BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6239
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q558Z0|SYRC_DICDI Probable arginine--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=argS1 PE=3 SV=1
Length = 589
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+SA+++ + +R K Y+FNWD L GD G LQY+H RL SL ++ P+ +
Sbjct: 440 LSAVVIQDFNAKRNKDYDFNWDRMLKSDGDTGPYLQYAHARLCSLERKSGFEFNPN-ANL 498
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
LL+EP A L + I R+ E++ H + S +V YLF L ++++ A + L +K E
Sbjct: 499 SLLSEPEAFNLAITIGRYPEIIQLTHNQLEPSTLVGYLFELAHAVSSAHQVLWIKDREKD 558
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V++ R +L+ A+++L G+ +LGL PL++M
Sbjct: 559 VAEARFVLYWAAKVILGSGLRILGLVPLERM 589
>sp|Q6GQJ7|SYRM_XENLA Probable arginine--tRNA ligase, mitochondrial OS=Xenopus laevis
GN=rars2 PE=2 SV=1
Length = 580
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 7/154 (4%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSL-AQECNAIQPPDHCD 59
++ALIV + K + + Y+F+WD+ L +GD GV LQY+H RL SL A C P D D
Sbjct: 431 IAALIVQDFKGQLVSDYHFDWDQALQSTGDTGVFLQYTHARLHSLQALRC----PRDTED 486
Query: 60 PKL--LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGT 117
++ L EP + + + R+DEV+Y+ E +V YL +L + N A + LQVKG+
Sbjct: 487 FEIASLREPCVIATLQHLLRYDEVIYKCLEDLQPRYLVTYLLSLGHLANVAHRTLQVKGS 546
Query: 118 EYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RLL F ++VL GM +LG+ P++ M
Sbjct: 547 SSEAAHARLLFFKNVQMVLGNGMKLLGITPVNNM 580
>sp|P38714|SYRM_YEAST Arginine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSR1 PE=3 SV=3
Length = 643
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP--DHC 58
+SA+I+ ++K +R+ +Y FNW+ L GD G LQY+H RL SL + + H
Sbjct: 491 VSAIIIQDMKSKRINNYEFNWNRMLSFEGDTGPYLQYTHSRLRSLERTSSDFTTDMLIHA 550
Query: 59 DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
D L EP ++L+ +A++ +VL +A E+ + + +V YLF + + ++ K++ V G
Sbjct: 551 DFSNLNEPQLVELVRLLAQYPDVLRRAFETQEPATIVTYLFKVCHQVSSCYKKIWVSGKP 610
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
++ RL +++ +R VL+ M +LGL P+D+M
Sbjct: 611 ADIAIPRLAVYSASRQVLHNAMSLLGLVPVDRM 643
>sp|Q05506|SYRC_YEAST Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR341C PE=1 SV=1
Length = 607
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD--HC 58
+SA+++ +++ +R+ +Y F W+ L GD G LQY+H RL S+ + + I +
Sbjct: 455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINA 514
Query: 59 DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
D LL EP A LI + ++ +VL A ++++ + VV YLF LT+ ++ L V G
Sbjct: 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQT 574
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
++ RL L+ AR VL GM +LGL P+++M
Sbjct: 575 EELATARLALYGAARQVLYNGMRLLGLTPVERM 607
>sp|O74781|SYRC_SCHPO Probable arginine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC25B2.09c PE=2
SV=1
Length = 618
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD-HCDP 60
+A+ + + +R+ +Y F+W GD G LQY+H RL S+ + N +
Sbjct: 468 TAIRIQDSTGKRINNYAFDWSRMTSFEGDTGPYLQYAHSRLSSVRRNVNYTDEEIMGANL 527
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+LL EP A L+ + ++ +VL A ++S VV YLF LT++++K L V+G E
Sbjct: 528 ELLTEPDAYDLVRLLGQYPDVLKNAFRFQETSTVVTYLFKLTHAVSKLYDILWVRGRERD 587
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL LF A+ VLN GM +LGL PL++M
Sbjct: 588 IQLARLALFGAAKQVLNNGMTLLGLTPLERM 618
>sp|Q8SRD8|SYR_ENCCU Arginine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU08_0550 PE=1 SV=1
Length = 563
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD--HC 58
+S L+V + RR+K Y F+ ++ + G+ LQY+HCRL S+ + + + D
Sbjct: 411 ISTLLVMDFTARRVKGYEFDIEKRARNTSGTGLYLQYAHCRLRSIETKNSNVDYNDIETI 470
Query: 59 DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
D +L+ P L L+ + F+ V+ + E Y+ S +V YL +L +SIN A+ L+V G +
Sbjct: 471 DFELIHVPKVLNLVYKLLWFEHVVEKCLEDYEPSRIVTYLQDLASSINGAINILRVLGVD 530
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+++ RLL+ + AR+VL+ G+ +LG PL+KM
