RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6236
(358 letters)
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 86.4 bits (214), Expect = 1e-21
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD++ + ++VA++E + R+++H+ + F D P IHP GW +TGH
Sbjct: 32 MKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGH 91
Query: 59 LISAPPLYTD 68
+ P +
Sbjct: 92 PLQPPLGPRE 101
Score = 54.1 bits (130), Expect = 5e-10
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY 286
R S+ V + R + I + + F P I G+C+ G L PP G
Sbjct: 46 RVASVEDVEDHR-IKIHFDGWSHG-----YDFWIDADHPDIHPAGWCSKTGHPLQPPLGP 99
Query: 287 THA-TFS 292
+ S
Sbjct: 100 REPSSAS 106
Score = 49.5 bits (118), Expect = 2e-08
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 104 GGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
F+V MKLE+VD N + I VA+V +E + + D
Sbjct: 26 HSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFD 63
Score = 37.1 bits (86), Expect = 4e-04
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQK 313
F WE+Y +T + P F +
Sbjct: 1 FCWEKYLEETGASAVPTWAFKVR 23
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 84.5 bits (209), Expect = 6e-21
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +D + S + T+ ++ G RL++H+ Y + F + +SP IHP GW +TGH
Sbjct: 39 MKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGH 98
Query: 59 LISAPPLYTDR 69
+ P Y +
Sbjct: 99 KLQPPKGYKEE 109
Score = 53.3 bits (128), Expect = 1e-09
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 80 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEE 139
A LF T GF +GMKLE +DP + S + TV ++ GY +
Sbjct: 17 APVSLF--------QDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLH 68
Query: 140 LD 141
D
Sbjct: 69 FD 70
Score = 52.2 bits (125), Expect = 2e-09
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY 286
++A+V R + + + Y E + F + +SP I G+ G L PPKGY
Sbjct: 53 FILTVAEVCGYR-LRLHFDGYSECHD-----FWVNANSPDIHPAGWFEKTGHKLQPPKGY 106
Query: 287 TH 288
Sbjct: 107 KE 108
Score = 36.4 bits (84), Expect = 8e-04
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 290 TFSWEQYCRDTNSIPAPPELFNQ 312
+SWE Y + +I AP LF
Sbjct: 2 CWSWESYLEEQKAITAPVSLFQD 24
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 83.8 bits (207), Expect = 9e-21
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE +DKK + ATI + G + + + + + C DS I P GW R TG
Sbjct: 37 MKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGD 96
Query: 59 LISAP 63
++ P
Sbjct: 97 VLQPP 101
Score = 53.7 bits (129), Expect = 7e-10
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 80 ATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEE 139
A+ LF K P F VGMKLE++D N IC AT+ ++G +
Sbjct: 16 ASATLF---------KKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHIT 66
Query: 140 LD 141
D
Sbjct: 67 FD 68
Score = 51.0 bits (122), Expect = 6e-09
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKG 285
++ V D + I + + + S IF G+C G L PP
Sbjct: 51 CPATIGDVKGDE-VHITFDGWSGA-----FDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 103
Score = 27.9 bits (62), Expect = 0.80
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 292 SWEQYCRDT--NSIPAPPELFNQK 313
SW + +T S A LF ++
Sbjct: 1 SWPMFLLETLNGSEMASATLFKKE 24
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 83.4 bits (206), Expect = 1e-20
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LEVVDK+ ++VAT+ R++VH+ +++ + DSP IHPVGW +TGH
Sbjct: 18 MKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGH 77
Query: 59 LISAPPLYTD 68
+ P +
Sbjct: 78 PLQPPLSPLE 87
Score = 52.2 bits (125), Expect = 2e-09
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 93 GTKLSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
G+ S G GF MKLE VD N I VATV + + + D
Sbjct: 1 GSSGSSGVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFD 49
Score = 51.0 bits (122), Expect = 5e-09
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 237 DRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGYTHA-TFSWEQ 295
D + + + ++ + SP I G+C+ G L PP S
Sbjct: 41 DHRVKVHFDGWNNC-----YDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHG 95
Query: 296 YCR 298
C
Sbjct: 96 GCS 98
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 82.2 bits (203), Expect = 4e-20
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE D + + V +AT+ I G RL++ D+ + F DSP I PVG + G
Sbjct: 35 MKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGD 94
Query: 59 LISAPPLY 66
L+ P Y
Sbjct: 95 LLQPPLGY 102
Score = 52.9 bits (127), Expect = 1e-09
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 105 GFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
F VGMKLE+ DP N + +C+ATV+ + G + LD
Sbjct: 30 DFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLD 66
Score = 51.4 bits (123), Expect = 4e-09
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY 286
++ + R + +R++ D + F + SP I G C G L PP GY
Sbjct: 49 CIATVIGITGAR-LRLRLDGSDNR-----NDFWRLVDSPDIQPVGTCEKEGDLLQPPLGY 102
Score = 36.8 bits (85), Expect = 5e-04
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQ 312
F WE+Y ++T SI AP E F Q
Sbjct: 1 FHWEEYLKETGSISAPSECFRQ 22
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 81.9 bits (202), Expect = 5e-20
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD+ S V VA++ +V R VH+ +DD + C SP IHPVGW ++ G
Sbjct: 36 MKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGK 95
Query: 59 LISAPPLYTDR 69
++ P Y D
Sbjct: 96 PLTPPQDYPDP 106
Score = 50.3 bits (120), Expect = 9e-09
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY 286
S+ V++ R ++ +++D+ + + SSPYI G+C G LTPP+ Y
Sbjct: 50 CVASVTDVVDSR-FLVHFDNWDDTYD-----YWCDPSSPYIHPVGWCQKQGKPLTPPQDY 103
Score = 46.4 bits (110), Expect = 3e-07
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 98 PGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
+ GF VGMKLE+VD +N S +CVA+V + L D
