RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6236
(358 letters)
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin
regulator, DNA-BIN metal-binding, nucleus, repressor,
transcription; HET: MLZ SUC; 2.80A {Drosophila
melanogaster}
Length = 447
Score = 167 bits (425), Expect = 3e-48
Identities = 78/354 (22%), Positives = 126/354 (35%), Gaps = 58/354 (16%)
Query: 1 MNLEVVDKKRISQVK-----------VATIEKIVGKRLQVHYY---DDDDGFCCHQDSPL 46
M +EV + S VATI +I G + + Y D F + +
Sbjct: 41 MKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDSHDFWVNLCNAE 100
Query: 47 IHPVGWARRTGHLISAPPLYTDRC-------AKGIRDRDDATEDLFPLSVGTAGTKLSPG 99
+H VGW G + P + + + +
Sbjct: 101 VHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFY----------NKIN 150
Query: 100 TGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMML-----EELDEGMYYED----PT 150
F +G+ LE VD +S + +ATV K+ G + + + + P
Sbjct: 151 DSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPV 210
Query: 151 GMSKISNTATQP------AVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKD 204
G + + + ++ + + + +
Sbjct: 211 GWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSFVE 270
Query: 205 GMAVCEKCGAMGVKHAFYTRERRFC--SLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
GM K A+ + C ++ VL +MMIR++SY D +G DWFCYH
Sbjct: 271 GM----KLEAVDPLNLS-----SICPATVMAVLKFGYMMIRIDSYQPDASG-SDWFCYHE 320
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQKING 316
SP IF GFC+ + I++TPP GY TF+WE Y DT ++ A LF+ I
Sbjct: 321 KSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLSDTGAVAAGQHLFHDIIPD 374
Score = 164 bits (416), Expect = 6e-47
Identities = 95/296 (32%), Positives = 132/296 (44%), Gaps = 22/296 (7%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLI 60
+NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IHPVGWA GH +
Sbjct: 161 LNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPVGWATTVGHNL 220
Query: 61 SAPPLYTDRCAKGIRDR-----DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESV 115
+AP Y +R G DDAT +LF + G+T FV GMKLE+V
Sbjct: 221 AAPQDYLERMLAGREAMIEVHEDDATIELFKM---NFTFDEYYSDGKTNSFVEGMKLEAV 277
Query: 116 DPLNLSDICVATVMKM--EGYMMLEELDEGMYYEDPTGM--SKISNTATQPAVNSHHGPN 171
DPLNLS IC ATVM + GYMM+ +D + + P N
Sbjct: 278 DPLNLSSICPATVMAVLKFGYMMI-RIDSYQPDASGSDWFCYHEKSPCIFP-AGFCSVNN 335
Query: 172 RKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVK-HAFYTRERRFCS 230
+ P + T Y DT + + +G+ + R
Sbjct: 336 ISVTPPNGYDSRTFTWEGYLSDTGAVAAGQHLFHDIIPDHGFEVGMSLECADLMDPRLVC 395
Query: 231 LAQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPK 284
+A V + R + + + + ++ S I+ G+C L P
Sbjct: 396 VATVARVVGRLLKVHFDGWTDE-----YDQWLDCESADIYPVGWCVLVNHKLEGPP 446
Score = 85.9 bits (212), Expect = 1e-18
Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 41/259 (15%)
Query: 95 KLSPGTGQTGGFVVGMKLESVDP-----------LNLSDICVATVMKMEGYMMLEELDEG 143
+PG VGMK+E + + VAT+++++GY L + G
Sbjct: 26 PHAPGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYE-G 84
Query: 144 MYYED-------------PTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQT-PIA 189
+ G P H + +T P
Sbjct: 85 FDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSN 144
Query: 190 YQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDE 249
+ + ++ + G+ + R ++ +++ DR + + +D
Sbjct: 145 FYNKINDSLQSRFRLGL----NLECVDKDRISQVRL---ATVTKIVGDR---LFLRYFDS 194
Query: 250 DTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPEL 309
D D F H SP I G+ G NL P+ Y + + + + A EL
Sbjct: 195 D-----DGFWCHEDSPIIHPVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIEL 249
Query: 310 FNQKINGEALLTLTKEKCF 328
F + + K F
Sbjct: 250 FKMNFTFDEYYSDGKTNSF 268
Score = 36.6 bits (84), Expect = 0.011
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 290 TFSWEQYCRDTNSIPAPPELFNQ 312
++ W N AP F
Sbjct: 5 SYDWLPRLSKENFNAAPVTCFPH 27
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
regulator, metal-binding, nucleus, transcript
transcription regulation, zinc-finger; HET: MLZ; 2.10A
{Homo sapiens} PDB: 3dbb_A* 3cey_A
Length = 456
Score = 165 bits (419), Expect = 2e-47