Sbjct: 531 KELARARLLVLSSARIVLHNGLRILGATPLNKM 563
>sp|Q5T160|SYRM_HUMAN Probable arginine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=RARS2 PE=1 SV=1
Length = 578
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++ALI+ + K L Y F+WD GD GV LQY+H RL SL +E + +
Sbjct: 429 LAALIIQDFKGLLLSDYKFSWDRVFQSRGDTGVFLQYTHARLHSL-EETFGCGYLNDFNT 487
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L EP ++ ++ + RFDEVLY++ + + +V YL L++ A K LQ+K +
Sbjct: 488 ACLQEPQSVSILQHLLRFDEVLYKSSQDFQPRHIVSYLLTLSHLAAVAHKTLQIKDSPPE 547
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V+ RL LF R VL GM +LG+ P+ +M
Sbjct: 548 VAGARLHLFKAVRSVLANGMKLLGITPVCRM 578
>sp|Q5REH3|SYRM_PONAB Probable arginine--tRNA ligase, mitochondrial OS=Pongo abelii
GN=RARS2 PE=2 SV=1
Length = 578
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++ALI+ + K L Y F+WD GD GV LQY+H RL SL +E + +
Sbjct: 429 LAALIIQDFKGLLLSDYKFSWDRVFQSRGDTGVFLQYTHARLHSL-EETFGCGYLNDFNT 487
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L EP ++ ++ + RFDEVLY++ + + +V YL L++ A K LQ+K +
Sbjct: 488 ACLQEPQSVSILQHLLRFDEVLYKSSQDFQPRHIVSYLLTLSHLAAVAHKTLQIKDSPPE 547
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V+ RL LF R VL GM +LG+ P+ +M
Sbjct: 548 VAGARLHLFKAVRSVLANGMKLLGITPVCRM 578
>sp|Q3U186|SYRM_MOUSE Probable arginine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Rars2 PE=2 SV=1
Length = 578
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++A+I+ + + L Y F+WD GD GV LQY+H RL SL +E + +
Sbjct: 429 LAAVIIQDFRGTLLSDYQFSWDRVFQSRGDTGVFLQYTHARLCSL-EETFGCGYLNDSNV 487
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L EP ++ ++ + RFDEVLY + + +V YL L++ A K LQVK +
Sbjct: 488 ACLQEPQSVSILQHLLRFDEVLYLSSQDLQPKHIVSYLLTLSHLAAVAHKTLQVKDSPPD 547
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V+ RL LF R VL GM +LG+ P+ +M
Sbjct: 548 VAGARLHLFKAVRSVLANGMKLLGITPVCRM 578
>sp|Q0P5H7|SYRM_BOVIN Probable arginine--tRNA ligase, mitochondrial OS=Bos taurus
GN=RARS2 PE=2 SV=1
Length = 578
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++ALI+ + + L Y F+WD GD GV LQY+H RL SL +E + +
Sbjct: 429 LAALIIQDFRGFLLSDYQFSWDRVFQSRGDTGVFLQYTHARLHSL-EETFGCGYLNDFNT 487
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L EP ++ ++ + RFDEVLY++ + +V YL L++ A + L V+ +
Sbjct: 488 ACLQEPQSVSILQHLLRFDEVLYRSSQDLQPRHIVSYLLTLSHLAAVAHRTLHVRNSPPE 547
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V+ RL LF R VL GM +LG+ P+ +M
Sbjct: 548 VAGARLHLFRAVRSVLANGMKLLGITPVCRM 578
>sp|B8CWA9|SYR_HALOH Arginine--tRNA ligase OS=Halothermothrix orenii (strain H 168 / OCM
544 / DSM 9562) GN=argS PE=3 SV=1
Length = 566
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECN-AIQPPDHCD 59
+ A+I L R+K Y F+WD L G+ G +QY++ R S+ + N + D D
Sbjct: 417 IGAVIFQELYNSRIKDYVFSWDRTLSFEGETGPYVQYTYVRTKSVLNKSNYKFKKLD--D 474
Query: 60 PKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEY 119
LL + A +I I++F + + +A E Y+ SI+ R++ L + NK Q+ +
Sbjct: 475 YSLLTDEDAFNVIKLISQFPDTIIKASERYEPSIITRHITELAKAFNKYYHDNQILVDDQ 534
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V + RL L VL G+ +LG+K +KM
Sbjct: 535 KVREARLFLVYAVNTVLKTGLSLLGIKTPEKM 566
>sp|A6TNX2|SYR_ALKMQ Arginine--tRNA ligase OS=Alkaliphilus metalliredigens (strain QYMF)
GN=argS PE=3 SV=1
Length = 566
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A++ +L R+K +F+WD G+ G +QY+H R S+ ++ + DH +
Sbjct: 417 IGAIVFNDLSNNRIKDISFSWDTAFSFEGETGPYVQYTHARASSVLRKAE-VAITDHINA 475
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + V + +I I +F +V+ A + SI+ R++ N+ + N+ + +
Sbjct: 476 AHLTDDVTMNVIKTIEQFPQVIVDAQRKNEPSIITRHIVNIAQAFNRFYHDHPILVEDEE 535
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL + + VL+ G+ ++G+K +KM
Sbjct: 536 LKMARLAVVQAVKQVLSVGLSLIGIKAPEKM 566
>sp|Q88X53|SYR_LACPL Arginine--tRNA ligase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=argS PE=3 SV=1
Length = 562
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A++ ++LK R+ S++FN +E + G+ G +QY+H R S+ ++ + P
