Query psy6239
Match_columns 151
No_of_seqs 123 out of 1034
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:18:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07956 Anticodon_Ia_Arg Antic 100.0 2.9E-44 6.3E-49 258.8 17.1 151 1-151 5-156 (156)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 1.2E-44 2.6E-49 303.8 16.9 150 1-151 425-577 (577)
3 PLN02286 arginine-tRNA ligase 100.0 9.5E-42 2.1E-46 288.0 16.8 149 1-151 427-576 (576)
4 PRK12451 arginyl-tRNA syntheta 100.0 1.3E-38 2.7E-43 268.6 17.6 147 1-151 416-562 (562)
5 PRK01611 argS arginyl-tRNA syn 100.0 1.4E-35 3E-40 247.9 16.5 148 1-151 359-507 (507)
6 TIGR00456 argS arginyl-tRNA sy 100.0 8.7E-35 1.9E-39 245.7 17.5 150 1-151 415-566 (566)
7 PF05746 DALR_1: DALR anticodo 100.0 3.1E-35 6.7E-40 202.5 10.9 117 35-151 1-119 (119)
8 KOG1195|consensus 100.0 1.8E-34 4E-39 233.8 14.1 151 1-151 415-567 (567)
9 smart00836 DALR_1 DALR anticod 100.0 1.5E-32 3.3E-37 190.0 13.0 117 35-151 1-122 (122)
10 KOG4426|consensus 100.0 1.5E-31 3.2E-36 214.3 13.7 150 2-151 497-656 (656)
11 PRK01233 glyS glycyl-tRNA synt 99.7 1.3E-15 2.7E-20 130.8 13.3 133 9-142 542-677 (682)
12 TIGR00211 glyS glycyl-tRNA syn 99.7 1.3E-15 2.9E-20 130.8 13.1 134 8-142 551-687 (691)
13 COG0751 GlyS Glycyl-tRNA synth 99.6 4.6E-15 1E-19 125.9 13.1 135 6-141 548-685 (691)
14 PRK14908 glycyl-tRNA synthetas 99.6 1.4E-14 3E-19 127.6 12.6 129 8-142 866-997 (1000)
15 PTZ00399 cysteinyl-tRNA-synthe 99.3 4.7E-11 1E-15 102.8 13.0 132 3-151 337-469 (651)
16 TIGR00398 metG methionyl-tRNA 98.8 2.6E-07 5.7E-12 78.2 13.5 109 2-114 348-458 (530)
17 PRK11893 methionyl-tRNA synthe 98.6 1.6E-06 3.5E-11 72.9 13.0 108 2-113 320-429 (511)
18 PRK00133 metG methionyl-tRNA s 98.3 8.2E-06 1.8E-10 71.1 11.9 104 2-114 350-457 (673)
19 PRK12268 methionyl-tRNA synthe 98.2 3.5E-05 7.7E-10 65.6 12.6 107 2-114 355-464 (556)
20 cd07375 Anticodon_Ia_like Anti 97.5 0.0094 2E-07 39.4 12.5 104 35-140 10-113 (117)
21 PLN02946 cysteine-tRNA ligase 97.1 0.0048 1E-07 52.8 9.8 129 2-146 344-474 (557)
22 PRK06039 ileS isoleucyl-tRNA s 96.9 0.032 6.9E-07 51.0 13.7 134 3-143 614-755 (975)
23 PRK12267 methionyl-tRNA synthe 96.9 0.029 6.2E-07 49.0 12.8 108 3-114 321-430 (648)
24 PRK05729 valS valyl-tRNA synth 96.8 0.068 1.5E-06 48.3 14.8 132 2-144 541-677 (874)
25 TIGR00392 ileS isoleucyl-tRNA 96.7 0.029 6.4E-07 50.5 12.1 103 3-109 633-739 (861)
26 PLN02610 probable methionyl-tR 96.6 0.064 1.4E-06 48.0 13.0 110 3-114 371-486 (801)
27 PRK00260 cysS cysteinyl-tRNA s 96.4 0.076 1.7E-06 44.6 11.9 110 3-145 288-398 (463)
28 COG0143 MetG Methionyl-tRNA sy 96.4 0.16 3.4E-06 43.8 13.7 107 3-112 355-463 (558)
29 PLN02224 methionine-tRNA ligas 96.1 0.2 4.4E-06 43.6 13.0 107 3-113 388-496 (616)
30 cd07957 Anticodon_Ia_Met Antic 95.0 0.66 1.4E-05 31.2 10.9 104 40-148 14-119 (129)
31 PRK13804 ileS isoleucyl-tRNA s 94.5 1 2.3E-05 41.3 12.8 98 3-109 652-755 (961)
32 TIGR00422 valS valyl-tRNA synt 94.2 1.4 3E-05 39.9 12.8 132 3-144 547-684 (861)
33 PRK13208 valS valyl-tRNA synth 93.3 3.4 7.5E-05 37.1 13.5 132 2-144 554-690 (800)
34 PRK12300 leuS leucyl-tRNA synt 92.4 4.8 0.0001 36.8 13.3 96 3-112 599-696 (897)
35 PLN02943 aminoacyl-tRNA ligase 92.2 5.3 0.00012 36.8 13.4 134 3-144 605-755 (958)
36 PRK05743 ileS isoleucyl-tRNA s 92.1 3 6.6E-05 38.1 11.7 98 3-109 614-717 (912)
37 PRK00390 leuS leucyl-tRNA synt 91.6 8.2 0.00018 34.9 13.7 95 3-109 592-687 (805)
38 PLN02843 isoleucyl-tRNA synthe 91.5 9 0.00019 35.4 14.1 102 3-113 642-749 (974)
39 cd07958 Anticodon_Ia_Leu_BEm A 89.9 4 8.6E-05 26.7 10.0 46 66-111 38-83 (117)
40 COG0060 IleS Isoleucyl-tRNA sy 89.4 5 0.00011 36.8 10.3 129 3-144 624-764 (933)
41 KOG0436|consensus 89.2 1.2 2.5E-05 37.4 5.7 110 2-114 365-478 (578)
42 PLN02882 aminoacyl-tRNA ligase 88.8 10 0.00022 35.7 12.2 139 3-144 636-785 (1159)
43 COG0525 ValS Valyl-tRNA synthe 87.3 23 0.00051 32.4 13.4 130 3-145 547-684 (877)
44 PRK14900 valS valyl-tRNA synth 85.5 32 0.0007 32.2 15.5 132 3-143 560-698 (1052)
45 PTZ00419 valyl-tRNA synthetase 84.3 20 0.00044 33.2 11.6 76 66-144 709-789 (995)
46 PRK14536 cysS cysteinyl-tRNA s 84.1 13 0.00029 31.7 9.6 99 2-107 301-404 (490)
47 PF08264 Anticodon_1: Anticodo 82.3 14 0.0003 25.5 8.6 74 69-145 2-79 (153)
48 PTZ00427 isoleucine-tRNA ligas 82.3 34 0.00075 32.6 12.3 78 65-144 810-890 (1205)
49 cd07959 Anticodon_Ia_Leu_AEc A 82.2 12 0.00025 24.5 9.0 48 65-112 34-82 (117)
50 cd07962 Anticodon_Ia_Val Antic 79.7 17 0.00036 24.8 10.5 50 65-114 41-92 (135)
51 KOG4077|consensus 79.3 6.7 0.00014 27.6 5.1 59 79-150 84-142 (149)
52 TIGR00395 leuS_arch leucyl-tRN 78.0 58 0.0013 30.1 12.7 95 3-108 642-738 (938)
53 PLN02381 valyl-tRNA synthetase 75.7 72 0.0016 30.0 13.3 134 3-144 714-856 (1066)
54 TIGR00435 cysS cysteinyl-tRNA 69.7 68 0.0015 27.1 10.6 89 2-106 286-375 (465)
55 cd00923 Cyt_c_Oxidase_Va Cytoc 62.7 6.9 0.00015 26.1 2.1 50 95-151 52-101 (103)
56 KOG2007|consensus 61.0 83 0.0018 27.2 8.6 122 3-147 327-454 (586)
57 cd07961 Anticodon_Ia_Ile_ABEc 59.1 64 0.0014 23.1 8.8 78 65-144 46-126 (183)
58 PF02284 COX5A: Cytochrome c o 56.5 4.4 9.6E-05 27.2 0.4 24 128-151 81-104 (108)
59 PRK14534 cysS cysteinyl-tRNA s 49.3 11 0.00023 32.2 1.7 26 2-27 301-326 (481)
60 TIGR00396 leuS_bact leucyl-tRN 48.7 2.2E+02 0.0047 26.2 12.8 98 2-108 625-725 (842)
61 PF09385 HisK_N: Histidine kin 47.8 37 0.00081 23.8 3.9 52 92-143 6-61 (133)
62 PF09190 DALR_2: DALR domain; 47.2 58 0.0013 19.1 5.1 47 88-146 9-55 (63)
63 PRK14535 cysS cysteinyl-tRNA s 46.7 2.2E+02 0.0048 25.7 11.6 83 3-108 530-613 (699)
64 COG2445 Uncharacterized conser 46.4 1E+02 0.0022 21.7 6.6 52 63-114 79-130 (138)
65 cd07960 Anticodon_Ia_Ile_BEm A 42.5 1.2E+02 0.0027 21.5 10.5 78 65-145 43-126 (180)
66 KOG0432|consensus 41.7 3E+02 0.0064 25.7 11.2 129 3-144 652-792 (995)
67 PRK12418 cysteinyl-tRNA synthe 39.0 1.1E+02 0.0024 25.3 6.1 77 3-108 284-361 (384)
68 PF14024 DUF4240: Protein of u 38.9 1.3E+02 0.0027 20.6 9.0 76 66-141 4-95 (128)
69 PF03489 SapB_2: Saposin-like 38.9 50 0.0011 16.9 2.8 21 78-98 12-32 (35)
70 TIGR00464 gltX_bact glutamyl-t 33.2 17 0.00037 30.8 0.5 28 2-29 286-313 (470)
71 KOG1532|consensus 32.8 2.5E+02 0.0055 22.7 6.8 104 2-116 136-243 (366)
72 COG0215 CysS Cysteinyl-tRNA sy 32.3 3.2E+02 0.007 23.3 8.9 23 3-25 290-312 (464)
73 COG3852 NtrB Signal transducti 27.8 3.4E+02 0.0073 22.2 6.8 83 64-148 162-262 (363)
74 COG4103 Uncharacterized protei 27.8 1.6E+02 0.0035 21.0 4.5 59 90-149 67-139 (148)
75 PF15469 Sec5: Exocyst complex 25.9 1.7E+02 0.0037 21.0 4.7 36 74-109 85-120 (182)
76 TIGR00467 lysS_arch lysyl-tRNA 24.5 45 0.00097 28.7 1.5 23 2-24 295-317 (515)
77 PF09380 FERM_C: FERM C-termin 23.8 1.1E+02 0.0025 19.0 3.1 21 92-112 65-85 (90)
78 KOG4779|consensus 23.4 1.1E+02 0.0025 19.0 2.7 35 110-146 36-71 (82)
79 PF10537 WAC_Acf1_DNA_bd: ATP- 23.3 1.9E+02 0.0042 19.1 4.1 52 66-117 48-100 (102)
80 PRK01406 gltX glutamyl-tRNA sy 22.5 33 0.00071 29.2 0.3 28 2-29 295-322 (476)
81 PF15002 ERK-JNK_inhib: ERK an 22.4 1.1E+02 0.0024 23.1 3.1 73 34-106 52-138 (207)
82 TIGR03042 PS_II_psbQ_bact phot 21.9 3E+02 0.0065 19.5 8.7 47 66-112 95-141 (142)
83 COG2238 RPS19A Ribosomal prote 21.5 63 0.0014 22.9 1.5 13 37-49 50-62 (147)
84 COG0850 MinC Septum formation 20.7 53 0.0011 25.0 1.1 60 88-147 17-76 (219)
No 1
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=100.00 E-value=2.9e-44 Score=258.80 Aligned_cols=151 Identities=34% Similarity=0.587 Sum_probs=141.9
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI-QPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~-~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
+||++|++|+.+++++|+|||+.+++++|++++|+||+|+|++||++|++.. ....++|++.+.++.|++|+..+..+|
T Consensus 5 ~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~~~~ 84 (156)
T cd07956 5 VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLAKFP 84 (156)
T ss_pred hhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHHHhH
Confidence 4899999999999999999999999999999999999999999999998731 111346778889999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+++.+++++.+|+.+++|+.+|++.||+||++|+|++++.+++.+||+|++++++++++||++|||+||++|
T Consensus 85 ~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~~~m 156 (156)
T cd07956 85 EVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAPERM 156 (156)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999999999999999999999999999999999998889999999999999999999999999999999
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-44 Score=303.75 Aligned_cols=150 Identities=29% Similarity=0.498 Sum_probs=139.0
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCC--CCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP--DHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~--~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
+|||||++|+.+|.++|+|||+.+++|+|||++||||||||+|||+||++..+.. ...+ ..+.++.|++|++.|..|
T Consensus 425 i~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~-~~l~~~~E~~L~~~L~~f 503 (577)
T COG0018 425 IDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD-ALLTELEERELVKKLLEF 503 (577)
T ss_pred hhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc-hhccChHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999863211 1223 467888899999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHH-HHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH-VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~-~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