Identities = 91/312 (29%), Positives = 134/312 (42%), Gaps = 24/312 (7%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK ++S+ ++A ++ ++G RL++ Y D DD F CH SPLIHPVGW+RR GH
Sbjct: 158 MRLEVVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGH 217
Query: 59 LISAPPLYTDRCAK--GIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVD 116
I +D + DA LF K+ + G F GMKLE++D
Sbjct: 218 GIKMSERRSDMAHHPTFRKIYCDAVPYLFK--------KVRAVYTEGGWFEEGMKLEAID 269
Query: 117 PLNLSDICVATVMKM--EGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKI 174
PLNL +ICVATV K+ +GY+M+ S+ A P + ++
Sbjct: 270 PLNLGNICVATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFP-ATFCQKNDIEL 328
Query: 175 KPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVK-HAFYTRERRFCSLAQ 233
P K + Y + T P + M +G+K A E R +A
Sbjct: 329 TPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMDCPNHGFKVGMKLEAVDLMEPRLICVAT 388
Query: 234 V--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHAT- 290
V + R + I + +D + SP I+ G+C G L PP AT
Sbjct: 389 VKRVVHRLLSIHFDGWDSE-----YDQWVDCESPDIYPVGWCELTGYQLQPPVAAEPATP 443
Query: 291 FSWEQYCRDTNS 302
++ +
Sbjct: 444 LKAKEATKKKKK 455
Score = 160 bits (406), Expect = 2e-45
Identities = 77/334 (23%), Positives = 125/334 (37%), Gaps = 38/334 (11%)
Query: 1 MNLEVVDKKRISQVK---VATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWA 53
M +EV++ + + +A++ + G R+ + Y +++D F C+ + +HP+GW
Sbjct: 45 MKVEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWC 104
Query: 54 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 113
++ P + + + L + F GM+LE
Sbjct: 105 AINSKILVPPRTIHAKFT---DWKGYLMKRLVGSRTLPVDFHIKMVESMKYPFRQGMRLE 161
Query: 114 SVDPLNLSDICVATVMKMEGYMML-------EELDEGMYYED----PTGMSKISNTATQP 162
VD +S +A V + G + + D + P G S+ +
Sbjct: 162 VVDKSQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGHGIKM 221
Query: 163 AVNSHHGPNRKIKPVKHPGLK-LQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAF 221
R+ HP + + + + K A+ +
Sbjct: 222 -------SERRSDMAHHPTFRKIYCDAVPYLFKKVRAVYTEGGWFEEGMKLEAIDPLNLG 274
Query: 222 YTRERRFC--SLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGIN 279
C ++ +VL D ++MI V + GLDWFCYH SS IF FC + I
Sbjct: 275 -----NICVATVCKVLLDGYLMICV--DGGPSTDGLDWFCYHASSHAIFPATFCQKNDIE 327
Query: 280 LTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQK 313
LTPPKGY TF+WE Y T S AP LFN
Sbjct: 328 LTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMD 361
Score = 70.9 bits (173), Expect = 1e-13
Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 36/242 (14%)
Query: 95 KLSPGTGQTGGFVVGMKLESVDPLNLSD---ICVATVMKMEGYMMLEELDEGMYYED--- 148
K P Q + GMK+E ++ + +A+V++ GY +L + + D
Sbjct: 30 KHVPLYDQWEDVMKGMKVEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEG--FENDASH 87
Query: 149 ------------PTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQT-PIAYQKDTD 195
P G I++ P H + + +T P+ +
Sbjct: 88 DFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDWKGYLMKRLVGSRTLPVDFHIKMV 147
Query: 196 PNVIPIQKDGMAVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGL 255
++ + GM + V R + V+ R + + D D
Sbjct: 148 ESMKYPFRQGMRLE-------VVDKSQVSRTRMAVVDTVIGGR-LRLLYEDGDSDD---- 195
Query: 256 DWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQKIN 315
D++C HM SP I G+ G + + + + R P +
Sbjct: 196 DFWC-HMWSPLIHPVGWSRRVGHGIKMSERRSD--MAHHPTFRKIYCDAVPYLFKKVRAV 252
Query: 316 GE 317
Sbjct: 253 YT 254
Score = 37.7 bits (87), Expect = 0.004
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 290 TFSWEQYCRDTNSIPAPPELFNQ 312
F W ++ +D + AP F
Sbjct: 9 GFDWGKFLKDHSYKAAPVSCFKH 31
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics,
structural genomics consortium, metal-binding, nucleus,
zinc-finger; 2.50A {Homo sapiens}
Length = 437
Score = 162 bits (411), Expect = 2e-46
Identities = 78/331 (23%), Positives = 120/331 (36%), Gaps = 40/331 (12%)
Query: 1 MNLEVVDKKRISQVK---VATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWA 53
+ +EV + K +A I K+ G + Y +++D G F C+ IHPVGW
Sbjct: 47 VRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWC 106