Sbjct: 415 IGAVVFHDLKNERMNSFDFNLEEVVRFEGETGPYVQYAHARAESILRKAGS--PEIAATE 472
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINK--ALKQLQVKGTE 118
+ L++P A + ++ F + +A Y+ S++ +Y +L + NK A ++ V+ E
Sbjct: 473 QTLSDPAAWDTLKLLSEFPATVVRASTEYEPSVIAKYAIHLAKAYNKYYANTKILVEDDE 532
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L +VL + + +LG+K D+M
Sbjct: 533 LNA---RLALVKSVSIVLKEALRLLGVKAPDEM 562
>sp|Q1WU48|SYR_LACS1 Arginine--tRNA ligase OS=Lactobacillus salivarius (strain UCC118)
GN=argS PE=3 SV=1
Length = 563
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A++ ++LK R+ S++FN DE + G+ G +QYSH R +S+ ++ ++ D
Sbjct: 416 VGAVVFHDLKNERINSFDFNLDEVVRFEGETGPYVQYSHARAMSILRKAGDLELDS--DN 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+++P A Q + +A F E + +A Y+ S+V +Y +L + NK ++ +
Sbjct: 474 LEISDPEAWQTLRLLAAFPETVKKAVSEYEPSVVAKYAIHLAKAFNKYYAHSRILNDDAE 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL L L + + +LG+K ++M
Sbjct: 534 -KNARLALVQSVATTLKESLRLLGVKAPNEM 563
>sp|Q46DR6|SYR_METBF Arginine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=argS PE=3 SV=1
Length = 569
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 15 KSYNFNWDECLHMSGDGGVKLQYSHCRLVSL---AQECNAIQPPDHCDPKLLAEPVALQL 71
KS FNW E L G +QYSH R S+ A+E A DP LL E + L
Sbjct: 429 KSTVFNWKEALDFEKQGAPYIQYSHARACSILEKAKEEAAWNSSAEIDPSLLVEDTEIDL 488
Query: 72 ILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRLLLFN 130
I +A FD V+ A ++ Y L ++ N+ + + V E V RL L N
Sbjct: 489 IKKMASFDRVIDLAARELKPHVLAIYARELADAFNQFYRFVPVIAAEDEKVRASRLALVN 548
Query: 131 KARLVLNQGMCVLGLKPLDKM 151
AR+VL + LG+ + M
Sbjct: 549 CARIVLANSLDTLGIAAPESM 569
>sp|Q831N1|SYR_ENTFA Arginine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=argS PE=3 SV=1
Length = 563
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+I ++LK RL +++F DE + G+ G +QY+H R +S+ ++ N PD
Sbjct: 416 VGAVIFHDLKNDRLNNFDFVLDEVVRFEGETGPYVQYTHARAMSILRKANFT--PDATQR 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + + +++ + +F E + QA E Y+ S++ ++ +L + NK +++ +
Sbjct: 474 YALNDKDSWEVVKLLQKFPETVMQAAEKYEPSVIAKHSIHLAQAFNKYYAHVRILDEDAQ 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L VL + + +LGL ++M
Sbjct: 534 -KEARLALVYAVATVLKEDLRLLGLHAPEEM 563
>sp|A4VYA3|SYR_STRSY Arginine--tRNA ligase OS=Streptococcus suis (strain 05ZYH33)
GN=argS PE=3 SV=1
Length = 562
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ + + G+ G +QY++ R+ S+ ++ N + P+ +
Sbjct: 415 VGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKANFV--PNAEND 472
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
LA+ + ++I I F V+ +A + +D S++ +Y NL + NK ++ E
Sbjct: 473 YKLADTESWEIIKHIQNFSAVVERAGDKFDPSLIAKYAINLAQAFNKYYAHTRIL-DESP 531
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL L LVL + + +LG+K +KM
Sbjct: 532 ERDSRLALAYATGLVLKEALRLLGVKAPEKM 562
>sp|A4W4J9|SYR_STRS2 Arginine--tRNA ligase OS=Streptococcus suis (strain 98HAH33)
GN=argS PE=3 SV=1
Length = 562
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ + + G+ G +QY++ R+ S+ ++ N + P+ +
Sbjct: 415 VGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQYAYARIQSILRKANFV--PNAEND 472
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
LA+ + ++I I F V+ +A + +D S++ +Y NL + NK ++ E
Sbjct: 473 YKLADTESWEIIKHIQNFSAVVERAGDKFDPSLIAKYAINLAQAFNKYYAHTRIL-DESP 531
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL L LVL + + +LG+K +KM
Sbjct: 532 ERDSRLALAYATGLVLKEALRLLGVKAPEKM 562
>sp|B1VTB7|SYR_STRGG Arginine--tRNA ligase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=argS PE=3 SV=1
Length = 594
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 8 NLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPV 67
+L ++ Y F+ D+ + + GD V LQY++ R+ S+ ++ P H P+L P
Sbjct: 451 DLSTSAVRDYKFDLDQMVALHGDTSVYLQYAYARIRSILRKAGDAVPAAH--PELELAPA 508
Query: 68 ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEY--HVSQHR 125
L L + +F EVL + Y+ + YL+ L + + Q QV + V ++R
Sbjct: 509 ERALGLHLDQFGEVLAEVGTGYEPHKLAAYLYQLASHLTTFYDQCQVLSPDNAPEVVENR 568