|+++++++++++||.+|.||++||+.||+||++|+|++++.+ ++.+||+|+.++++||++||.||||++|+||
T Consensus 504 p~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 504 PEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence 999999999999999999999999999999999999998776 8999999999999999999999999999999
No 3
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=9.5e-42 Score=287.97 Aligned_cols=149 Identities=28% Similarity=0.466 Sum_probs=134.9
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP-DHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~-~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
+||+||++|++++.++|+|||+++++|+|+|||||||||||+|||+||++..... ...+...+.++.|++|++.|..||
T Consensus 427 ~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp 506 (576)
T PLN02286 427 YGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFP 506 (576)
T ss_pred hhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999998742100 111222467899999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
++|..++++++||.+|+||++||+.||+||++|+|++++.+ .+||+|+.++++||++||.||||++|++|
T Consensus 507 ~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~--~aRL~L~~a~~~vL~~gL~LLGI~~~e~M 576 (576)
T PLN02286 507 EVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEE--TSRLLLCEATAIVMRKCFHLLGITPLYRL 576 (576)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccCCCCch--hHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 99999999999999999999999999999999999986554 79999999999999999999999999999
No 4
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-38 Score=268.59 Aligned_cols=147 Identities=22% Similarity=0.448 Sum_probs=135.6
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
+||+||++|+.++.++|+|||+++++|+|+|+|||||||||+|||+||++. .. ...++. +.+|.|++|+..+..||+
T Consensus 416 ~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~-~~-~~~~~~-l~~~~E~~Ll~~L~~~~~ 492 (562)
T PRK12451 416 VGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV-EF-ETCTFA-LKDDYSWSVVKLLNKFPQ 492 (562)
T ss_pred cceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCC-Cc-cccccC-CCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999863 11 123333 678999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
++.+++++++||.+|+|+++|+..||+||+.++|+++ ++++.+||+|+.++++||++||.||||+||+||
T Consensus 493 ~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~~-~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~erM 562 (562)
T PRK12451 493 VIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRILEE-SAEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562 (562)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 9999999999999999999999999999999999964 457899999999999999999999999999999
No 5
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=247.85 Aligned_cols=148 Identities=25% Similarity=0.405 Sum_probs=134.2
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++|+||++|+.++.++++|||+.+.+++++|++|+||+|+|++||++|++..+. ..+...+.++.|+.|+..|..||+
T Consensus 359 idAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~--~~~~~~l~~~~e~~Ll~~L~~~~~ 436 (507)
T PRK01611 359 IDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGI--DLLLALLTEEEEKELIKKLAEFPE 436 (507)
T ss_pred cceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCc--cccccccCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999764111 111123668899999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHH-HHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH-VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~-~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
++.+++++++||.+|+|+++|++.||+||++|+ ++++++ ++.+||+|+.++++||++||.||||+||+||
T Consensus 437 ~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~e~M 507 (507)
T PRK01611 437 VVESAAEELEPHRIANYLYELAGAFHSFYNRVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAPERM 507 (507)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999999999999999999999999999999 766655 8899999999999999999999999999999
No 6
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=8.7e-35 Score=245.68 Aligned_cols=150 Identities=26% Similarity=0.463 Sum_probs=135.8
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD-HCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~-~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
++|+||++|+.++.++++|||+.++++++++++||||+|+|+|||++|++..+... ..++. +.++.|+.|+..+..+|
T Consensus 415 ~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~-~~~~~e~~Ll~~l~~~~ 493 (566)
T TIGR00456 415 IGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFS-LLEEKEKELLKLLLQFP 493 (566)
T ss_pred ccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccC-CCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999986522211 12333 34788999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCC-HHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE-YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~-~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+.+.+++++++|+.+|+|+++|+..||+||++|+|++++ ++++.+||+|+.++++||++||.||||++||+|
T Consensus 494 ~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~e~M 566 (566)
T TIGR00456 494 DVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPPERM 566 (566)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999999999999999999999999999999999865 457999999999999999999999999999999
No 7
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=100.00 E-value=3.1e-35 Score=202.46 Aligned_cols=117 Identities=27% Similarity=0.513 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 35 LQYSHCRLVSLAQECNAIQPPDHCDPKL-LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 35 lqya~aR~~sIlrk~~~~~~~~~~d~~~-l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
|||||+|++||++|++..+.....+... +.+++|++|++.+..||+++.+++++.+|+.+|+|+++||+.||+||++|+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999998643222222222 588999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 114 VKGTEYHVS-QHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 114 V~~~~~~~~-~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
|++++++.+ .+||+|++++++++++||++|||+||++|
T Consensus 81 I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~~~M 119 (119)
T PF05746_consen 81 ILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPLEKM 119 (119)
T ss_dssp STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----S--
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 999998877 99999999999999999999999999999
No 8
>KOG1195|consensus
Probab=100.00 E-value=1.8e-34 Score=233.83 Aligned_cols=151 Identities=40% Similarity=0.678 Sum_probs=143.0
Q ss_pred CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCC--CCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI--QPPDHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~--~~~~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
++|+++++++.++.+.|.|+|+.+.+++|+||+||||+|+|++||+||.... +....+|++.+++|.-..|++.|..|
T Consensus 415 ~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~f 494 (567)
T KOG1195|consen 415 LSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQF 494 (567)
T ss_pred hHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhh
Confidence 5899999999999999999999999999999999999999999999998742 23356789999999977788999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
|++++++.++++|+.++.||+.||++++++|+..+|.+++.++.-+||+|++++++||.+||.+|||+|+++|
T Consensus 495 p~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv~~M 567 (567)
T KOG1195|consen 495 PEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARLLLFSAVRQVLNNGMRLLGITPVDRM 567 (567)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHHHHHHHHHHHHHhHHHHhCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
No 9
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=100.00 E-value=1.5e-32 Score=189.96 Aligned_cols=117 Identities=32% Similarity=0.541 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhhcCCCC--CC--CCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhh
Q psy6239 35 LQYSHCRLVSLAQECNAIQ--PP--DHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALK 110 (151)
Q Consensus 35 lqya~aR~~sIlrk~~~~~--~~--~~~d~~~l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~ 110 (151)
|||+|+|++||++|++..+ .+ .++|++.+.+++||+|+..+..+|+++.+++.+.+|+.+|+|+.+|++.||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 6999999999999986421 11 2457778889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-HHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 111 QLQVKGTE-YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 111 ~~~V~~~~-~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+|+|++++ .+++.+||+|+.++++++.+++.+|||+||++|
T Consensus 81 ~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~~~m 122 (122)
T smart00836 81 KCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred cCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 99999998 778999999999999999999999999999999
No 10
>KOG4426|consensus
Probab=99.97 E-value=1.5e-31 Score=214.34 Aligned_cols=150 Identities=23% Similarity=0.350 Sum_probs=136.5
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCC--CC---CCCCCCCCCCHHHHHHHHHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQ--PP---DHCDPKLLAEPVALQLILDIA 76 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~--~~---~~~d~~~l~~~~E~~L~~~l~ 76 (151)
|+|+|.+|+.+|.++|.|++|+|++-.|||++|+.|||+|||||.||.+.+. ++ .+...-.+.++.||+|-++|.