Query: 54 RRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 113
+G + P + + + L F M++E
Sbjct: 107 AASGKPLVPPRTIQHKYT---NWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVE 163
Query: 114 SVDPLNLSDICVATVMKMEGYMMLEELDEG--------MYYED----PTGMSKISNTATQ 161
VD +L VA V + G + +E + G S+ +
Sbjct: 164 VVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFK 223
Query: 162 PAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAF 221
+ K TP + + K A+ +
Sbjct: 224 RS-----------DITKKQDGHFDTPPHLFAKVKE--VDQSGEWFKEGMKLEAIDPLNLS 270
Query: 222 YTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLT 281
++ +VL D F+MI ++ + DWFCYH +SP IF GFC + I LT
Sbjct: 271 TIC---VATIRKVLADGFLMIGIDGSEAADGS--DWFCYHATSPSIFPVGFCEINMIELT 325
Query: 282 PPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
PP+GYT F W Y R+T SI AP +LFN+
Sbjct: 326 PPRGYTKLPFKWFDYLRETGSIAAPVKLFNK 356
Score = 155 bits (393), Expect = 1e-43
Identities = 78/308 (25%), Positives = 122/308 (39%), Gaps = 53/308 (17%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG---FCCHQDSPLIHPVGWARRTG 57
M +EVVDK+ + + +VA +E ++G RL++ Y + +D F CH SPLIH +GW+R G
Sbjct: 160 MRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIG 219
Query: 58 HLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDP 117
H + + D LF K+ F GMKLE++DP
Sbjct: 220 HRFKRSDITKKQ-----DGHFDTPPHLF--------AKVKEVDQSGEWFKEGMKLEAIDP 266
Query: 118 LNLSDICVATVMKM--EGYMMLEELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKIK 175
LNLS ICVAT+ K+ +G++M+ +D + S I
Sbjct: 267 LNLSTICVATIRKVLADGFLMI-GIDGSEAADGSDWFCYH--------ATSPS-----IF 312
Query: 176 PVKHP---GLKLQTPIAYQKDTD--PNVIPIQKDGMAVCEKCGAMGVKHAFY-------- 222
PV ++L P Y K + + A + H F
Sbjct: 313 PVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAV 372
Query: 223 -TRERRFCSLAQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGIN 279
E R +A V + R + I + ++E+ + SP ++ G+C G
Sbjct: 373 DLMEPRLICVATVTRIIHRLLRIHFDGWEEEYD-----QWVDCESPDLYPVGWCQLTGYQ 427
Query: 280 LTPPKGYT 287
L PP +
Sbjct: 428 LQPPASQS 435
Score = 84.7 bits (209), Expect = 2e-18
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + VAT+ +I+ + L++H+ ++++ +SP ++PVGW + TG+
Sbjct: 367 MKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGY 426
Query: 59 LISAPPLYTDR 69
+ P + R
Sbjct: 427 QLQPPASQSSR 437
Score = 67.0 bits (163), Expect = 2e-12
Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 43/240 (17%)
Query: 95 KLSPGTGQTGGFVVGMKLESVDP---LNLSDICVATVMKMEGYMMLEELDEGMYYED--- 148
K +P G +++E + L +A ++K+ GY L + + D
Sbjct: 32 KHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEG--FENDSGL 89
Query: 149 ------------PTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQT-PIAYQKDTD 195
P G S P H + +T P + +
Sbjct: 90 DFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVS 149
Query: 196 PNVIPIQKDGMAVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGL 255
++ K M V V + R + V+ R + Y+E +
Sbjct: 150 ESMQYPFKPCMRVE-------VVDKRHLCRTRVAVVESVIGGRLRL----VYEESEDRTD 198
Query: 256 DWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQKIN 315
D F HM SP I G+ + G + PP LF +
Sbjct: 199 D-FWCHMHSPLIHHIGWSRSIGHRFKRSDITKKQDGHF----------DTPPHLFAKVKE 247
Score = 40.0 bits (93), Expect = 8e-04
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 282 PPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
+ FSW Y + I AP F
Sbjct: 3 TKAAVSMEGFSWGNYINSNSFIAAPVTCFKH 33
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
modification, transcription repression, MBT repeat
structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
4fl6_A* 1wjs_A
Length = 324
Score = 158 bits (400), Expect = 9e-46
Identities = 78/316 (24%), Positives = 111/316 (35%), Gaps = 67/316 (21%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVGW +TGH
Sbjct: 41 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGH 100
Query: 59 LISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 113
+ P Y + A + LF + T GF VGMKLE
Sbjct: 101 KLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLF---------ENQNITVIPSGFRVGMKLE 151
