, SAM_Samd9_Samd9L, SAM domain of Samd9/Samd9L subfamily.
SAM (sterile alpha motif) domain of Samd9/Samd9L
subfamily is a putative protein-protein interaction
domain. SAM is a widespread domain in signaling
proteins. Samd9 is a tumor suppressor gene. It is
involved in death signaling of malignant glioblastoma.
Samd9 suppression blocks cancer cell death induced by
HVJ-E or IFN-beta treatment. Deleterious mutations in
Samd9 lead to normophosphatemic familial tumoral
calcinosis, a cutaneous disorder characterized by
cutaneous calcification or ossification.
Length = 64
Score = 33.2 bits (76), Expect = 0.018
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 309 LFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLN 349
L+ +++ G L LT+E D+ G GP++ I H LN
Sbjct: 25 LYEEEVTGAVLKELTEEDLVDM-GLPHGPALLIIHSFNELN 64
>gnl|CDD|188935 cd09536, SAM_Ste50_fungal, SAM domain of Ste50 fungal subfamily.
SAM (sterile alpha motif) domain of Ste50 fungal
subfamily is a protein-protein interaction domain.
Proteins of this subfamily have SAM domain at the
N-terminus and Ras-associated UBQ superfamily domain at
the C-terminus. They participate in regulation of mating
pheromone response, invasive growth and high osmolarity
growth response, and contribute to cell wall integrity
in vegetative cells. Ste50 of S.cerevisiae acts as an
adaptor protein between G protein and MAP triple kinase
Ste11. Ste50 proteins are able to form homooligomers,
binding each other via their SAM domains, as well as
heterodimers and heterogeneous complexes with SAM domain
or SAM homodimers of MAPKKK Ste11 protein kinase.
Length = 74
Score = 33.2 bits (76), Expect = 0.026
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 295 QYCRDTNSIPAPPELFNQ----KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNK 350
++C + + L ++ I G L LT E C +L +I+ L +NK
Sbjct: 13 KWCISSLGLDDGDPLCDRLRENNITGSLLSELTLEDCKELCDNDLSLAIR---LKLLINK 69
Query: 351 IVQ 353
+
Sbjct: 70 LRD 72
>gnl|CDD|188977 cd09578, SAM_Scm, SAM domain of Scm proteins of Polycomb group.
SAM (sterile alpha motif) domain of Scm (Sex comb on
midleg) subfamily of Polycomb group is a protein-protein
interaction domain. Proteins of this subfamily are
transcriptional repressors associated with PRC1 complex.
This group includes invertebrate Scm protein and
chordate Scm homolog 1 and Scm-like 1, 2, 3 proteins.
Most have a SAM domain, two MBT repeats, and a DUF3588
domain, except Scm-like 4 proteins which do not have MBT
repeats. Originally the Scm protein was described in
Drosophila as a regulator required for proper spatial
expression of homeotic genes. It plays a major role
during early embryogenesis. SAM domains of Scm proteins
can interact with each other, forming homooligomers, as
well as with SAM domains of other proteins, in
particular with SAM domains of Ph (polyhomeotic)
proteins, forming heterooligomers. Homooligomers are
similar to the ones formed by SAM Pointed domains of the
TEL proteins. Such SAM/SAM oligomers apparently play a
role in transcriptional repression through
polymerization along the chromosome. Mammalian Scmh1
protein is known be indispensible member of PRC1
complex; it plays a regulatory role for the complex
during meiotic prophase of male sperm cells, and is
particularly involved in regulation of chromatin
modification at the XY chromatin domain of the pachytene
spermatocytes.