T Consensus 497 GciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lL 576 (656)
T KOG4426|consen 497 GCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLL 576 (656)
T ss_pred cchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999997631 11 122234578999999999999
Q ss_pred HhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHH-----HHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 77 RFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH-----VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 77 ~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~-----~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
+|++.++.+..++-||.+|.|+++||..|+.||++|.|++.+.+ +...|+.|+.++..|+..|+.+|||+|+.+|
T Consensus 577 kf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV~km 656 (656)
T KOG4426|consen 577 KFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPVYKM 656 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCCcccccC
Confidence 99999999999999999999999999999999999999975542 6789999999999999999999999999998
No 11
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=99.66 E-value=1.3e-15 Score=130.76 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=110.6
Q ss_pred hhcCCCCCceee--HhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q psy6239 9 LKIRRLKSYNFN--WDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQA 85 (151)
Q Consensus 9 L~~~~~~~~~fd--~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~a 85 (151)
|+....+.+++. ++.+.+|.+.... -+.-+|+|+.||++|.+. +....+|+.++.+++|++|+..+......+..+
T Consensus 542 l~~~~~~~~~~~~r~~aL~~~~~~~~~~~l~~~~kRv~NIl~k~~~-~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~ 620 (682)
T PRK01233 542 LALRPDDLADLDARVEALSAFRKLPEFKALAAANKRVSNILKKAEG-KVSGEVDPALFEEPAEKALYAALEELKPKVEPA 620 (682)
T ss_pred HccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhcccc-ccCCccChhHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 443444555555 4566666654332 399999999999999763 223468999999999999999999998888888
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6239 86 HESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCV 142 (151)
Q Consensus 86 ~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~l 142 (151)
....+|...+..|..|++.++.|||+|+||++|..+|+|||+|+..+.+.+....++
T Consensus 621 ~~~~~y~~~l~~l~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~~f~~iaDf 677 (682)
T PRK01233 621 LAAGDYQAALEALAALRPPVDAFFDNVMVMAEDEALRANRLALLASLRELFLRVADF 677 (682)
T ss_pred hhhccHHHHHHHHHhhhhHHHHHhCCCeeeCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 889999999999999999999999999999999999999999999999999876554
No 12
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=99.66 E-value=1.3e-15 Score=130.80 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=111.5
Q ss_pred HhhcCCCCCceee--HhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHH
Q psy6239 8 NLKIRRLKSYNFN--WDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQ 84 (151)
Q Consensus 8 ~L~~~~~~~~~fd--~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~ 84 (151)
.|+...++.+++. ++.+.+|.+.... -+.-+|+|+.||++|.+. .....+|.+++.+++|+.|+..+..+...+..
T Consensus 551 Vl~~~~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~-~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~ 629 (691)
T TIGR00211 551 VLARRETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNP-VLSSEIQANLFKEPKEKALFEAVLAIKMNAQE 629 (691)
T ss_pred HHccCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccc-cccCccChhHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444555666665 5666777654433 399999999999999763 22236899999999999999999998888887
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6239 85 AHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCV 142 (151)
Q Consensus 85 a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~l 142 (151)
.....+|...+..|..|++.++.|||+|+||++|.++|.|||+|+..++..+....++
T Consensus 630 ~~~~~~y~~~l~~l~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~lf~~iaDf 687 (691)
T TIGR00211 630 SFESGDYETALEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVADI 687 (691)
T ss_pred HhhhccHHHHHHHHHHhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHHhccH
Confidence 7888899999999999999999999999999999999999999999999999876553
No 13
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.6e-15 Score=125.86 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=117.8
Q ss_pred HhHhhcCCCCCceee--HhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 6 VYNLKIRRLKSYNFN--WDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 6 ~~~L~~~~~~~~~fd--~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
=.+|..++.++++++ .+.+..|...... -+.-+++|+.||++|.+. .....+|++++.+++|+.|...+..+...+
T Consensus 548 ~AVL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~-~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~ 626 (691)
T COG0751 548 DAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEK-KLSGTVDPSLFEEDAEKALFEALQALKPKV 626 (691)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhccc-ccCCccChHHhcCHHHHHHHHHHHHHHHHH
Confidence 346777777788887 5777777654443 388999999999999875 345678999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy6239 83 YQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMC 141 (151)
Q Consensus 83 ~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~ 141 (151)
..+....++...+..|..|+..++.||++|+||++|.++|+|||+|+..++..+...-+
T Consensus 627 ~~a~a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd 685 (691)
T COG0751 627 AEALAEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFLKVAD 685 (691)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999887644
No 14
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=99.59 E-value=1.4e-14 Score=127.61 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=106.5
Q ss_pred HhhcCCCCCceee--HhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHH
Q psy6239 8 NLKIRRLKSYNFN--WDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQ 84 (151)
Q Consensus 8 ~L~~~~~~~~~fd--~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~ 84 (151)
+|....++++++. ++.+.+|.+.... -+.-+++|+.||++|.+. ..+|.+++.+++|++|...+......+..
T Consensus 866 Vl~~~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~~----~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~ 941 (1000)
T PRK14908 866 VLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSF----SVTDASLLLEPAELNLKQALDAFREELTE 941 (1000)
T ss_pred HHccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcCC----CccChhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666 5666677654332 399999999999999763 25788999999999999999988777766
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6239 85 AHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCV 142 (151)
Q Consensus 85 a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~l 142 (151)
. ..++...+..|..|.+.++.|||+|+||++|.++|.|||+|+..++..+....++
T Consensus 942 ~--~~dy~~al~~La~L~~~Id~FFD~VmVm~eD~~iR~NRLaLL~~i~~lf~~vaDf 997 (1000)
T PRK14908 942 L--PIDLKDYVAAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDW 997 (1000)
T ss_pred h--hhhHHHHHHHHHhhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHhhcch
Confidence 5 5599999999999999999999999999999999999999999999998776543
No 15
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.30 E-value=4.7e-11 Score=102.81 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=109.3
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
++||++|+....++++|+++.+.+..+....+.+| ++|+++++++... . +...+ ++.|+.|+..+..+++.+
T Consensus 337 aLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~-~~rl~s~l~~~~~----~--~~~~~-~~~d~~Ll~~l~~~~~~v 408 (651)
T PTZ00399 337 QIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNF-FANVKIKLRESEL----T--SPQKW-TQHDFELNELFEETKSAV 408 (651)
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHhhccc----c--ccccC-CHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999887776655667777 8999999876432 1 11112 467888999999999999
Q ss_pred HHHH-HhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 83 YQAH-ESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 83 ~~a~-~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
..+. .+++++.++.++++|+..+|.|++. + ...|+.++.++...+..++.+|||.++++|
T Consensus 409 ~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~~------~---~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m 469 (651)
T PTZ00399 409 HAALLDNFDTPEALQALQKLISATNTYLNS------G---EQPSAPLLRSVAQYVTKILSIFGLVEGSDG 469 (651)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhc------c---ccchHHHHHHHHHHHHHHHhcccCCcchhh
Confidence 9998 6799999999999999999999962 1 346788999999999999999999887765
No 16
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=98.75 E-value=2.6e-07 Score=78.16 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=85.6
Q ss_pred cchhHhHhhcC-CCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLKIR-RLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~~~-~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++++.. ..++.+|+++.+.+....... .+.+++.|+.+++.+... +. ++.....++.++.|+..+..++
T Consensus 348 D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~-~~---~~~~~~~~~~d~~ll~~l~~~~ 423 (530)
T TIGR00398 348 DILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFN-GV---LPSEDITDEEDKKLLKLINEAL 423 (530)
T ss_pred hHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc---CCCCcccchhhHHHHHHHHHHH
Confidence 47999999865 688999999985443222233 599999999999887532 11 1111123467888999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
+.+.++.++++++.+++++.+++..+|.|++.++-
T Consensus 424 ~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kp 458 (530)
T TIGR00398 424 EQIDEAIESFEFRKALREIMKLADRGNKYIDENKP 458 (530)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999998854
No 17
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=98.56 E-value=1.6e-06 Score=72.88 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=85.0
Q ss_pred cchhHhHhhcCC-CCCceeeHhHHhc-ccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLKIRR-LKSYNFNWDECLH-MSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~~~~-~~~~~fd~~~~~~-~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
.|+||++++..+ .++++|+++.+.. ++++...++++.+.|+.+++++... +..+. ...+ .+.++.++..+..++
T Consensus 320 DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~-~~~~~--~~~~-~~~d~~l~~~l~~~~ 395 (511)
T PRK11893 320 DAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFD-GKVPE--PGAL-TEADEALLEAAAALL 395 (511)
T ss_pred HHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCC--Cccc-chhhHHHHHHHHHHH
Confidence 479999999855 7999999988753 3444556799999999999987632 21111 1112 345667888899999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
+.+.++.++++++.+++++.+++..+|.|++..+
T Consensus 396 ~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~ 429 (511)
T PRK11893 396 ERVRAAMDNLAFDKALEAILALVRAANKYIDEQA 429 (511)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999998764
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=98.33 E-value=8.2e-06 Score=71.09 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=79.3
Q ss_pred cchhHhHhhcCCC--CCceeeHhHHhcccCCCHH--HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy6239 2 SALIVYNLKIRRL--KSYNFNWDECLHMSGDGGV--KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 2 ~ai~~~~L~~~~~--~~~~fd~~~~~~~~~~~~~--~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
-|+||++|+..+. ++.+|+++.+....+...+ +-++.+ |+.+++++... + .+. ..+.++.|+..+..