Query: 126 LLLFNKARLVLNQGMCVLGLKPLDKM 151
L L L++GM +LG++ +++
Sbjct: 569 LFLVELTARTLHRGMALLGIRTPERL 594
>sp|Q8PX74|SYR_METMA Arginine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=argS
PE=3 SV=1
Length = 569
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 15 KSYNFNWDECLHMSGDGGVKLQYSHCRLVSL---AQECNAIQPPDHCDPKLLAEPVALQL 71
KS FNW E L G +QYSH R S+ A+E A P DP LL E + L
Sbjct: 429 KSTVFNWKEALDFEKQGAPYIQYSHARACSILEKAKEEAAWNPDKEIDPSLLVEDSEIDL 488
Query: 72 ILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRLLLFN 130
I +A FD V+ ++ Y L ++ N+ + + V E +V RL L +
Sbjct: 489 IKKMAMFDSVIDLGARELKPHVLAIYARELADAFNQFYRFVPVIAAEDENVRAARLALVD 548
Query: 131 KARLVLNQGMCVLGLKPLDKM 151
AR+VL + LG+ + M
Sbjct: 549 CARVVLANSLDTLGIIAPESM 569
>sp|Q02W95|SYR_LACLS Arginine--tRNA ligase OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=argS PE=3 SV=1
Length = 564
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ DE + G+ G +QY+H R+ S+ ++ N D+
Sbjct: 416 VGAVKFYDLKTDRNNGYDFDLDEMVSFEGETGPYVQYAHARIQSILRKANRKVNIDNIS- 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
++++ A +++ + F ++ +A ++Y+ SI+ +Y +L + NK +++ +
Sbjct: 475 LVVSDAEAWEIVKALKEFPNIVKRAADNYEPSIIAKYAISLAQAFNKYYAHVRILEDDAQ 534
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L + +VL + + +LG+ + M
Sbjct: 535 LDG-RLALISATSIVLKEALRLLGVAAPENM 564
>sp|A2RNI8|SYR_LACLM Arginine--tRNA ligase OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=argS PE=3 SV=1
Length = 564
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ DE + G+ G +QY+H R+ S+ ++ N D+
Sbjct: 416 VGAVKFYDLKTDRNNGYDFDLDEMVSFEGETGPYVQYAHARIQSILRKANRKVNIDNIS- 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
++++ A +++ + F ++ +A ++Y+ SI+ +Y +L + NK +++ +
Sbjct: 475 LVVSDAEAWEIVKALKEFPNIVKRAADNYEPSIIAKYAISLAQAFNKYYAHVRILEDDAQ 534
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L + +VL + + +LG+ + M
Sbjct: 535 LDG-RLALISATSIVLKEALRLLGVAAPENM 564
>sp|Q03WV9|SYR_LEUMM Arginine--tRNA ligase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=argS PE=3
SV=1
Length = 563
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKL 62
A++ ++L R +++FN +E + GD G +QY++ R S+ ++ + D +
Sbjct: 419 AVVFHDLMNDRTNNFDFNLEEVVRFEGDTGPYVQYTNARAKSILRKTSVQLTSDDLN--- 475
Query: 63 LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVS 122
L +P +I + F + + +A + ++SI+ +Y NL+ + NK ++ + ++
Sbjct: 476 LTDPATWDIITTLNNFPKTVQRAWQQREASIIAKYALNLSRAFNKYYANSKILTEDVQLN 535
Query: 123 QHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL+L +VL + + +LG+K ++M
Sbjct: 536 A-RLVLVKSVSIVLTESLRLLGVKAPEEM 563
>sp|O84460|SYR_CHLTR Arginine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=argS PE=3 SV=1
Length = 563
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++A+ +L R+ Y F++++ L G+ + L Y++ R+ + + PP P
Sbjct: 416 INAIKYADLSSHRINDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESPPQE-GP 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+ EP L L + RF E+L + YL+ LTN N + ++G++
Sbjct: 475 LAVHEPAEEALALTLLRFPEILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQ 534
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
Q RL L L+ GM +LGLK L+ +
Sbjct: 535 --QERLYLCGLTERTLSTGMHLLGLKTLNHL 563
>sp|Q8TUM3|SYR_METAC Arginine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=argS PE=3 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 15 KSYNFNWDECLHMSGDGGVKLQYSHCRLVSL---AQECNAIQPPDHCDPKLLAEPVALQL 71
KS FNW E L G +QYSH R S+ A++ A P + P LL E + L
Sbjct: 427 KSTVFNWKEALDFEKQGAPYIQYSHARACSILEKAKDEAAWDPAEEITPSLLVEDSEIDL 486
Query: 72 ILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRLLLFN 130
I +A FD ++ ++ Y L +S N+ + + V E V RL L +
Sbjct: 487 IKKMAMFDSIIDLGARELKPHVLAIYARELADSFNQFYRFVPVIAAEDEKVRASRLALVD 546
Query: 131 KARLVLNQGMCVLGLKPLDKM 151
AR+VL + LG+ + M
Sbjct: 547 CARIVLANSLDTLGIGAPESM 567
>sp|Q9HHN2|SYR_HALSA Arginine--tRNA ligase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=argS PE=3 SV=1