Query: 114 SVDPLNLSDICVATVMKMEGYMML-------EELDEGMYYEDPTGMSKISNTATQPAVNS 166
+VD N S ICVATV M L E D P
Sbjct: 152 AVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSP----------------- 194
Query: 167 HHGPNRKIKPV---KHPGLKLQTPIAY--QKDTDPNVIPIQKDGMAVCEKCGAMGVKHAF 221
I PV K L TP Y K + + + + + + H F
Sbjct: 195 ------HIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGF 248
Query: 222 YT---------RERRFCSLAQV--LNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAP 270
R F +A V +D + + + ++ + + SP I
Sbjct: 249 QKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYD-----YWIDADSPDIHPV 303
Query: 271 GFCAAHGINLTPPKGY 286
G+C+ G L PP
Sbjct: 304 GWCSKTGHPLQPPLSP 319
Score = 103 bits (258), Expect = 2e-25
Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 27/232 (11%)
Query: 95 KLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED------ 148
+ GF VGMKLE VDP + S CV TV ++ GY + D D
Sbjct: 26 EHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNAD 85
Query: 149 -----PTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQ- 202
P G + + P +K P + ++ + VIP
Sbjct: 86 ALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCK-AQAAPKSLFENQNITVIPSGF 144
Query: 203 KDGMAVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHM 262
+ GM + E ++ ++++RF+ + +++DE D++C
Sbjct: 145 RVGMKL-E------AVDKKNPSFICVATVTDMVDNRFL-VHFDNWDESY----DYWC-EA 191
Query: 263 SSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQK 313
SSP+I G+C H L P GY + FSW++Y +TNS+PAP F K
Sbjct: 192 SSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVK 243
Score = 85.8 bits (212), Expect = 5e-19
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW +TGH
Sbjct: 252 MKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGH 311
Query: 59 LISAPPLYTDRC 70
+ P +
Sbjct: 312 PLQPPLSPLELM 323
Score = 36.1 bits (83), Expect = 0.013
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 290 TFSWEQYCRDTNSIPAPPELFNQ 312
+ W Y + ++ P +LF +
Sbjct: 4 AWCWASYLEEEKAVAVPAKLFKE 26
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller,
transcription repressor, three malignant brain TU
repeats, transcription; HET: MES; 1.55A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A*
3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A*
3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A*
2ri2_A* 2ri5_A*
Length = 331
Score = 152 bits (384), Expect = 2e-43
Identities = 71/311 (22%), Positives = 111/311 (35%), Gaps = 44/311 (14%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 46 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 105
Query: 59 LISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLE 113
+ P Y + + A + LF + GF VGMKLE
Sbjct: 106 KLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLF---------VSQSHSPPPLGFQVGMKLE 156
Query: 114 SVDPLNLSDICVATVMKMEGYMML-------EELDEGMYYEDP----TGMSKISNTATQP 162
+VD +N S +CVA+V + L + D P G + P
Sbjct: 157 AVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTP 216
Query: 163 AVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGAMGVKHAFY 222
+ N + P K P+ + M K A+ +
Sbjct: 217 PQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLV---NM----KLEAVDRR---N 266
Query: 223 TRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTP 282
R S+ V D + I + + + F P I G+C+ G L P
Sbjct: 267 PALIRVASVEDVE-DHRIKIHFDGWSHGYD-----FWIDADHPDIHPAGWCSKTGHPLQP 320
Query: 283 PKGYTH-ATFS 292
P G ++ S
Sbjct: 321 PLGPREPSSAS 331
Score = 96.3 bits (239), Expect = 9e-23
Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 25/228 (10%)
Query: 98 PGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED--------- 148
T GF +GMKLE +DP + S + TV ++ GY + D D
Sbjct: 34 AVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPD 93
Query: 149 --PTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGM 206
P G + + QP + ++ + + + + GM
Sbjct: 94 IHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGM 153
Query: 207 AVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPY 266
+ E S+ V++ RF+ + +++D+ D++C SSPY