Length = 72
Score = 32.4 bits (74), Expect = 0.045
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 295 QYCRDTNSIPAPP--ELFNQ-KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLN 349
Q+ ++ + P +LF + +I+G+ALL L + G K GP++K+ + I L
Sbjct: 14 QFIKEADPQALAPHVDLFRKHEIDGKALLLLNSDMMMKYMGLKLGPALKLCYHIDKLK 71
>gnl|CDD|188978 cd09579, SAM_Samd7,11, SAM domain of Samd7,11 subfamily of Polycomb
group. SAM (sterile alpha motif) domain is a
protein-protein interaction domain. Phylogenetic
analysis suggests that proteins of this subfamily are
most closely related to SAM-Ph1,2,3 subfamily of
Polycomb group. They are predicted transcriptional
repressors in photoreceptor cells and pinealocytes of
vertebrates. SAM domain containing protein 11 is also
known as Mr-s (major retinal SAM) protein. In mouse, it
is predominantly expressed in developing retinal
photoreceptors and in adult pineal gland. The SAM domain
is involved in homooligomerization of whole proteins (it
was shown based on immunoprecipitation assay and
mutagenesis), however its repression activity is not due
to SAM/SAM interactions but to the C-terminal region.
Length = 68
Score = 30.1 bits (68), Expect = 0.23
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 312 QKINGEALLTLTKEKCFDLTGGKAGPSIKI 341
I+GE L LT+E + G K GP++KI
Sbjct: 29 HSIDGETLPLLTEEHLLNTMGLKLGPALKI 58
>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ). SAM (Sterile
Alpha Motif) domain is a module consisting of
approximately 70 amino acids. This domain is found in
the Fungi/Metazoa group and in a restricted number of
bacteria. Proteins with SAM domains are represented by a
wide variety of domain architectures and have different
intracellular localization, including nucleus, cytoplasm
and membranes. SAM domains have diverse functions. They
can interact with proteins, RNAs and membrane lipids,
contain site of phosphorylation and/or kinase docking
site, and play a role in protein homo and hetero
dimerization/oligomerization in processes ranging from
signal transduction to regulation of transcription.
Mutations in SAM domains have been linked to several
diseases.
Length = 56
Score = 29.5 bits (67), Expect = 0.36
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 312 QKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLI 345
+I+G+ALL LT E +L G KI I
Sbjct: 21 NEIDGDALLLLTDEDLKELGITSPGHRKKILRAI 54
>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus. This family contains the N
terminal region of several LUC7 protein homologues and
only contains eukaryotic proteins. LUC7 has been shown
to be a U1 snRNA associated protein with a role in
splice site recognition. The family also contains human
and mouse LUC7 like (LUC7L) proteins and human cisplatin
resistance-associated overexpressed protein (CROP).
Length = 252
Score = 30.1 bits (68), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 192 KDTDPNVIPIQKDGMAVCEKCGA 214
++ P+ Q+ + VCE CGA
Sbjct: 175 RNAAPSSAQAQQQKLRVCEVCGA 197
>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It has been
suggested that SAM is an evolutionarily conserved
protein binding domain that is involved in the
regulation of numerous developmental processes in
diverse eukaryotes. The SAM domain can potentially
function as a protein interaction module through its
ability to homo- and heterooligomerise with other SAM
domains.
Length = 62
Score = 27.2 bits (61), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
+ F I+G+ALL LT+E L G KI I L
Sbjct: 20 DNFRAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQGL 61
>gnl|CDD|188976 cd09577, SAM_Ph1,2,3, SAM domain of Ph (polyhomeotic) proteins of
Polycomb group. SAM (sterile alpha motif) domain of Ph
(polyhomeotic) proteins of Polycomb group is a
protein-protein interaction domain. Ph1,2,3 proteins are
members of PRC1 complex. This complex is involved in
transcriptional repression of Hox (Homeobox) cluster
genes. It is recruited through methylated H3Lys27 and
supports the repression state by mediating
monoubiquitination of histone H2A. Proteins of the
Ph1,2,3 subfamily contribute to anterior-posterior
neural tissue specification during embryogenesis.
Additionally, the P2 protein of zebrafish is known to be
involved in epiboly and tailbud formation. SAM domains
of Ph proteins may interact with each other, forming
homooligomers, as well as with SAM domains of other
proteins, in particular with the SAM domain of Scm (sex
comb on midleg) proteins, forming heterooligomers.