T Consensus 350 DalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~-R~~~~~~k~~~-~---~~~----~~~~d~~ll~~l~~ 420 (673)
T PRK00133 350 DYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFAS-RTAGFINKRFD-G---KLP----DALADPELLEEFEA 420 (673)
T ss_pred hHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcC-C---CCC----CCcccHHHHHHHHH
Confidence 3799999987765 4899999886432222222 456665 99998876432 1 111 13457889999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
+++.+.+++++++++.+++++++++..+|.|++..+-
T Consensus 421 ~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kp 457 (673)
T PRK00133 421 AAEKIAEAYEAREFRKALREIMALADFANKYVDDNEP 457 (673)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998864
No 19
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=98.20 E-value=3.5e-05 Score=65.64 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=80.1
Q ss_pred cchhHhHhhcCC-CCCceeeHhHHhcccCCCHH--HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 2 SALIVYNLKIRR-LKSYNFNWDECLHMSGDGGV--KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 2 ~ai~~~~L~~~~-~~~~~fd~~~~~~~~~~~~~--~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
-|+||++++..+ .++.+|+++.+........+ +-+|+ .|+.+++++... +. .... ..++.++.|+..+..+
T Consensus 355 DalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~-~r~~~~~~~~~~-~~---~~~~-~~~~~d~~ll~~l~~~ 428 (556)
T PRK12268 355 DYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV-NRVLSFIEKYFG-GI---VPPG-ELGDEDRELIAEAEAL 428 (556)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH-HHHHHHHHHhcC-Cc---CCCC-cCCcccHHHHHHHHHH
Confidence 379999998764 48899999886433222222 45555 699998887542 11 1111 1245678899999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
.+.+.++.++++++.+++++++++..+|.|++..+.
T Consensus 429 ~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kp 464 (556)
T PRK12268 429 FKEVGELLEAGEFKKALEEIMELAREANKYLDEKAP 464 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999987754
No 20
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.45 E-value=0.0094 Score=39.41 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 35 LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 35 lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
.+.-+.|+++.+.+... +..+..+... .++.+..++..+..+.+.+.++.++++++..++.++++....|.|++..+.
T Consensus 10 ~~n~~~r~~~~~~~~~~-~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~~p 87 (117)
T cd07375 10 FLNRLYRLLSFFRKALG-GTQPKWDNEL-LEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKP 87 (117)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCcChhh-cCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHhhH
Confidence 66677788887666532 2111111111 245678899999999999999999999999999999999999999875433
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy6239 115 KGTEYHVSQHRLLLFNKARLVLNQGM 140 (151)
Q Consensus 115 ~~~~~~~~~~RL~L~~~~~~vl~~~l 140 (151)
..-..+....++.++..+..++..+|
T Consensus 88 w~~~~~~~~~~~~~~~~~l~~l~~lL 113 (117)
T cd07375 88 ALQTEELREAVLAVLRAALVVLTKLL 113 (117)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 32111222334444444444444443
No 21
>PLN02946 cysteine-tRNA ligase
Probab=97.12 E-value=0.0048 Score=52.82 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.9
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
.++||++|+....++++|+++.+..- . ... +++|+++|+++++++... ..... . .+ ..+...+..+.+
T Consensus 344 dalR~~lLs~hyr~~l~fs~e~L~~a-~-~~l~~l~~~~~~~~~~l~~~~~-~~~~~-~-----~~--~~~~~~~~~~~~ 412 (557)
T PLN02946 344 LALRLFLLGTHYRSPINYSDVQLESA-S-ERIFYIYQTLHDCEESLQQHDS-TFEKD-S-----VP--PDTLNCINKFHD 412 (557)
T ss_pred cceeeeeeccCCCCCcEecHHHHHHH-H-HHHHHHHHHHHHHHHHhhhhcc-ccccc-c-----cc--hhhHHHHHHHHH
Confidence 37999999999999999999885433 2 233 699999999999876421 00000 0 01 001112223333
Q ss_pred HHHHH-HHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy6239 81 VLYQA-HESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLK 146 (151)
Q Consensus 81 ~l~~a-~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~ 146 (151)
.+..+ -.+++-...+..|+++.+.+|++-+.- .+... ..|+..+..+...+...+.+|||.
T Consensus 413 ~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~vLGl~ 474 (557)
T PLN02946 413 EFVTSMSDDLHTPVALAALSEPLKTINDLLHTR--KGKKQ---EKRLESLAALEKKIRDVLSVLGLM 474 (557)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhhhc--ccccc---cchHHHHHHHHHHHHHHHHHcCCC
Confidence 33333 356788889999999999999877542 10001 112233444556677777889984
No 22
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.91 E-value=0.032 Score=50.95 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=78.9
Q ss_pred chhHhHhhcCC-CCCceeeHhHHhccc-CC-CHHHHHHHHHHHHHH--HhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRR-LKSYNFNWDECLHMS-GD-GGVKLQYSHCRLVSL--AQECNAIQPPDHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~~-~~~~~fd~~~~~~~~-~~-~~~~lqya~aR~~sI--lrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
|+||++++..+ .++++|+++.+.+.. +. +..+ -++.++... +...+. .........+ ++.++.++..+..
T Consensus 614 alR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~--N~~~f~~~y~~~~~~~~--~~~~~~~~~~-~~~D~wils~l~~ 688 (975)
T PRK06039 614 ALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLW--NVYSFFVLYANLDGFDY--PPAEDEVDSL-NELDRWILSRLNS 688 (975)
T ss_pred HHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHH--HHHHHHHHHhhhccCCc--cccccccccC-CHHHHHHHHHHHH
Confidence 78999999874 899999998843321 11 1111 111111100 011000 0000111112 4567888999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh-c--ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQ-L--QVKGTEYHVSQHRLLLFNKARLVLNQGMCVL 143 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~-~--~V~~~~~~~~~~RL~L~~~~~~vl~~~l~ll 143 (151)
+...+.++.++++++.+++.++++...+++||=+ + +....... ..|......+..+|...+.+|
T Consensus 689 li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~--~~~~~a~~~L~~~L~~l~~lL 755 (975)
T PRK06039 689 LVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDD--PDKLAAYATLYTVLETLSRLA 755 (975)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888833 2 23332211 123334444555666555554
No 23
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=96.89 E-value=0.029 Score=48.97 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=75.1
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++||++++. ...++.+|+++.+.+-.+..-.. +--...|+.+.+.+... +..+. ...+ .+.+..++..+....+
T Consensus 321 ~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~-~~~p~--~~~~-~~~D~~ll~~l~~~~~ 396 (648)
T PRK12267 321 ALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFD-GEIPA--PGNV-TEFDEELIALAEETLK 396 (648)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-CcCCC--CCCC-chhhHHHHHHHHHHHH
Confidence 689999975 45678999998865422211111 33344777777665432 11111 1111 2345678889999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
.+.++.++++++..++.+.+++...|.|++...-
T Consensus 397 ~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kp 430 (648)
T PRK12267 397 NYEELMEELQFSRALEEVWKLISRANKYIDETAP 430 (648)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999987753
No 24
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.80 E-value=0.068 Score=48.27 Aligned_cols=132 Identities=13% Similarity=0.067 Sum_probs=83.3
Q ss_pred cchhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHH-hhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLA-QECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIl-rk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
-|+||++++. .+.++++|+++.+....+ -.--.++.+|..+.- .+... .........++.++.++..+....
T Consensus 541 DalR~~ll~~~~~~~Di~fs~~~l~~~~~--~~nkl~N~~Rf~~~~~~~~~~----~~~~~~~~~~~~D~wil~~l~~~~ 614 (874)
T PRK05729 541 DALRFTLAALASPGRDIRFDEERVEGYRN--FANKLWNASRFVLMNLEGADV----GELPDPEELSLADRWILSRLNRTV 614 (874)
T ss_pred HHHHHHHHhCCCCCCCceeCHHHHHHHHH--HHHHHHHHHHHHHHhcccCCc----ccccccccCCHHHHHHHHHHHHHH
Confidence 3799999987 577899999988754431 112445667766532 11111 111111112456778889999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HHHHHHhhh-cc-cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLT-NSINKALKQ-LQ-VKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy~~-~~-V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
+.+.++.++++++.+++.+++++ ..|.+||=+ ++ .+- +.+ |-.....+..++..++.+|.
T Consensus 615 ~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~~~----~~~~~~~l~~~l~~~~~lL~ 677 (874)
T PRK05729 615 AEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-EAA----KRATRATLAYVLEQILRLLH 677 (874)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhH----HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998 466666633 22 121 111 33444455566666666664
No 25
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.75 E-value=0.029 Score=50.47 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=68.4
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHH-HHHHHH--HHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQY-SHCRLV--SLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqy-a~aR~~--sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
|+||++++..+.++++|+++.+....++-. -..+ +..++. +.+.+.+... .......+ ++.++.++..+..+.
T Consensus 633 alR~~ll~~~~~~D~~fs~~~l~~~~~~~~-n~l~N~~~~~~~~~~l~~~~~~~--~~~~~~~l-~~~d~~ll~~l~~~~ 708 (861)
T TIGR00392 633 ILRLYVASSDPWEDLRFSDEILKQVVEKYR-KIRWNTYRFLLTYANLDKFDPLF--NSVAVEKF-PEEDRWILSRLNSLV 708 (861)
T ss_pred HHHHHHHhCCCCCCceECHHHHHHHHHHHH-HHHHHHHHHHHHHhccccCCccc--cccccccC-CHHHHHHHHHHHHHH
Confidence 789999999888999999988654322100 0222 223332 4444332100 01111112 456788999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-HHHHh
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLTNS-INKAL 109 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La~~-f~~fy 109 (151)
+.+.++.++++++.+++.++++... +++||
T Consensus 709 ~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Y 739 (861)
T TIGR00392 709 EEVNEALEKYNFHKVLRALQDFIVEELSNWY 739 (861)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 76665
No 26
>PLN02610 probable methionyl-tRNA synthetase
Probab=96.60 E-value=0.064 Score=48.04 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=74.7
Q ss_pred chhHhHhhcC-CCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhh----cCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIR-RLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQE----CNAIQPPDHCDPKLLAEPVALQLILDIA 76 (151)
Q Consensus 3 ai~~~~L~~~-~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk----~~~~~~~~~~d~~~l~~~~E~~L~~~l~ 76 (151)
++||++++.. ..++.+|+|+.+...-+..-+- +---..|+.+.+.+ +-. +..+...... .++.+..|+..+.
T Consensus 371 ~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~-g~vp~~~~~~-~~~~d~~Ll~~~~ 448 (801)
T PLN02610 371 VWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYG-SVIPDAPGAE-SHPLTKKLAEKVG 448 (801)
T ss_pred HhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CcCCCccccc-cchhhHHHHHHHH
Confidence 6899999865 4478899998765443222121 33334677777763 222 2111111101 1223456888888
Q ss_pred HhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 77 RFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 77 ~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
...+.+.++.++++++..++-+++++...|.|++....