Sbjct: 154 KL-E------AVDRMNPSLVCVASVTDVVDSRFL-VHFDNWDD----TYDYWC-DPSSPY 200
Query: 267 IFAPGFCAAHGINLTPPKGYTHA-TFSWEQYCRDTNSIPAPPELFNQK 313
I G+C G LTPP+ Y F WE+Y +T + P F +
Sbjct: 201 IHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVR 248
Score = 45.4 bits (107), Expect = 1e-05
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 282 PPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
P G +SWE Y + +I AP LF
Sbjct: 1 PATGEKKECWSWESYLEEQKAITAPVSLFQD 31
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant
brain tumor, transcription factor; 1.7A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Length = 243
Score = 118 bits (298), Expect = 1e-31
Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + V +AT+ I G RL++ D+ + F DSP I PVG + G
Sbjct: 67 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGD 126
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
L+ P Y + S + P F VGMKLE++D
Sbjct: 127 LLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKE--PPKPPLNNFKVGMKLEAIDKK 184
Query: 119 NLSDICVATVMKMEGYMML-------EELDEGMYYEDP 149
N IC AT+ ++G + D Y+
Sbjct: 185 NPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSR 222
Score = 79.2 bits (195), Expect = 3e-17
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +DKK + ATI + G + + + + + C DS I P GW R TG
Sbjct: 176 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGD 235
Query: 59 LISAP 63
++ P
Sbjct: 236 VLQPP 240
Score = 77.7 bits (191), Expect = 1e-16
Identities = 51/280 (18%), Positives = 79/280 (28%), Gaps = 70/280 (25%)
Query: 37 GFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRD---------RDDATEDLFPL 87
G ++DS + + P T + A + F
Sbjct: 2 GQTVNEDSMDVKKENQEKT-------PQSSTSSVQRDDFHWEEYLKETGSISAPSECFR- 53
Query: 88 SVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYE 147
F VGMKLE+ DP N + +C+ATV+ + G + LD
Sbjct: 54 ---------QSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGS---- 100
Query: 148 DPTGMSKISNTATQPA-VNSHHGPNRKIKPV---KHPGLKLQTPIAYQKD---------- 193
N V+S I+PV + G LQ P+ YQ +
Sbjct: 101 --------DNRNDFWRLVDSPD-----IQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLK 147
Query: 194 TDPNVIPIQKDGMAVCEKCGAMGVKH------AFYTRERRFCSLAQVLN--DRFMMIRVN 245
T + A + A + + + I +
Sbjct: 148 TLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFD 207
Query: 246 SYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKG 285
+ D++C S IF G+C G L PP
Sbjct: 208 GWSGA----FDYWC-KYDSRDIFPAGWCRLTGDVLQPPGT 242
Score = 69.2 bits (169), Expect = 1e-13
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 229 CSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTH 288
++ + R + +R++ D + F + SP I G C G L PP GY
Sbjct: 83 ATVIGITGAR-LRLRLDGSDNR-----NDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQM 136
Query: 289 ATFSWEQYCRDT--NSIPAPPELFNQ 312
T SW + T S A LF +
Sbjct: 137 NTSSWPMFLLKTLNGSEMASATLFKK 162
Score = 45.0 bits (106), Expect = 1e-05
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 264 SPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
S + + F WE+Y ++T SI AP E F Q
Sbjct: 9 SMDVKKEN---QEKTPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQ 54
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 116 bits (293), Expect = 7e-31
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + ++ +AT+ ++G RL++ D + F DS IH +G + G
Sbjct: 39 MKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGG 98
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPL 118
++ P + + + + P + F VG KLE+VD
Sbjct: 99 MLQPPLGFCMNASSWPGYLCKILNNAMVAPEEIFQPE--PPEPEENLFKVGQKLEAVDKK 156
Query: 119 NLSDICVATVMKMEGYMMLEELD 141
N IC ATV ++ + D
Sbjct: 157 NPQLICCATVDAIKDDQIHVTFD 179
Score = 83.9 bits (207), Expect = 1e-18
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
LE VDKK + AT++ I ++ V + + + C+ S I P GW R+ H
Sbjct: 148 QKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCH 207
Query: 59 LISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMK 111
+ P + + + R + P + T F K
Sbjct: 208 PMQPPGHKSRMDSSSSKQRCPRPRYTVV----AESEAMVPASPATAHFHPNCK 256