Homooligomers are similar to the ones formed by SAM
Pointed domains of the TEL proteins. Such SAM/SAM
oligomers apparently play a role in transcriptional
repression through polymerization along the chromosome.
Length = 69
Score = 27.4 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 308 ELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
E Q+I+G+ALL L ++ K GP++KI I L
Sbjct: 27 EFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKICAKINSL 67
>gnl|CDD|117786 pfam09235, Ste50p-SAM, Ste50p, sterile alpha motif. The fungal
Ste50p SAM domain consists of five helices, which form a
compact, globular fold. It is required for mediation of
homodimerisation and heterodimerisation (and in some
cases oligomerisation) of the protein.
Length = 75
Score = 27.5 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 313 KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIV 352
KI G L LT + C +L +IK L TC+NK V
Sbjct: 35 KITGSTLSELTLQDCKELCDDDLSKAIK---LKTCINKFV 71
>gnl|CDD|163573 TIGR03861, phenyl_ABC_PedC, alcohol ABC transporter, permease
protein. Members of this protein family, part of a
larger class of efflux-type ABC transport permease
proteins, are found exclusively in genomic contexts with
pyrroloquinoline-quinone (PQQ) biosynthesis enzymes
and/or PQQ-dependent alcohol dehydrogenases, such as the
phenylethanol dehydrogenase PedE of Pseudomonas putida
U. Members include PedC, an apparent phenylethanol
transport protein whose suggested role is efflux to
limit intracellular concentrations of toxic metabolites
during phenylethanol catalysis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 253
Score = 29.0 bits (65), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 267 IFAPGFCAAHGINLTPPKGYTHATFSWEQY 296
+FA GF AA GI++ P T+ T+ E Y
Sbjct: 35 VFAAGFRAALGISIIEPYD-TYITY--EVY 61
>gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed.
Length = 297
Score = 29.0 bits (65), Expect = 3.7
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 122 DICVATVMKMEGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHH----GPNRKIKPV 177
D+ VA M GYM+ + L M ++ T+ V+ P + I PV
Sbjct: 74 DVLVAESQGMIGYMLAQSLSAQ------PQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPV 127
Query: 178 KHPGLKLQTPIAYQ 191
P + AY
Sbjct: 128 YQPEEQEALEAAYG 141
>gnl|CDD|226133 COG3605, PtsP, Signal transduction protein containing GAF and PtsI
domains [Signal transduction mechanisms].
Length = 756
Score = 28.9 bits (65), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 80 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSD 122
ATE L +V +L+ G G +VG+ S +PLNL+D
Sbjct: 54 ATEGLNKPAVHLV--QLAFGEG-----LVGLVGRSAEPLNLAD 89
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 28.3 bits (64), Expect = 6.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 37 GFCCHQDSP---LIHPVGW----ARRTGHLISAPPLYTDRCAKGIRDRDDATEDL 84
GF SP L P+ W +R + AP D C + +RD A DL
Sbjct: 215 GFPVVLMSPLAFLRRPLRWLEAISRYRATVSGAPNFAYDLCVRRVRDEQLAGLDL 269
>gnl|CDD|220905 pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791).
This is a family of proteins found in archaea and
bacteria. This domain contains a P-loop motif suggesting
it binds to a nucleotide such as ATP.
Length = 417
Score = 27.9 bits (63), Expect = 8.9
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 325 EKCFDLTGGKAG--PSIKIAHLITCLNKIVQNPN 356
+ GG P I + L+ + QNP+
Sbjct: 369 QHVAGRLGGAVFVTPREFIRDFVDVLDILEQNPD 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.428
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,343,952
Number of extensions: 1727807
Number of successful extensions: 1179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 28
Length of query: 358
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 260
Effective length of database: 6,590,910
Effective search space: 1713636600
Effective search space used: 1713636600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)