Length = 631
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 12 RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQL 71
+R + F+ DE + + GD G +QY+ R S+ +A D DP + + ++L
Sbjct: 494 KRERDTTFDIDESVALEGDTGPYVQYAATRGYSILDGADAAPEIDDLDPSVFND-TDVEL 552
Query: 72 ILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNK 131
+ ++AR+ VL + E YD++ + YL L + N + V E + RLLL
Sbjct: 553 LFELARYPLVLERCEERYDAAPLAHYLLQLAHVFNSFYHKNAVLDAE-NARTERLLLTKA 611
Query: 132 ARLVLNQGMCVLGLKPLDKM 151
+ + G+ +LG+ L++M
Sbjct: 612 TTQIFDNGLGLLGIDVLEEM 631
>sp|Q9PJT8|SYR_CHLMU Arginine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=argS PE=3 SV=1
Length = 563
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++A+ +L R+ Y F++++ L G+ + L Y++ R+ + + P P
Sbjct: 416 INAIKYADLSAHRINDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMKLDTLPQK-GP 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+ EP L L + RF EVL + YL+ LTN N + ++G++Y
Sbjct: 475 LSIHEPAEETLALTLLRFPEVLDLTLRELCPHFLTDYLYVLTNKFNAFFRDCHIEGSDYQ 534
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
Q RL L L GM +LGLK LD +
Sbjct: 535 --QERLYLCGLTEKTLETGMHLLGLKTLDHL 563
>sp|B4ETN5|SYR_PROMH Arginine--tRNA ligase OS=Proteus mirabilis (strain HI4320) GN=argS
PE=3 SV=1
Length = 576
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Query: 8 NLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPV 67
+L R Y F+WD L G+ +QY++ R+ S+ + + I P L +P
Sbjct: 433 DLSKNRTTDYIFDWDLMLSFEGNTAPYMQYAYTRVASIFKRAD-IDESALTQPISLTQPH 491
Query: 68 ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRL 126
QL L + +FDE + Q ++ YL++L S + + + E +V Q RL
Sbjct: 492 EKQLALRLVQFDETITQVAREGTPHVMCAYLYDLAQSFSGFYENCPILSAEDDNVRQSRL 551
Query: 127 LLFNKARLVLNQGMCVLGLKPLDKM 151
L L QG+ LG++ +D+M
Sbjct: 552 KLARLTARTLKQGLETLGIETVDRM 576
>sp|Q9CE12|SYR_LACLA Arginine--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=argS PE=3 SV=1
Length = 564
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ DE + G+ G +QY+H R+ S+ ++ N + D +
Sbjct: 416 VGAVKFYDLKTDRNNGYDFDLDEMVSFEGETGPYVQYAHARIQSILRKAN--RKVDINNI 473
Query: 61 KL-LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEY 119
L +++ A +++ + F V+ +A ++Y+ S++ +Y +L + NK +++ +
Sbjct: 474 SLAVSDAEAWEIVKALKEFPNVVKRAADNYEPSVIAKYAISLAQAFNKYYAHVRILEDDA 533
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L + +VL + + +LG+ + M
Sbjct: 534 QLDG-RLALISATSIVLKEALRLLGVAAPENM 564
>sp|Q8DWV9|SYR_STRA5 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=argS PE=3 SV=1
Length = 563
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ + + G+ G +QY+H R+ S+ ++ N P + D
Sbjct: 416 VGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANF--SPSNSDN 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + + ++I I F ++ +A ++++ SI+ ++ NL NK ++ +
Sbjct: 474 YSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAE 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+S RL L VL + + +LG+ ++M
Sbjct: 534 ISS-RLALCYATATVLKESLRLLGVDAPNEM 563
>sp|Q3AFT8|SYR_CARHZ Arginine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=argS PE=3 SV=1
Length = 557
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 35 LQYSHCRLVSLAQECN----AIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYD 90
+QY+H R++SL ++CN + P + D +L+ L L+ +A F + + +
Sbjct: 437 IQYAHARIMSLYRQCNEQGVTLPPVEDVDLAILSSEAELNLLRHLAEFPVEIEKCATALA 496
Query: 91 SSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDK 150
+ RYL L + +V G E ++S+ RLLL R+VL +G+ +LG+ +K
Sbjct: 497 PHHLARYLHELAGYFHTFYNSCRVLGVEENLSKARLLLVEATRIVLRKGLKMLGVSAPEK 556
Query: 151 M 151
M
Sbjct: 557 M 557
>sp|Q3JYM1|SYR_STRA1 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=argS PE=3 SV=1
Length = 563
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ + + G+ G +QY+H R+ S+ ++ N P + D
Sbjct: 416 VGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANF--NPSNSDN 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + + ++I I F ++ +A ++++ SI+ ++ NL NK ++ +