T Consensus 449 ~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kP 486 (801)
T PLN02610 449 KLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 486 (801)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999998754
No 27
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=96.44 E-value=0.076 Score=44.60 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=75.1
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
++||++|+..+.++++|+.+.+.. .+..+.|+.+..+.... . ...+ .+...+..+.+.+
T Consensus 288 ~lR~~ll~~~~~~~~~fs~~~l~~--------a~~~~~rl~~~~~~~~~----~--------~~d~-~~~~~l~~~~~~~ 346 (463)
T PRK00260 288 VLRFFLLSAHYRSPLNFSEEALEQ--------AKKALERLYNALAETAL----G--------EDDE-ALLAELEEFKERF 346 (463)
T ss_pred HhHHHHHhCCCCCCCccCHHHHHH--------HHHHHHHHHHHHHHhhh----c--------cchh-hHHHHHHHHHHHH
Confidence 799999999999999999886432 24456777777766431 0 0112 2344555666677
Q ss_pred HHHHH-hcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy6239 83 YQAHE-SYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGL 145 (151)
Q Consensus 83 ~~a~~-~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi 145 (151)
..+.. +++....+..++++.+.+|.+.+.- +. ..+..+...+...+.+||+
T Consensus 347 ~~al~ddln~~~Al~~l~~lv~~~n~~~~~~-----~~-------~~~~~~~~~~~~~~~ilG~ 398 (463)
T PRK00260 347 IEAMDDDFNTPEALAVLFELAREINRALETK-----DK-------EAAAALAALLRALADVLGL 398 (463)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhhcc-----cH-------HHHHHHHHHHHHHHHhcCC
Confidence 77774 8999999999999999999887552 11 1233344566667788888
No 28
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.16 Score=43.76 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=80.4
Q ss_pred chhHhHhhcCCC-CCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKIRRL-KSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~~~~-~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++||++++..+. ++-+|+++...+.-+..-+- +.--..|+.+...|.-. |..+... . ...+.+.+++..+....+
T Consensus 355 ~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~-g~vp~~~-~-~~~~~d~~~~~~~~~~~~ 431 (558)
T COG0143 355 ALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFD-GVVPAAG-A-PDLEEDEELLALAREALE 431 (558)
T ss_pred HhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcCCccc-c-ccchhhHHHHHHHHHHHH
Confidence 689999997654 79999998877654333222 44445799998877654 3222222 1 112567788888888899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQL 112 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~ 112 (151)
.+..+.+..+....+.-+.+|+..-|+|+++-
T Consensus 432 ~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 432 AVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999987
No 29
>PLN02224 methionine-tRNA ligase
Probab=96.11 E-value=0.2 Score=43.65 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=71.3
Q ss_pred chhHhHhhcCC-CCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKIRR-LKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~~~-~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
++||++++..+ .++.+|+++...+-....-+- +---..|+.+...+.-. +..+. + ... ++.+..|+..+....+
T Consensus 388 ~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~-~~~~~-~-~~~-~~~d~~l~~~l~~li~ 463 (616)
T PLN02224 388 AVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCE-STLVE-D-STV-AAEGVPLKDTVEKLVE 463 (616)
T ss_pred HHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCC-c-ccc-ccccHHHHHHHHHHHH
Confidence 68999999654 567899988753221111111 33334666666665432 11111 1 111 1223457778888889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSINKALKQLQ 113 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~ 113 (151)
.+..+.+..+++..++.++++....|.|++.+.
T Consensus 464 ~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~ 496 (616)
T PLN02224 464 KAQTNYENLSLSSACEAVLEIGNAGNTYMDQRA 496 (616)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999875
No 30
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=95.02 E-value=0.66 Score=31.16 Aligned_cols=104 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCC--C
Q psy6239 40 CRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKG--T 117 (151)
Q Consensus 40 aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~--~ 117 (151)
.|+.++..+... +..+. ... .++.+..++..+....+.+.++.++++++..++-+.++....|.|++..+-.. .
T Consensus 14 ~r~~~~~~~~~~-~~~~~--~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~~kpw~~~~ 89 (129)
T cd07957 14 NRTLNMASKYFG-GVVPE--FGG-LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDETAPWKLAK 89 (129)
T ss_pred HHHHHHHHHHcC-CcCCC--CCC-CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccCCCHHHHc
Confidence 566666655432 11111 111 23345668888888889999999999999999999999999999988665321 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCcC
Q psy6239 118 EYHVSQHRLLLFNKARLVLNQGMCVLGLKPL 148 (151)
Q Consensus 118 ~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~ 148 (151)
+.. ...+-..+..+..++.....+|.-=.|
T Consensus 90 ~~~-~~~~~~~l~~~~~~l~~~~~lL~P~~P 119 (129)
T cd07957 90 EED-PERLATVLYVLLELLRILAILLSPFMP 119 (129)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 100 112223444555566666666554333
No 31
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=94.53 E-value=1 Score=41.28 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=65.6
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCC--CCCCCC---CCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNA--IQPPDH---CDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~--~~~~~~---~d~~~l~~~~E~~L~~~l~~ 77 (151)
++||++++....++++|+.+.+.. ..-.+.++.|.+|-.-. .+..+. +....+ .+..+.++..+..
T Consensus 652 ~lRl~lls~~~~~D~~fs~~~l~~--------~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~-~~~D~wil~~l~~ 722 (961)
T PRK13804 652 ILRLWVASVDYSDDQRIGKEILKQ--------VSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADL-PELERYMLHRLNE 722 (961)
T ss_pred HHHHHHHhCCCCCCcccCHHHHHH--------HHHHHHHHHHHHHHHHhccccCCcccccCChhhc-CHHHHHHHHHHHH
Confidence 689999998888999999876532 12233345555543210 010011 111112 3345678888999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHh
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLT-NSINKAL 109 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy 109 (151)
+.+.+.++.++++.+.+++.++++. ..+++||
T Consensus 723 ~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Y 755 (961)
T PRK13804 723 LDGLVREAYDAYDFKRIYKALVNFVNVDLSAFY 755 (961)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6776665
No 32
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=94.22 E-value=1.4 Score=39.93 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=77.4
Q ss_pred chhHhHhhcCC-CCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhHH
Q psy6239 3 ALIVYNLKIRR-LKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP-KLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 3 ai~~~~L~~~~-~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~-~~l~~~~E~~L~~~l~~~~~ 80 (151)
|+||++++..+ .++++|+++.+.+-. +-.-=.++..|.....-+.. ..++. ..-..+.++.++..+.....
T Consensus 547 alR~~l~~~~~~~~d~~f~~~~~~~~~--~~~nkl~N~~rf~~~~~~~~-----~~~~~~~~~~~~~D~wil~~l~~~~~ 619 (861)
T TIGR00422 547 ALRFTLASLVTPGDDINFDWKRVESAR--NFLNKLWNASRFVLMNLSDD-----LELSGGEEKLSLADRWILSKLNRTIK 619 (861)
T ss_pred HHHHHHHhCCCCCCCceecHHHHHHHH--HHHHHHHHHHHHHHhccccc-----cccccccccCCHHHHHHHHHHHHHHH
Confidence 78999998776 899999998865321 11112333444333211110 00111 01123456678888999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHHHHh-hhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLT-NSINKAL-KQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La-~~f~~fy-~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
.+.++.++++.+..++.++++. ..+.++| +.++ ...++.+ .+-.....+..++..++.+|.
T Consensus 620 ~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~---~~~~~~~~l~~~l~~~~~lL~ 684 (861)
T TIGR00422 620 EVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEA---EKKAARDTLYYVLDKALRLLH 684 (861)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999996 4555554 4332 2233322 233344445555566665554
No 33
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.26 E-value=3.4 Score=37.12 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=77.3
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
-++||++++....++++|+.+.+.. ..... =.+...|-..-+.+ . +. ......+ .+.++.++..+.....
T Consensus 554 D~lR~~l~~~~~~~d~~fs~~~~~~---~~~~l~kl~N~~r~~~~~~~--~-~~--~~~~~~~-~~~D~~il~~l~~~i~ 624 (800)
T PRK13208 554 DAVRYWAASARLGSDTPFDEKQVKI---GRRLLTKLWNASRFVLHFSA--D-PE--PDKAEVL-EPLDRWILAKLAKVVE 624 (800)
T ss_pred cHHHHHHhcCCCCCCceecHHHHHH---HHHHHHHHHHHHHHHHhccc--c-cc--cCccccC-CHHHHHHHHHHHHHHH
Confidence 3789999988888999999988632 11111 12233332211111 0 00 0011112 3455668888999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-HHHH-hhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNS-INKA-LKQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~-f~~f-y~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
.+.++.++++.+.+++.++++... +.++ .+..+ ...++... .|-.....+..++...+.+|.
T Consensus 625 ~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~--~~~~~~~~l~~~l~~l~~LLa 690 (800)
T PRK13208 625 KATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEE--EQKSARYTLYTVLDTLLRLLA 690 (800)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcH--HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 5554 44432 22332211 133444455566666666654
No 34
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.45 E-value=4.8 Score=36.81 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=65.8
Q ss_pred chhHhHhh-cCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNLK-IRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L~-~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||++++ ....++.+|+.+.+... .-...|+.+..++... ... + .. ..+.++.++..+....+.