Score = 79.6 bits (196), Expect = 3e-17
Identities = 38/221 (17%), Positives = 70/221 (31%), Gaps = 26/221 (11%)
Query: 105 GFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELDEGMYYED-----------PTGMS 153
F +GMKLE++DP N++ C+ATV+ + G + LD D G
Sbjct: 34 DFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHC 93
Query: 154 KISNTATQPAVNSHHGPNRKIKPVKHPGLKLQT-PIAYQKDTDPNVIPIQ-KDGMAVCEK 211
+ + QP + + + P + P K G K
Sbjct: 94 EKNGGMLQPPLGFCMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQ----K 149
Query: 212 CGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPG 271
A+ K+ ++ + +D+ + + + + + + S IF G
Sbjct: 150 LEAVDKKNPQLICC---ATVDAIKDDQ-IHVTFDGWRGA-----FDYWCNYRSRDIFPAG 200
Query: 272 FCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
+CA + PP + S + E
Sbjct: 201 WCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAM 241
Score = 36.9 bits (85), Expect = 0.006
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 290 TFSWEQYCRDTNSIPAPPELFNQ 312
F W+ Y +T S AP + F Q
Sbjct: 4 AFDWDAYLEETGSEAAPAKCFKQ 26
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Length = 107
Score = 85.3 bits (211), Expect = 9e-21
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW +TGH
Sbjct: 18 MKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGH 77
Query: 59 LISAPPLYTDRCAK 72
+ P +
Sbjct: 78 PLQPPLSPLELMEA 91
Score = 49.0 bits (117), Expect = 8e-08
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 105 GFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
GF MKLE VD N I VATV + + + D
Sbjct: 13 GFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFD 49
Score = 40.6 bits (95), Expect = 7e-05
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 237 DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQ 295
D + + + ++ + + SP I G+C+ G L PP + E
Sbjct: 41 DHRVKVHFDGWNNCYD-----YWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEH 94
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Length = 127
Score = 71.9 bits (176), Expect = 1e-15
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWARRT 56
+E+ D + Q + ++ + VG RL++ Y +D + + PVGW +
Sbjct: 16 SLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQEN 75
Query: 57 GHLISAPPLYTDR 69
+ + P
Sbjct: 76 KYRMDPPSEIYPL 88
Score = 58.0 bits (140), Expect = 1e-10
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 237 DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY--THATFSWE 294
+ +R ++ + D + + G+C + + PP W+
Sbjct: 39 GGRLRLRYVGLEDTES--YDQWL-FYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWK 95
Query: 295 QYCR----DTNSIPAPPELFNQK 313
D P P E+F
Sbjct: 96 CTLEKSLIDAAKFPLPMEVFKDH 118
Score = 48.0 bits (114), Expect = 2e-07
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 105 GFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
VG +E D N + +V++ G +
Sbjct: 11 LITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYV 47
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2,
nucleus, zinc-finger, RNA binding, MBT repeats, PCG
proteins, polymorphism; NMR {Homo sapiens}
Length = 43
Score = 54.0 bits (129), Expect = 4e-10
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 205 GMAVCEKCGAMGVKHAFYTRERRFCSLA 232
AVCE CG +G + AF+++ +RFCS++
Sbjct: 5 EPAVCEMCGIVGTREAFFSKTKRFCSVS 32
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 38.7 bits (90), Expect = 2e-04
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 308 ELFNQK-INGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNPN 356
+LF + I+G+ALL L E+ G K GP++KI +L+ +N + +
Sbjct: 38 DLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGRDHHHH 87
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 37.9 bits (88), Expect = 4e-04
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 308 ELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNPNRN 358
+ Q+I+G+ALL L ++ + G K GP++KI + + K V++ + +
Sbjct: 38 DFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESI-KEVRDHHHH 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 65 LY-TDRCAKGIRDR-DDATEDLFPLSVGTAGTKLSPG--TGQTGGFVVGMKLESVDPLNL 120