Sbjct: 474 YSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAE 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+S RL L VL + + +LG+ ++M
Sbjct: 534 ISS-RLALCYATATVLKESLRLLGVDAPNEM 563
>sp|Q8E2R1|SYR_STRA3 Arginine--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=argS PE=3 SV=1
Length = 563
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R Y+F+ + + G+ G +QY+H R+ S+ ++ N P + D
Sbjct: 416 VGAIKFYDLKTDRTNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKANF--NPSNSDN 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + + ++I I F ++ +A ++++ SI+ ++ NL NK ++ +
Sbjct: 474 YSLNDVESWEIIKLIQDFPRIIVRAADNFEPSIIAKFAINLAQCFNKYYAHTRILDEDAE 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+S RL L VL + + +LG+ ++M
Sbjct: 534 ISS-RLALCYATATVLKESLRLLGVDAPNEM 563
>sp|Q896N5|SYR_CLOTE Arginine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=argS PE=3 SV=1
Length = 563
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+I LK R + F+WDE L G+ G +QYS+ R S+ ++ IQ D
Sbjct: 414 IGAVIFTYLKNNRERDIVFSWDEMLSFDGETGPYVQYSYARGKSILRKSGEIQ--GDVDY 471
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-Y 119
L +L+ + F++ + QA E + SIV RY+ + + NK + E
Sbjct: 472 SKLNSKEEFELVKTLEGFNKSILQAIEKLEPSIVTRYVIEVAKAFNKFYNHNSILNAEDE 531
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ + R+ L V+ + +LG++ ++KM
Sbjct: 532 EIKKARIKLVESTCQVIKNALNLLGIEVVEKM 563
>sp|Q82E68|SYR_STRAW Arginine--tRNA ligase OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=argS PE=3 SV=1
Length = 590
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 8 NLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPV 67
+L ++ Y F+ D+ + ++GD V LQY++ R+ S+ + P H P+L P
Sbjct: 447 DLSTSAVRDYKFDLDQMVSLNGDTSVYLQYAYARIRSIFGKAGDRTPLAH--PELELAPA 504
Query: 68 ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV--KGTEYHVSQHR 125
L L + RF E L + Y + YL+ L + Q V V+++R
Sbjct: 505 ERALGLHLDRFGETLDEVAAEYAPHKLAAYLYQLASLYTTFYDQCPVIKPAPAQEVAENR 564
Query: 126 LLLFNKARLVLNQGMCVLGLKPLDKM 151
L L + L+QGM +LG++ +++
Sbjct: 565 LFLCDLTARTLHQGMALLGIRTPERL 590
>sp|C4L0Z5|SYR_EXISA Arginine--tRNA ligase OS=Exiguobacterium sp. (strain ATCC BAA-1283
/ AT1b) GN=argS PE=3 SV=1
Length = 560
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP-DHCD 59
+ A++ ++LK R+ + F+ D L G+ G +QY++ R SL ++ N P D
Sbjct: 415 VGAVVFHDLKNERINNIEFDLDSMLKFEGETGPYVQYTNARANSLLRKGNYDGSPFTGAD 474
Query: 60 PKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEY 119
+ + ++ + F V+ +AHE + SI+ RY+ +L + NK ++V E
Sbjct: 475 -----DDYSWGVVTMLNAFPHVITRAHERREPSIISRYVLDLAQAFNKYYGHVRVL-EED 528
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
Q RL L LVL +G+ +LG++ ++M
Sbjct: 529 AGKQSRLALVKAVTLVLTEGLRLLGVEAPEEM 560
>sp|Q5FIQ9|SYR_LACAC Arginine--tRNA ligase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=argS PE=3 SV=1
Length = 561
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI-QPPDHCD 59
+ A++ ++LK RL +++F+ DE + GD G +QY++ R S+ ++ A+ + P D
Sbjct: 412 VGAVVFHDLKNDRLDNFDFDLDEVVRFEGDTGPYVQYTNARAQSVLRKAAAMGEKPSEGD 471
Query: 60 PKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEY 119
+ + A + D+A F ++ ++ E ++ S++ ++ +L NK +++ +
Sbjct: 472 FN-INDDWAFAVAKDLADFPRIVARSAEKFEPSVIAKFALDLAKKFNKYYANVKILTKDD 530
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L +VL + + +LG+ +M
Sbjct: 531 QIGA-RLALVQATSIVLTESLRLLGVNAPKEM 561
>sp|Q3KLP4|SYR_CHLTA Arginine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=argS PE=3 SV=1
Length = 563
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
++A+ +L R+ Y F++++ L G+ + L Y++ R+ + + P +P
Sbjct: 416 INAIKYADLSSHRINDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESLPQE-EP 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+ EP L L + RF E+L + YL+ LTN N + ++G++
Sbjct: 475 LAIHEPAEEALALTLLRFPEILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQ 534
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
Q RL L L+ GM +LGLK L+ +
Sbjct: 535 --QERLYLCGLTERTLSTGMHLLGLKTLNHL 563