T Consensus 599 alRl~L~~~~~~~~D~~fs~~~v~~~--------~~~l~r~~~~~~~~~~-~~~---~-~~-~~~~D~wils~l~~~i~~ 664 (897)
T PRK12300 599 VVRLYLTSSAELLQDADWREKEVESV--------RRQLERFYELAKELIE-IGG---E-EE-LRFIDKWLLSRLNRIIKE 664 (897)
T ss_pred HHHHHHHhCCCCCCCCccCHHHHHHH--------HHHHHHHHHHHHHHhc-CCC---c-cc-cCHhHHHHHHHHHHHHHH
Confidence 68999998 45778889988765322 1123477777766532 111 1 11 134456688888888999
Q ss_pred HHHHHHhcCHHHHHHHHH-HHHHHHHHHhhhc
Q psy6239 82 LYQAHESYDSSIVVRYLF-NLTNSINKALKQL 112 (151)
Q Consensus 82 l~~a~~~~~p~~l~~~l~-~La~~f~~fy~~~ 112 (151)
+.++.++++++..++.++ .+...+|.|.+.+
T Consensus 665 v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~ 696 (897)
T PRK12300 665 TTEAMESFQTRDAVQEAFYELLNDLRWYLRRV 696 (897)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997774 7878888666544
No 35
>PLN02943 aminoacyl-tRNA ligase
Probab=92.21 E-value=5.3 Score=36.79 Aligned_cols=134 Identities=9% Similarity=-0.015 Sum_probs=77.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCC--------CCCCC----CCCCCHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPP--------DHCDP----KLLAEPVAL 69 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~--------~~~d~----~~l~~~~E~ 69 (151)
|+||++++....++++|+++.+.. +...+ =.+..+|-. ++........ ...+. ..+ ...++
T Consensus 605 alR~~l~~~~~~~d~~fs~~~l~~---~~~~~~kl~N~~rf~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~D~ 678 (958)
T PLN02943 605 ALRFTLALGTAGQDLNLSTERLTS---NKAFTNKLWNAGKFV--LQNLPSQSDTSAWEHILACKFDKEESLLSL-PLPEC 678 (958)
T ss_pred HHHHHHHhCCCCCCccccHHHHHH---HHHHHHHHHHHHHHH--HhccccccccccccccccccCCcccccccc-CHHHH
Confidence 789999988788899999987653 11111 123333322 1111100000 00111 112 34556
Q ss_pred HHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHhhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 70 QLILDIARFDEVLYQAHESYDSSIVVRYLFNLT--NSINKALKQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 70 ~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La--~~f~~fy~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
.++..+....+.+.+++++++.+..++.++++. ..-|.|.+.++ ...++.. ..|......+..+++..+.+|.
T Consensus 679 wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~ 755 (958)
T PLN02943 679 WVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLH 755 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHh
Confidence 688888888999999999999999999999994 45555555543 2233221 1133445555566677666664
No 36
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.11 E-value=3 Score=38.12 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=65.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCC--CCCC---CCCCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNA--IQPP---DHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~--~~~~---~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
++||++++....++.+|+.+.+.. ..-.+.++.|..|-.-. .+.. ..++...+ .+.++.++..+..
T Consensus 614 alR~~ll~~~~~~D~~~s~~~l~~--------~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l-~~~D~~il~~l~~ 684 (912)
T PRK05743 614 ILRLWVASTDYSGDVRISDEILKQ--------VAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEEL-LELDRWALHRLAE 684 (912)
T ss_pred HHHHHHHhcCCCCCeeecHHHHHH--------HHHHHHHHHHHHHHHHhCccCCCcccccCCchhC-CHHHHHHHHHHHH
Confidence 689999998888999999776532 12233455555443211 0100 01111112 3456788888999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHh
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLT-NSINKAL 109 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy 109 (151)
+.+.+.+++++++.+.+++.+.++. ..+++||
T Consensus 685 ~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 685 LQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 9999999999999999999999998 4676655
No 37
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.63 E-value=8.2 Score=34.88 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=65.1
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||++++. ...++++|+.+.+.. ..-...|+.+..+.... .....+... .+.++.++..+..+-..
T Consensus 592 ~lRl~l~~~~~~~~d~~~s~~~l~~--------~~~~l~kl~~~~~~~~~--~~~~~~~~~--~~~D~~il~~l~~~i~~ 659 (805)
T PRK00390 592 TARLFEMFAGPPEKDLEWSDSGVEG--------AYRFLQRVWRLVVDAKG--EAGALDVAA--LSEDKELRRKLHKTIKK 659 (805)
T ss_pred HHHHHHHhcCCccCCcccCHHHHHH--------HHHHHHHHHHHHHHhhh--cccccCccc--ChhhHHHHHHHHHHHHH
Confidence 689999874 677888888765432 11224455555554111 001122111 23557788888888899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q psy6239 82 LYQAHESYDSSIVVRYLFNLTNSINKAL 109 (151)
Q Consensus 82 l~~a~~~~~p~~l~~~l~~La~~f~~fy 109 (151)
+.++.++++.+.+++.++++...+++||
T Consensus 660 v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 660 VTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998
No 38
>PLN02843 isoleucyl-tRNA synthetase
Probab=91.54 E-value=9 Score=35.44 Aligned_cols=102 Identities=7% Similarity=-0.038 Sum_probs=66.6
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCC--CCCCC--CCCCCCCCCHHHHHHHHHHHHh
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNA--IQPPD--HCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~--~~~~~--~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
++||++++....++++|+.+.+.+ ..-.+.|+.|.+|-.-. .+..+ .++...+ .+.++.++..+...
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~--------~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~-~~~D~wiLskL~~l 712 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQ--------MSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDL-PSIDKYALFQLENV 712 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHH--------HHHHHHHHHHHHHHHHhCccCCCcccccCcccc-CHHHHHHHHHHHHH
Confidence 689999988888888888765421 22344456666553211 01100 1111112 23466788889999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHhhhcc
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNL--TNSINKALKQLQ 113 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~L--a~~f~~fy~~~~ 113 (151)
.+.+.+++++++++.+++.+++. ...-|.|++..+
T Consensus 713 i~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~K 749 (974)
T PLN02843 713 VNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAK 749 (974)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcc
Confidence 99999999999999999999876 446666666554
No 39
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=89.88 E-value=4 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh
Q psy6239 66 PVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQ 111 (151)
Q Consensus 66 ~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~ 111 (151)
+.++.++..+....+.+.++.++++++..++-++++....|+|++.
T Consensus 38 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~ 83 (117)
T cd07958 38 EEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKK 83 (117)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcc
Confidence 3566788888999999999999999999999999999999999864
No 40
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.37 E-value=5 Score=36.81 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=83.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-------CCCCHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPK-------LLAEPVALQLILDI 75 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~-------~l~~~~E~~L~~~l 75 (151)
++|..+++.....++.|+.+.+ +. +.-+|.|+.|.+|=.-.. ....|+. .+. +..+-++..+
T Consensus 624 iLRLwv~ssd~~~dl~~s~~il-~~-------~~~~~r~irNt~rF~l~n--l~~fdp~~~~~~~~~~~-~~Drwil~rl 692 (933)
T COG0060 624 ILRLWVASSDYWEDLRFSDEIL-KQ-------VREVYRKIRNTYRFLLGN--LDDFDPKKDAVLPEELR-ELDRWILSRL 692 (933)
T ss_pred heeeeeeecCchhccccCHHHH-HH-------HHHHHHHHHHHHHHHHHh--ccCCCccccccchhhcc-hhHHHHHHHH
Confidence 4667777777777777776552 11 455667777766643210 1112221 122 3345566678
Q ss_pred HHhHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHhhhc---ccCCC-CHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 76 ARFDEVLYQAHESYDSSIVVRYLFNLT-NSINKALKQL---QVKGT-EYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 76 ~~~~~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy~~~---~V~~~-~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
..+-..+.+++++++.|.+++.+.+.+ ...++||=.. +...+ +. ...|.+....+..+|.....+|.
T Consensus 693 ~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~--s~~rraa~~~Ly~il~~l~~~lA 764 (933)
T COG0060 693 NSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAAD--SPDRRAAQTTLYHILKALVRLLA 764 (933)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHc
Confidence 888889999999999999999999999 9999999332 34433 22 23566666777777777766654
No 41
>KOG0436|consensus
Probab=89.17 E-value=1.2 Score=37.36 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=70.0
Q ss_pred cchhHhHhhcC-CCCCceeeHhHHhcccCCCHHH-HHHHHHHHHH--HHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy6239 2 SALIVYNLKIR-RLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVS--LAQECNAIQPPDHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 2 ~ai~~~~L~~~-~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~s--Ilrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
-++||++|+.. ...+=||+-+++.......-+- +---..|+++ +..+..+.++. .| +.-...+--.|...+.+
T Consensus 365 D~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~--~~-s~~v~ae~~~lv~~v~k 441 (578)
T KOG0436|consen 365 DAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLV--VD-SPTVAAEGEPLVDTVEK 441 (578)
T ss_pred cceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccc--cC-CcchhhccchHHHHHHH
Confidence 37899999854 5678888877765443222211 3333355555 32222110110 01 10111222358888999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
.|++..+.+.......+|+.+......-|.|+++-.-
T Consensus 442 l~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aP 478 (578)
T KOG0436|consen 442 LPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAP 478 (578)
T ss_pred hHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCC
Confidence 9999999999999999999999999999999987643
No 42
>PLN02882 aminoacyl-tRNA ligase
Probab=88.80 E-value=10 Score=35.75 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=75.6
Q ss_pred chhHhHhhcCC--CCCceeeHhHHhcccCC--CHHH--HHHHHHHHHHHHhhcCCCCCCCC-C-CCCCCCCHHHHHHHHH
Q psy6239 3 ALIVYNLKIRR--LKSYNFNWDECLHMSGD--GGVK--LQYSHCRLVSLAQECNAIQPPDH-C-DPKLLAEPVALQLILD 74 (151)
Q Consensus 3 ai~~~~L~~~~--~~~~~fd~~~~~~~~~~--~~~~--lqya~aR~~sIlrk~~~~~~~~~-~-d~~~l~~~~E~~L~~~ 74 (151)
|+||++++... ..++.|+.+.+.+...+ +..+ .-+...++.++..+... +..+. . +...-..+..+.++..
T Consensus 636 aLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~D~wIls~ 714 (1159)
T PLN02882 636 ALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGA-PFVPLDLAKLQNSANVLDRWINSA 714 (1159)
T ss_pred HHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc-CCCccccccccccCCHHHHHHHHH
Confidence 68999997643 46788887765432110 0111 01111122232222211 11110 0 0000123456778888
Q ss_pred HHHhHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHhhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 75 IARFDEVLYQAHESYDSSIVVRYLFNLTNSI-NKALKQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 75 l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f-~~fy~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
+....+.+.++.++++.+..++.+.++...+ |.|.+..+ ...++.. ..|...+..+..++...+.+|.