LY T + A+ + +R D+ +D + S+ +P T GG G ++ N
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGG-EKGKRIRE----NY 1688
Query: 121 SDICVATVM--KMEGYMMLEELDE---GMYYEDPTGMSKISNTA-TQPAV 164
S + T++ K++ + +E++E + G +S T TQPA+
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--LLSATQFTQPAL 1736
Score = 28.9 bits (64), Expect = 3.3
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 29/111 (26%)
Query: 3 LEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDG--FCCHQDS------PLI--HPVGW 52
L + + K +Q+ YD DG S I PV W
Sbjct: 432 LVPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 53 ARRTG----HLISAPPLYTDRCAK---------GIR-----DRDDATEDLF 85
T H++ P G+R D +D +
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 28.9 bits (64), Expect = 3.5
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 22/102 (21%)
Query: 44 SPLIHPVGWARRTGHLISAPPLYTDRCAKGI------RDRDDATEDLF----PLSVGTAG 93
LI A LI +G+ + + + + P+S
Sbjct: 185 GDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---- 238
Query: 94 TKLSPGTG--QTGGFVVGMKLESVDPLNLSDICVATVMKMEG 133
P G Q +VV KL P L +G
Sbjct: 239 ----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo
sapiens} PDB: 3q1j_A
Length = 69
Score = 34.4 bits (79), Expect = 0.005
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGF--CCHQDSPLIHPV 50
LE D+ + ++ +H+ + + DSP + P+
Sbjct: 17 AQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPL 68
Score = 28.3 bits (63), Expect = 0.66
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 95 KLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMML 137
+ P + F VG +LE+ D L + E +L
Sbjct: 2 HMHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVL 44
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2jtf_A
Length = 88
Score = 34.6 bits (79), Expect = 0.007
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGF--CCHQDSPLIHPVGW 52
LE +D + ++ VH+ + + DS + P+
Sbjct: 24 ARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER 77
Score = 30.4 bits (68), Expect = 0.18
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 88 SVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEG 133
S G++G P F +G +LE++D L + + K++
Sbjct: 2 SSGSSGMSKKPPNRPGITFEIGARLEALDYLQ--KWYPSRIEKIDY 45
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 31.5 bits (71), Expect = 0.091
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 293 WEQYCRDTNSIPAPPELFNQ-KINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W Y + N A F++ ++G L E L G G A L
Sbjct: 35 WISYQVEKNKYDASAIDFSRCDMDGATLCNCALE-ELRLVFGPLG-DQLHAQL 85
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo
sapiens}
Length = 49
Score = 30.1 bits (67), Expect = 0.093
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 195 DPNVIPIQKDGMAVCEKCGAMGVKHAFYTRERRFCSLA 232
P+ +K + CE CG F +RFCS+
Sbjct: 7 SPSAELDKKANLLKCEYCGKYAPAEQF-RGSKRFCSMT 43
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 30.1 bits (68), Expect = 0.20
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNP 355
+ F +KI+G+ LL +T ++ DL + G I + L + P
Sbjct: 32 KNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGP 80
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 30.0 bits (68), Expect = 0.23
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNPNRN 358
++F I G LL L + DL K G +I I L++ ++ + +
Sbjct: 29 DIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSSRHHHHH 80
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 29.3 bits (65), Expect = 0.47
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 309 LFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKI 351
L I G+ L L + C DL G +IK +NK+
Sbjct: 37 LRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFK---ILINKM 76
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 29.6 bits (66), Expect = 0.48
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 292 SWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W ++ +P L Q I+G+ L +TK+ LT I ++HL
Sbjct: 37 QWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNA-DILLSHL 88