>sp|C1D5W4|SYR_LARHH Arginine--tRNA ligase OS=Laribacter hongkongensis (strain HLHK9)
GN=argS PE=3 SV=1
Length = 573
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 8 NLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPV 67
+L R Y FNWD L G+ LQY++ R+ S+ ++ + D P L+ EP
Sbjct: 433 DLSKNRNSDYIFNWDLMLAFEGNTAPYLQYAYTRVASIFRKVDRF---DASAPLLITEPA 489
Query: 68 ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLL 127
QL L +A+F +VL + + ++ +YL+ + + + + +E RL
Sbjct: 490 EKQLALMLAQFSDVLNEVARTCFPHLLTQYLYQVATQFMRFYEACPILKSEGATQASRLK 549
Query: 128 LFNKARLVLNQGMCVLGLKPLDKM 151
L L G+ +LG++ L+ M
Sbjct: 550 LARITADTLKTGLGLLGIEVLESM 573
>sp|A1RS32|SYR_PYRIL Arginine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=argS PE=3 SV=1
Length = 632
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 15 KSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILD 74
K F W+ L+M + G LQY++ R S+ ++ I PK + P +LIL
Sbjct: 497 KPIEFKWETVLNMRQNSGPFLQYTYVRAYSILEKAQEIDLKKVAIPKEIL-PEERELILK 555
Query: 75 IARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARL 134
+A + V+ +A + V +L L N ++ V TE V RL L N +
Sbjct: 556 VAEWPSVVREATRALRPDYVAEFLDGLALIFNSYYEKAPVLKTEEPVRSFRLALVNSVKT 615
Query: 135 VLNQGMCVLGLKPLDKM 151
VL G +LG+ L KM
Sbjct: 616 VLAAGFYILGIPTLTKM 632
>sp|Q03GE2|SYR_PEDPA Arginine--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC 25745
/ 183-1w) GN=argS PE=3 SV=1
Length = 562
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+I ++LK R S++FN ++ + G+ G +QYS R S+ ++ ++ +
Sbjct: 416 VGAVIFHDLKNERTNSFDFNLEDVVRFEGETGPYVQYSRARAESILRKAGDVEEFAQLN- 474
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+ +P A + + F ++ +A Y+ S++ +Y L + NK ++ +
Sbjct: 475 --ITDPKAWDTLKALQDFPNIVKRAAAQYEPSVIAKYALGLAKAFNKYYANSKILADDEE 532
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ RL L +VL + + +LG+K D+M
Sbjct: 533 KTA-RLALVKSVSIVLEESLRLLGVKAPDEM 562
>sp|Q6MEP4|SYR_PARUW Arginine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=argS PE=3 SV=1
Length = 584
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP----D 56
+ A+ +L R+ Y F++D L G+ L Y++ R+ + + A P
Sbjct: 435 IGAIKYADLSCNRVGDYTFSYDRMLRFEGNTAAFLMYAYVRIAGIKRRLKANLPAVLENT 494
Query: 57 HCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKG 116
H + L ++L L I RF E L + + YL+ L N + +V+G
Sbjct: 495 HIN---LEHSTEIELGLHILRFHETLNLMANDLLPNRLTDYLYTLAEKFNAFFRDCRVEG 551
Query: 117 TEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
T + RLLL VL QG+ +LGL +DKM
Sbjct: 552 TPQQNT--RLLLCEATAKVLKQGLTILGLTTVDKM 584
>sp|Q9JTM7|SYR_NEIMA Arginine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=argS PE=3 SV=1
Length = 572
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 8 NLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPV 67
+L R +Y F+WD L G+ LQY++ R+ S+ ++ D P +L+EP+
Sbjct: 432 DLSKNRTSNYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAGEW---DATAPTVLSEPL 488
Query: 68 ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLL 127
QL ++ +F++VL ++ + YL+ + ++ + + E RL
Sbjct: 489 EKQLAAELLKFEDVLQSVADTAYPHYLAAYLYQIATLFSRFYEACPILKAESASRNSRLQ 548
Query: 128 LFNKARLVLNQGMCVLGLKPLDKM 151
L L QG+ +LG+ LD M
Sbjct: 549 LAKLTGDTLKQGLDLLGIDVLDVM 572
>sp|Q9KEL8|SYR2_BACHD Arginine--tRNA ligase 2 OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=argS2
PE=3 SV=1
Length = 561
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 75/151 (49%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+I +LK R NF ++ L G+ G +QY++ R+ S+ ++ + + H D
Sbjct: 411 VGAVIFGDLKQDRRLDVNFRLEDALSFEGETGPYVQYTYARIQSILRKGDKLNDSRHMDW 470
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
+ + + L+ + ++ VL +A E+ + + RY+ ++ N+ + + +
Sbjct: 471 QHVTKDEGWSLLKVLIQYPNVLIKATEAREPHQLARYVLTVSKKFNQFYHKYVILADDET 530
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
V Q RL+L + V+ M VLG+K +++
Sbjct: 531 VRQARLILAERTGEVIADAMAVLGVKTPEEL 561
>sp|Q189Q7|SYR_CLOD6 Arginine--tRNA ligase OS=Clostridium difficile (strain 630) GN=argS