T Consensus 715 l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~--~~~~~al~tL~~vL~~l~~LLa 785 (1159)
T PLN02882 715 TQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGE--EDCRTALSTLYNVLLTSCKVMA 785 (1159)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCCh--HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988654 55555442 3332211 1233445555556666555543
No 43
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.27 E-value=23 Score=32.38 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=86.6
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHH--HHHHHHHHHHHHh-hcCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVK--LQYSHCRLVSLAQ-ECNAIQPPDHCDPKLLAEPVALQLILDIARF 78 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~--lqya~aR~~sIlr-k~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~ 78 (151)
|+||.+-.. .+.+++.||++.+....+ | =.++.+|-..+-. +... .+.+. .-.++..+-++..+.+.
T Consensus 547 AlRf~la~~~~~G~Di~~~~~~~~~~rn----F~nKlWNa~Rfv~~~~~~~~~----~~~~~-~~~~~~drWIls~l~~~ 617 (877)
T COG0525 547 ALRFTLASLASPGRDINFDEKRVEGYRN----FLNKLWNATRFVLMNLDDLGP----DDLDL-LALSLADRWILSRLNET 617 (877)
T ss_pred HHHHHHHhccCCCcccCcCHHHHHHHHH----HHHHHHhHHHHHHhcccccCc----ccccc-cccchHHHHHHHHHHHH
Confidence 688888886 677899999888653211 3 4566677666532 2111 11111 11256778888889999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHhhh-c--ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLT-NSINKALKQ-L--QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGL 145 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La-~~f~~fy~~-~--~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi 145 (151)
-+.+.++..+++....++.+++.. ..|-.+|=+ + +..++ ...+......+..||.+.|.||.=
T Consensus 618 v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~----~~~~~~a~~tL~~vl~~~lrLLhP 684 (877)
T COG0525 618 VKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG----EEEKRAARATLYYVLDTLLRLLHP 684 (877)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999987 556666532 2 23333 123336667777888888888863
No 44
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=85.45 E-value=32 Score=32.21 Aligned_cols=132 Identities=8% Similarity=0.017 Sum_probs=76.1
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHH-HhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSL-AQECNAIQPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sI-lrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
++||++++. ...++.+|+++.+.... ... -.++..|.... +......+.. .....+ .+.++.++..+....
T Consensus 560 alR~~L~~~~~~g~D~~fs~~~l~~~~---~f~nkl~N~~R~~~~~~~~~~~~~~~--~~~~~~-~~~D~wils~l~~~i 633 (1052)
T PRK14900 560 ALRFTLAALTAQGRDIKLAKERIEGYR---AFANKLWNASRFALMNLSGYQERGED--PARLAR-TPADRWILARLQRAV 633 (1052)
T ss_pred HHHHHHHhcCCCCCCCcccHHHHHHHH---HHHHHHHHHHHHHHHhhhccCccccc--cccccc-CHHHHHHHHHHHHHH
Confidence 689999985 46789999988763321 111 23334454432 1111110100 011112 345667888889999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH--HHHHHHhhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 80 EVLYQAHESYDSSIVVRYLFNLT--NSINKALKQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMCVL 143 (151)
Q Consensus 80 ~~l~~a~~~~~p~~l~~~l~~La--~~f~~fy~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~ll 143 (151)
..+.+++++++.+..++.++++. ..-|.|++.++ ..+++... |-.....+..++..++.+|
T Consensus 634 ~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~---~~~~~~~L~~~L~~l~~LL 698 (1052)
T PRK14900 634 NETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEA---RRSVQAVLVHCLQTSYRLL 698 (1052)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 45566666553 22333221 2223333444555555544
No 45
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=84.31 E-value=20 Score=33.17 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHhhhcccC--C-CCHHHHHHHHHHHHHHHHHHHHHh
Q psy6239 66 PVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNL--TNSINKALKQLQVK--G-TEYHVSQHRLLLFNKARLVLNQGM 140 (151)
Q Consensus 66 ~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~L--a~~f~~fy~~~~V~--~-~~~~~~~~RL~L~~~~~~vl~~~l 140 (151)
..++.++..+......+.++.++++.+..++.++++ ....|.|.+.++-. . ++.+ .|-.....+..++...+
T Consensus 709 ~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~---~~~~~~~~L~~vL~~~l 785 (995)
T PTZ00419 709 WEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGE---RKQHAQDVLHTVLDIGL 785 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999995 45555566655432 1 2221 13334445556667777
Q ss_pred hhcC
Q psy6239 141 CVLG 144 (151)
Q Consensus 141 ~llg 144 (151)
.+|.
T Consensus 786 ~LL~ 789 (995)
T PTZ00419 786 RLLH 789 (995)
T ss_pred HHHh
Confidence 6664
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=84.07 E-value=13 Score=31.66 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=51.2
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCC---CCCCCCCCCHHHHHHHHHHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPD---HCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~---~~d~~~l~~~~E~~L~~~l~~ 77 (151)
.|+||++|+....++++|+++.+.+-.. .. .++.++.++......... +... .........+.+.. +..
T Consensus 301 ~alR~~lls~~yr~~l~Fs~e~l~~a~~--~~~rl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~ 373 (490)
T PRK14536 301 LDYRFFLLGGHYRSQLAFSWEALKTAKA--ARRSLVRRVARVVDAARATTG-SVRGTLAECAAERVAESRASE----SEL 373 (490)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhhcccc-cccccccccccccccchhhhh----HHH
Confidence 4799999999999999999988754432 11 244444444322111000 0000 00000000011111 122
Q ss_pred hHHHHHH-HHHhcCHHHHHHHHHHHHHHHHH
Q psy6239 78 FDEVLYQ-AHESYDSSIVVRYLFNLTNSINK 107 (151)
Q Consensus 78 ~~~~l~~-a~~~~~p~~l~~~l~~La~~f~~ 107 (151)
+...+.. ...+++-...+..|+++++.+|.
T Consensus 374 ~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 374 LLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 2223333 33467888888999999988774
No 47
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=82.34 E-value=14 Score=25.51 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHH-HHHH-HHHhhhc--ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 69 LQLILDIARFDEVLYQAHESYDSSIVVRYLFNL-TNSI-NKALKQL--QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 69 ~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~L-a~~f-~~fy~~~--~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
+.++..+...-+.+.++.++++++..++.++.+ ...| |.|++.+ +..+++..-. |- ....+..+++..+.+|.
T Consensus 2 ~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~--~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 2 RWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES--RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH--HH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH--HH-HHHHHHHHHHHHhhccC
Confidence 456778888888999999999999999999996 6788 5555554 2333322112 44 55777777777777765
Q ss_pred C
Q psy6239 145 L 145 (151)
Q Consensus 145 i 145 (151)
-
T Consensus 79 P 79 (153)
T PF08264_consen 79 P 79 (153)
T ss_dssp T
T ss_pred C
Confidence 3
No 48
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=82.28 E-value=34 Score=32.55 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh---cccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy6239 65 EPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQ---LQVKGTEYHVSQHRLLLFNKARLVLNQGMC 141 (151)
Q Consensus 65 ~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~---~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~ 141 (151)
.+..+.++..+......+.++.++++++..++.++++...+..||=+ -+...+... ..+...+..+..+|...+.
T Consensus 810 ~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~--~~~~~a~~tL~~vL~~~~~ 887 (1205)
T PTZ00427 810 NIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGE--ENCLQSLCTTYRTLHLFTV 887 (1205)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCc--HHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999888888833 222322111 1233455666677777776
Q ss_pred hcC
Q psy6239 142 VLG 144 (151)
Q Consensus 142 llg 144 (151)
+|.
T Consensus 888 LLa 890 (1205)
T PTZ00427 888 LMA 890 (1205)
T ss_pred Hcc
Confidence 664
No 49
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=82.16 E-value=12 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhhhc
Q psy6239 65 EPVALQLILDIARFDEVLYQAHESYDSSIVVRYL-FNLTNSINKALKQL 112 (151)
Q Consensus 65 ~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l-~~La~~f~~fy~~~ 112 (151)
++.++.++..+...-..+.++.++++++.+++.+ +.+....+.|.+.+
T Consensus 34 ~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~~ 82 (117)
T cd07959 34 TFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERG 82 (117)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466778888888889999999999999999996 99998888777643
No 50
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=79.67 E-value=17 Score=24.80 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHhhhccc
Q psy6239 65 EPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTN--SINKALKQLQV 114 (151)
Q Consensus 65 ~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~--~f~~fy~~~~V 114 (151)
++.+..++..+....+.+..+.++.+.+..++.+.++.. ..|.|++....
T Consensus 41 ~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~~~~p 92 (135)
T cd07962 41 SLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKP 92 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 345677888999999999999999999999999999987 78999887644
No 51
>KOG4077|consensus
Probab=79.29 E-value=6.7 Score=27.57 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q psy6239 79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDK 150 (151)
Q Consensus 79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~ 150 (151)
|++|+.+.+ .|+-+.+++.++ +|++.+++...+.+ + +...+-+-++-.++=|||++||.
T Consensus 84 pkvIEaaLR------A~RRvNDfa~aV-RilE~iK~K~g~~k--~----~Y~y~v~elkpvl~ELGI~t~Ee 142 (149)
T KOG4077|consen 84 PKVIEAALR------ACRRVNDFATAV-RILEAIKDKCGAQK--Q----VYPYYVKELKPVLNELGIPTPEE 142 (149)
T ss_pred hHHHHHHHH------HHHHhccHHHHH-HHHHHHHHhcccHH--H----HHHHHHHHHHHHHHHhCCCCHHH
Confidence 566665543 345555555553 46666666654432 1 55666667777788899999985
No 52
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=78.02 E-value=58 Score=30.12 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=59.6
Q ss_pred chhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6239 3 ALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEV 81 (151)
Q Consensus 3 ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~ 81 (151)
|+||++++. ...++.+|+.+.+.+-.. ++ .++.|..+.... ....... .. ....++.++..+....+.