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 28.9 bits (65), Expect = 0.55
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
+ F +KI+G+ LL +T ++ DL + G I + L
Sbjct: 28 KNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLL 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.61
Identities = 24/221 (10%), Positives = 58/221 (26%), Gaps = 73/221 (33%)
Query: 78 DDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMML 137
D + L + L ++ + +P LS I +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR------------EVLTTNPRRLSII---------AESIR 338
Query: 138 EELDEGMYYEDPTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPN 197
+ L ++ T + ++N ++P ++ + + + +
Sbjct: 339 DGLATWDNWKHVNCDKL--TTIIESSLNV-------LEPAEYRKMFDRLSV-FPPSAH-- 386
Query: 198 VIPIQ-----------KDGMAVCEKCGAMG-VK----------HAFYTRERRFCSLAQVL 235
IP D M V K V+ + Y + L
Sbjct: 387 -IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 236 NDRFMMIRVNSYDE----DTNGGLD------WFC---YHMS 263
+ V+ Y+ D++ + ++ +H+
Sbjct: 446 HRSI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 28.5 bits (64), Expect = 0.72
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNPNR 357
+ F + +I G L LTKE +L + G I + L+ ++ +
Sbjct: 24 DRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGSRRHHHH 74
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 27.9 bits (62), Expect = 1.8
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 312 QKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNKIVQNP 355
+I G L L + + +L G K+ I L +I +
Sbjct: 56 NEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDT 99
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 29.6 bits (66), Expect = 1.9
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 155 ISNTATQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPIQKDGMAVCEKCGA 214
+ + ++N H RKI P + L +P D N + I +A E
Sbjct: 15 VPRGSHMASMNRHFNATRKIDPSRGATLGDGSP------NDMNRVEIGPTQLAFAEW-HT 67
Query: 215 MGVKHAFYTRERR 227
+ RR
Sbjct: 68 ARLDLPDLAAMRR 80
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
F Q I+GE LL L K L + + + +
Sbjct: 26 SEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (61), Expect = 1.9
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 292 SWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W ++ S+ F Q ++G+ L + KE T + ++HL
Sbjct: 34 QWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNT-EVLLSHL 85
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 128
Score = 28.2 bits (62), Expect = 2.3
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 292 SWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W ++ S+ F Q ++G+ L + KE T + ++HL
Sbjct: 48 QWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNT-EVLLSHL 99
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 2.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 192 KDTDPNVIPIQKDGMAVCEKCG 213
K P ++ +G VC CG
Sbjct: 28 KVYPPKIVERFSEGDVVCALCG 49
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 27.1 bits (60), Expect = 2.9
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 292 SWEQYCRDTNSIPAPPELFNQ-KINGEALLTLTKE 325
W + + EL + +NG+AL ++ +
Sbjct: 21 KWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLD 55
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 28.0 bits (62), Expect = 5.8
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 142 EGMYYEDPTGMSKISNTATQPAVNSHHGPNRKIKPVKHPGLKLQTPIAYQKDTDPNVIPI 201
G Y E T ++ + T P + +H Q P+ Y T+ P+
Sbjct: 544 PGFYVEQQTDKNESACPPTIPVLYIYHRSV-------------QCPVLYGSLTETPTGPV 590
Query: 202 QKDGMAVCEK 211
+A+ EK
Sbjct: 591 ASKVLALYEK 600
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.9 bits (63), Expect = 6.0
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 99 GTGQTGGFVVGMKLESVDP 117
GTG+T F + M L VD
Sbjct: 168 GTGKTAAFALTM-LSRVDA 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.428
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,729,123
Number of extensions: 344901
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 84
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)