Sbjct: 24 SHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFD 67
Score = 36.8 bits (85), Expect = 6e-04
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 291 FSWEQYCRDTNSIPAPPELFNQK 313
FSW QY R T + AP LF +
Sbjct: 1 FSWSQYLRSTRAQAAPKHLFVSQ 23
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2,
SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 81.9 bits (202), Expect = 9e-20
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDG--FCCHQDSPLIHPVGWARRT 56
+E+ D + Q + ++ + VG RL++ Y +D + + PVGW +
Sbjct: 16 SLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQEN 75
Query: 57 GHLISAPPLYTDRC 70
+ + P
Sbjct: 76 KYRMDPPSEIYPLK 89
Score = 75.0 bits (184), Expect = 3e-17
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 227 RFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCAAHGINLTPPKGY 286
S+ + + R + +R ++ + + G+C + + PP
Sbjct: 30 WIVSVIENVGGR-LRLRYVGLEDTES---YDQWLFYLDYRLRPVGWCQENKYRMDPPSEI 85
Query: 287 THA--TFSWEQYCRDTNS----IPAPPELF 310
W+ + P P E+F
Sbjct: 86 YPLKMASEWKCTLEKSLIDAAKFPLPMEVF 115
Score = 50.7 bits (121), Expect = 1e-08
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 96 LSPGTGQTGGFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
S +G VG +E D N + +V++ G +
Sbjct: 2 SSGSSGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYV 47
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 81.5 bits (201), Expect = 1e-19
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 MNLEVVDKKRISQVKVATIEKIVGKRLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGH 58
M LE VD + S V T+ ++ G R+++H+ Y D F + D+ IHPVGW +TGH
Sbjct: 18 MKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGH 77
Query: 59 LISAPPLYTDR 69
+ P Y +
Sbjct: 78 KLHPPKGYKEE 88
Score = 80.7 bits (199), Expect = 3e-19
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 200 PIQKDGMAVCEKCGAMGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFC 259
P K+G V K + +H ++A+V R + + + Y + F
Sbjct: 8 PYNKNGFKVGMKLEGVDPEHQSVYC---VLTVAEVCGYR-IKLHFDGYSDC-----YDFW 58
Query: 260 YHMSSPYIFAPGFCAAHGINLTPPKGYTHATFSWEQYCRDTNSIPAPPELFNQ 312
+ + I G+C G L PPKGY F+W+ Y + + AP LF
Sbjct: 59 VNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFEN 111
Score = 51.8 bits (124), Expect = 5e-09
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 105 GFVVGMKLESVDPLNLSDICVATVMKMEGYMMLEELD 141
GF VGMKLE VDP + S CV TV ++ GY + D
Sbjct: 13 GFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFD 49
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId:
7227]}
Length = 70
Score = 31.7 bits (72), Expect = 0.014
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 311 NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
Q+I+G+ALL L ++ + G K GP++KI + +
Sbjct: 32 QQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESI 69
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 70
Score = 31.0 bits (70), Expect = 0.034
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 295 QYCRDTNSIPAPPELFNQ----KINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCLNK 350
+C T + L + I G+ L L + C DL G +IK +NK
Sbjct: 10 TWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIK---FKILINK 66
Query: 351 IV 352
+
Sbjct: 67 MR 68
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 29.2 bits (65), Expect = 0.15
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 311 NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
+ ++ G+ LL L + L G I + L
Sbjct: 30 DWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQL 67
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 28.8 bits (64), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 308 ELF-NQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
+LF +I+G+ALL L E G K GP++KI +L+ +
Sbjct: 22 DLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNKV 63
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3
(Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 28.3 bits (63), Expect = 0.23
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 307 PELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHLITCL 348
+ +I G L LTKE +L + G I + L
Sbjct: 23 DRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQL 64
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 26.2 bits (58), Expect = 2.5
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 72 KGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDI 123
K I RD++ G L G + G+ +++ + + L +
Sbjct: 21 KTITIRDESESHFKT------GDVLRVGRFEDDGYFCTIEVTATSTVTLDTL 66
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 25.6 bits (56), Expect = 4.1
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 292 SWEQYCRDTNSIPAPPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W ++ +P L Q I+G+ L +TK+ LT I ++HL
Sbjct: 37 QWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNA-DILLSHL 88
>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase
(metapyrocatechase) {Pseudomonas putida, mt2 [TaxId:
303]}
Length = 162
Score = 26.4 bits (57), Expect = 4.2
Identities = 7/85 (8%), Positives = 17/85 (20%)
Query: 215 MGVKHAFYTRERRFCSLAQVLNDRFMMIRVNSYDEDTNGGLDWFCYHMSSPYIFAPGFCA 274
+ + L+ + + + E F + A +
Sbjct: 29 FYLAEQVLDENGTRVAQFLSLSTKAHDVAFIHHPEKGRLHHVSFHLETWEDLLRAADLIS 88
Query: 275 AHGINLTPPKGYTHATFSWEQYCRD 299
++ T Y D
Sbjct: 89 MTDTSIDIGPTRHGLTHGKTIYFFD 113
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 25.6 bits (56), Expect = 4.3
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 293 WEQYCRDTNSIPA-PPELFNQKINGEALLTLTKEKCFDLTGGKAGPSIKIAHL 344
W + + S+ + F ++G AL L KE +L G I HL
Sbjct: 52 WVMWAVNEFSLKGVDFQKFC--MSGAALCALGKECFLELAPDFVG-DILWEHL 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.428
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,424,740
Number of extensions: 68238
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 40
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)