PE=3 SV=1
Length = 566
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A++ L R+K Y F+W+ L G+ G +QY+H R ++ ++ ++ D
Sbjct: 417 VGAVVFQELSNSRIKDYTFSWERTLSFDGETGPYVQYTHARCCAVLRKAE-VEVTSDIDY 475
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
LLA+ + +++ I F++ + A + + IV R++ +L + NK +
Sbjct: 476 SLLADEDSAEVLRVIESFNKNILLALKKNEPHIVTRFMLDLAQAFNKFYHDNPILVENLE 535
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ + RL L + L + +LG+ ++M
Sbjct: 536 IRKARLALVLATKQTLENSLKLLGMHAPERM 566
>sp|Q38VQ9|SYR_LACSS Arginine--tRNA ligase OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=argS PE=3 SV=1
Length = 563
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+I ++LK RL +++F+ +E + G+ G +QY++ R S+ ++ N D D
Sbjct: 416 IGAVIFHDLKNDRLDNFDFDLEEVVRFEGETGPYVQYTNARAQSILRKANQEVVVD--DQ 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
++A+ A ++ ++ F V+ +A + Y+ SIV +Y L + NK ++ +
Sbjct: 474 LVVADDNAWDVLKMLSNFPAVIARASKEYEPSIVAKYALRLAKAFNKYYANSKILADDDQ 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
RL L +VL + +LG++ +M
Sbjct: 534 -RNARLSLVKSVSIVLETALDLLGVQAPKEM 563
>sp|A6LS73|SYR_CLOB8 Arginine--tRNA ligase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=argS PE=3 SV=1
Length = 563
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCR---LVSLAQECNAIQPPDH 57
+ A+I LK R K F+W E L G+ G +QYS+ R +++ +EC
Sbjct: 414 VGAVIFTYLKNSREKDIVFDWKEILSFDGETGPYVQYSYARGNSILNRGKECTGT----- 468
Query: 58 CDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGT 117
D L+ +L+ IA F+ V+ A + + SI+ RY+ + NK V
Sbjct: 469 VDYSKLSSKEEFELVKSIANFNSVITLALDKLEPSILTRYVIEVAKGFNKFYNAHSVLNL 528
Query: 118 E-YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
E + RL L + V+ G+ +LG+ ++KM
Sbjct: 529 EDEDLKATRLNLVKASLQVIKNGLELLGIDVVEKM 563
>sp|P59483|SYR_BUCBP Arginine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=argS PE=3 SV=1
Length = 578
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ ++L RL Y F WDE L G+ +QY++ R++S+ ++ N I
Sbjct: 428 IGAIKYFDLSKNRLTDYIFKWDEILTFDGNTAPYMQYAYIRILSIFKKLN-ISMLKLSGN 486
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV-KGTEY 119
+L E + +L + + +F+E++ ++ + I+ +YL+ L+ +K ++ + K
Sbjct: 487 IILTELLENKLAIKLFQFEEIILESLQHSAPHIICKYLYELSKIFSKFYEKCSIYKSKNT 546
Query: 120 HVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+ ++RLLL L +G+ ++G+ + M
Sbjct: 547 KIRKNRLLLSLLTARTLKKGLFIIGISTIKYM 578
>sp|Q74KR5|SYR_LACJO Arginine--tRNA ligase OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=argS PE=3 SV=1
Length = 558
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A++ ++LK R+ +++F+ +E + GD G +QY++ R S+ ++ N D+
Sbjct: 412 VGAVVFHDLKNDRMDNFDFDLEEVVRFEGDTGPYVQYTNARAQSILRKANKEISMDNLS- 470
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L + + + +A F ++ +A E ++ SI+ +Y +L+ NK +++ +
Sbjct: 471 --LNDDWSFAVAKALADFPAIVEKASEKFEPSIIAKYALDLSKKFNKYYANVRILDEDNQ 528
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
++ RL L +VL + + +LG+ +M
Sbjct: 529 LNA-RLALVQATSIVLTEALRLLGVNAPKEM 558
>sp|C0MAS8|SYR_STRE4 Arginine--tRNA ligase OS=Streptococcus equi subsp. equi (strain
4047) GN=argS PE=3 SV=1
Length = 563
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
+ A+ Y+LK R+ Y+F+ + + G+ G +QY+H R+ S+ ++ + D
Sbjct: 416 VGAIKFYDLKTDRMNGYDFDLEAMVSFEGETGPYVQYAHARIQSILRKASFTPATD--TS 473
Query: 61 KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
L +P + ++I I F ++ +A ++++ SI+ ++ +L S NK ++ +
Sbjct: 474 YSLNDPESWEIIKLIQDFPRIIKRAFDNFEPSIMAKFAIHLAQSFNKYYAHTRILEDDPE 533
Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
+RL L +VL + + +LG++ ++M
Sbjct: 534 -RDNRLALCYATAIVLKEALRLLGVEAPNEM 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,011,309
Number of Sequences: 539616
Number of extensions: 1871359
Number of successful extensions: 5868
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 5348
Number of HSP's gapped (non-prelim): 493
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)