BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6239
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 98.2 bits (243), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD--HC 58
+SA+++ +++ +R+ +Y F W+ L GD G LQY+H RL S+ + + I +
Sbjct: 455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINA 514
Query: 59 DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
D LL EP A LI + ++ +VL A ++++ + VV YLF LT+ ++ L V G
Sbjct: 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQT 574
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
++ RL L+ AR VL GM +LGL P+++M
Sbjct: 575 EELATARLALYGAARQVLYNGMRLLGLTPVERM 607
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 5 IVYNL-KIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLL 63
I YNL K K F W++ L+ G+ +QY+H R S+ ++ A + DP+ L
Sbjct: 476 IRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRK--AEEEGIKVDPETL 533
Query: 64 AEPVAL--------QLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVK 115
+ +L++ +++F ++ QA + ++ + L + NK V
Sbjct: 534 FKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVL 593
Query: 116 GTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
E V + RLLL VL + ++G++ ++M
Sbjct: 594 KAEEGVREARLLLVMAVEQVLKNALYLMGIEAPERM 629
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 15 KSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILD 74
K +F + E L GD G +QY+H R S+ ++ PD A P L LD
Sbjct: 453 KQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQ----ATPYERALALD 508
Query: 75 IARFDEVLYQAHESYDSSIVVRYLFNLTNSIN 106
+ F+E + +A E ++ +YL +L S N
Sbjct: 509 LLDFEEAVLEAAEERTPHVLAQYLLDLAASWN 540
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 23 ECLHMSGDGGVKLQYSHCRLVSLAQECNAIQP--PDHCD----PKLLAEPVALQLILDIA 76
+ LH SG V + ++ LVSLA+EC I+P D D K L + L+++ A
Sbjct: 25 KALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA 84
Query: 77 RF---DEVLYQAHESYDSSIVV--RYLFNLTNSINKALKQLQVKGTEYHVSQ 123
L E++D S V R +F ++ + + + V G+ +VS
Sbjct: 85 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 43 VSLAQECNAIQPPDHCDPKLLAE--PVALQLILDIARFDEVLYQAHESYDSSIV 94
VS ++ NA++PP + DP+LLA P ++ + E LY+ + SSI+
Sbjct: 5 VSKKKKKNAMRPPGYEDPELLASVTPFTVEEV-------EALYELFKKLSSSII 51
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed
With Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed
With Calcium(Ii) Ion
Length = 222
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 43 VSLAQECNAIQPPDHCDPKLLAE--PVALQLILDIARFDEVLYQAHESYDSSIV 94
VS ++ NA++PP + DP+LLA P ++ + E LY+ + SSI+
Sbjct: 5 VSKKKKKNAMRPPGYEDPELLASVTPFTVEEV-------EALYELFKKLSSSII 51
>pdb|1ZL0|A Chain A, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
pdb|1ZL0|B Chain B, Structure Of Protein Of Unknown Function Pa5198 From
Pseudomonas Aeruginosa
Length = 311
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 102 TNSINKALKQLQVKGTEYHVSQH 124
T+ + L+QL+V G +YH+ +H
Sbjct: 31 TDVLEATLRQLEVHGVDYHLGRH 53
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 14 LKSYNFNWDECLHMSGDGG----VKLQYSHCRLVSLAQECNAIQPPDHCDPKL------- 62
LK+ N+N CLH++ G V+L LVSL + NA +P C+ +
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVEL------LVSLGADVNAQEP---CNGRTALHLAVD 157
Query: 63 LAEPVALQLILDI-ARFDEVLYQAHESY 89
L P + L+L A + V YQ + Y
Sbjct: 158 LQNPDLVSLLLKCGADVNRVTYQGYSPY 185
>pdb|2AUN|A Chain A, Active Site His285ala Mutant Of Ld-Carboxypeptidase
pdb|2AUN|B Chain B, Active Site His285ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 102 TNSINKALKQLQVKGTEYHVSQH 124
T + L+QL+V G +YH+ +H
Sbjct: 39 TEVLEATLRQLEVHGVDYHLGRH 61
>pdb|2AUM|A Chain A, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
pdb|2AUM|B Chain B, Active Site Ser115ala Mutant Of Ld-Carboxypeptidase
Length = 317
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 102 TNSINKALKQLQVKGTEYHVSQH 124
T + L+QL+V G +YH+ +H
Sbjct: 39 TEVLEATLRQLEVHGVDYHLGRH 61
>pdb|1ZRS|A Chain A, Wild-Type Ld-Carboxypeptidase
pdb|1ZRS|B Chain B, Wild-Type Ld-Carboxypeptidase
Length = 317
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 102 TNSINKALKQLQVKGTEYHVSQH 124
T + L+QL+V G +YH+ +H
Sbjct: 39 TEVLEATLRQLEVHGVDYHLGRH 61
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 14 LKSYNFNWDECLHMSGDGG----VKLQYSHCRLVSLAQECNAIQPPDHCDPKL------- 62
LK+ N+N CLH++ G V+L LVSL + NA +P C+ +
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVEL------LVSLGADVNAQEP---CNGRTALHLAVD 160
Query: 63 LAEPVALQLILDI-ARFDEVLYQAHESY 89
L P + L+L A + V YQ + Y
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPY 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,219,709
Number of Sequences: 62578
Number of extensions: 148358
Number of successful extensions: 419
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 13
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)