T Consensus 642 alRl~Ll~~~~~~~D~~fs~~~~~~~~~----~l----~~l~n~~~~~~~-~~~~~~~-~~-~~~~D~wlls~l~~~i~~ 710 (938)
T TIGR00395 642 VARLYIADAAETVQDADWKESEVEGTIL----RL----ERLYEFAEEITK-ESNLETG-EE-TSFIDRWLESRMNAAIKE 710 (938)
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHH----HH----HHHHHHHHHHHh-hcccCCC-cc-CChHHHHHHHHHHHHHHH
Confidence 689999986 577899999877643321 11 233333222110 0000000 01 134567788888888899
Q ss_pred HHHHHHhcCHHHHH-HHHHHHHHHHHHH
Q psy6239 82 LYQAHESYDSSIVV-RYLFNLTNSINKA 108 (151)
Q Consensus 82 l~~a~~~~~p~~l~-~~l~~La~~f~~f 108 (151)
+..+.++++.+..+ .-++++....+.|
T Consensus 711 v~~a~e~~~~~~Al~~~l~~~~~~~n~Y 738 (938)
T TIGR00395 711 TYEAMENFQTRKAVKYALFDLQADVDWY 738 (938)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 6688888876544
No 53
>PLN02381 valyl-tRNA synthetase
Probab=75.73 E-value=72 Score=30.04 Aligned_cols=134 Identities=8% Similarity=0.062 Sum_probs=70.9
Q ss_pred chhHhHhhcC-CCCCceeeHhHHhcccCCCHHH--HHHHHHHHHHHHhhcCCCCCCC--CCCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIR-RLKSYNFNWDECLHMSGDGGVK--LQYSHCRLVSLAQECNAIQPPD--HCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~-~~~~~~fd~~~~~~~~~~~~~~--lqya~aR~~sIlrk~~~~~~~~--~~d~~~l~~~~E~~L~~~l~~ 77 (151)
|+||++++.. ...++.||++.+.... -| =.++..|- ++...+. +..+ ..+...+ .+..+-++..+..
T Consensus 714 alR~~l~~~~~~~~di~~~~~~v~~~r----~f~nKlwNa~rf--~~~~~~~-~~~~~~~~~~~~~-~~~DrWILskL~~ 785 (1066)
T PLN02381 714 ALRFALVSYTAQSDKINLDILRVVGYR----QWCNKLWNAVRF--AMSKLGD-DYTPPATLSVETM-PFSCKWILSVLNK 785 (1066)
T ss_pred HHHHHHHcCCccccccCccHHHHHHHH----HHHHHHHHHHHH--HHhhccc-ccCcccccCcccc-CHHHHHHHHHHHH
Confidence 6899999765 4567777776643110 01 12233332 1111111 0100 1111122 3455667888999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNL--TNSINKALKQLQV--KGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~L--a~~f~~fy~~~~V--~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
....+.+++++++.+..++.++++ ...-|.|++.++- ..++......|......+..++..++.+|.
T Consensus 786 ~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~ 856 (1066)
T PLN02381 786 AISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLH 856 (1066)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876 3444555555532 222110001122333444555566665553
No 54
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=69.69 E-value=68 Score=27.12 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGV-KLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDE 80 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~-~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~ 80 (151)
.|+||++|+....++++|+++.+.+-.. .. -+.-++.++...+.. . .. ..... ...+..+. ..
T Consensus 286 dalR~~ll~~~~~~~l~fs~~~l~~a~~--~~~rl~~~~~~~~~~~~~--~----~~-~~~~~-~~~~~~~~---~~--- 349 (465)
T TIGR00435 286 EILRYFLLSVHYRSPLDFSEELLEAAKN--ALERLYKALRVLDTTLAY--S----GN-QSLNK-FPDEKEFE---AR--- 349 (465)
T ss_pred HHHHHHHHhCCCCCCCccCHHHHHHHHH--HHHHHHHHHHHHHhhhcc--c----cc-ccccc-chhHHHHH---HH---
Confidence 3799999999999999999987644321 11 133333333222110 0 00 00000 01111111 22
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Q psy6239 81 VLYQAHESYDSSIVVRYLFNLTNSIN 106 (151)
Q Consensus 81 ~l~~a~~~~~p~~l~~~l~~La~~f~ 106 (151)
.....-.+++-...+..|+++++.+|
T Consensus 350 f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 350 FVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 22233356788888899999999888
No 55
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=62.69 E-value=6.9 Score=26.10 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 95 VRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 95 ~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
|+-+.+.+-++ +|++.++....+ +-.....+.+-++-.+.=|||++||.|
T Consensus 52 cRRvND~alAV-R~lE~vK~K~~~------~~~~y~~~lqeikp~l~ELGI~t~EeL 101 (103)
T cd00923 52 CRRVNDFALAV-RILEAIKDKCGA------HKEIYPYILQEIKPTLKELGISTPEEL 101 (103)
T ss_pred HHHhhhHHHHH-HHHHHHHHHccC------chhhHHHHHHHHhHHHHHHCCCCHHHh
Confidence 44444444443 445555443332 123455666677778888999999875
No 56
>KOG2007|consensus
Probab=61.05 E-value=83 Score=27.25 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=77.2
Q ss_pred chhHhHhhcCCCCCceeeH---hHHhcccCCCHHH--HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNW---DECLHMSGDGGVK--LQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~---~~~~~~~~~~~~~--lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
++|.+.|..+-.+.++|.- ..+.+++.....| ..-++.|. .. .+.. -.+.|.+|...+..
T Consensus 327 qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~-------~~-------~~~~-~~~~e~~l~~~~~~ 391 (586)
T KOG2007|consen 327 QLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRG-------AK-------PFEK-LSEKEAELLEDFGK 391 (586)
T ss_pred HHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cc-------hhhc-cChHHHHHHHhhhh
Confidence 3566777777777777773 3333443322221 22222221 10 0122 25688899988888
Q ss_pred hHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q psy6239 78 FDEVLYQAHE-SYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKP 147 (151)
Q Consensus 78 ~~~~l~~a~~-~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~ 147 (151)
....+..|.. +.+--.++..+.+|....|.+-.... + ..+-.++.++..-+.+.|.++|+..
T Consensus 392 t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~---~-----~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 392 TQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG---E-----RPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc---c-----ccchHHHHHHHHHHHHHHHHhCCCc
Confidence 7777766654 45666677899999998888775543 1 1233788888899999999999974
No 57
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=59.11 E-value=64 Score=23.11 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-hhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy6239 65 EPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKAL-KQLQ--VKGTEYHVSQHRLLLFNKARLVLNQGMC 141 (151)
Q Consensus 65 ~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy-~~~~--V~~~~~~~~~~RL~L~~~~~~vl~~~l~ 141 (151)
.+..+.++..+...-..+.++.++++.+.+++.++.+.....++| +.++ ..+++.+. .|..-...+..++...+.
T Consensus 46 ~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~~f~~~~~~~Y~e~~K~~~~~~~~~~--~~~~~~~~l~~~l~~ll~ 123 (183)
T cd07961 46 NVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRNRKRFWGEEGDD--DKLAAYATLYEVLLTLSR 123 (183)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHhhhchHHhcCCCCch--hHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999999999999999999998876766 3332 12221111 122334445556666666
Q ss_pred hcC
Q psy6239 142 VLG 144 (151)
Q Consensus 142 llg 144 (151)
+|.
T Consensus 124 ll~ 126 (183)
T cd07961 124 LMA 126 (183)
T ss_pred HHh
Confidence 554
No 58
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.46 E-value=4.4 Score=27.24 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239 128 LFNKARLVLNQGMCVLGLKPLDKM 151 (151)
Q Consensus 128 L~~~~~~vl~~~l~llgi~~~~~M 151 (151)
....+.+-++-.+.=|||++||.|
T Consensus 81 ~Y~~~lqElkPtl~ELGI~t~EeL 104 (108)
T PF02284_consen 81 IYPYILQELKPTLEELGIPTPEEL 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHT---TTTT
T ss_pred HHHHHHHHHhhHHHHhCCCCHHHh
Confidence 556666777778888999999976
No 59
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=49.26 E-value=11 Score=32.16 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.9
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcc
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHM 27 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~ 27 (151)
.++||++|+....++++|+++.+.+-
T Consensus 301 ~alR~~lls~~yr~~l~Fs~e~l~~a 326 (481)
T PRK14534 301 LDFRYFCLTAHYRTQLKFTFNNLKAC 326 (481)
T ss_pred hHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 47999999999999999999887644
No 60
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=48.73 E-value=2.2e+02 Score=26.16 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=59.0
Q ss_pred cchhHhHhhc-CCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239 2 SALIVYNLKI-RRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI-QPPDHCDPKLLAEPVALQLILDIARFD 79 (151)
Q Consensus 2 ~ai~~~~L~~-~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~-~~~~~~d~~~l~~~~E~~L~~~l~~~~ 79 (151)
-|+||++++. ....+++|+.+.+.. ..-...|+.|..+..... .....++...+ .+.++.++..+..+-
T Consensus 625 DalRl~~l~~~~~~~d~~~~~~~l~~--------~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l-~~~d~~il~~l~~~i 695 (842)
T TIGR00396 625 DALRLYIMFMGPIAASLEWNDSGLEG--------ARRFLDRVWNLFYNILGELDGKTYLTPTIL-EEAQKELRRDVHKFL 695 (842)
T ss_pred hHHHHHHHhcCCcCCCCccCHHHHHH--------HHHHHHHHHHHHHHHHhhhcccccCCcccC-CHHHHHHHHHHHHHH
Confidence 3789999954 566777777665421 122234555554432110 00000121222 346677888888888
Q ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHHHHHH
Q psy6239 80 EVLYQAHESYD-SSIVVRYLFNLTNSINKA 108 (151)
Q Consensus 80 ~~l~~a~~~~~-p~~l~~~l~~La~~f~~f 108 (151)
..+..+.+++. .+.+.+.++++...++++
T Consensus 696 ~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~ 725 (842)
T TIGR00396 696 KKVTEDLEKLESFNTAISAMMILLNALYKA 725 (842)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 88888888877 888888888888766653
No 61
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=47.76 E-value=37 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCH----HHHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 92 SIVVRYLFNLTNSINKALKQLQVKGTEY----HVSQHRLLLFNKARLVLNQGMCVL 143 (151)
Q Consensus 92 ~~l~~~l~~La~~f~~fy~~~~V~~~~~----~~~~~RL~L~~~~~~vl~~~l~ll 143 (151)
..+|.||.+=...|-+-|.+-++.++++ ++.+|..+++..+...+..-..+.
T Consensus 6 ~~l~~~L~~~~~~fl~~W~~~i~i~~~D~~k~~i~~NG~~~~~lvie~l~~~~~~~ 61 (133)
T PF09385_consen 6 QKLVNFLEEHKENFLSNWKKKILISEDDPFKEEIHQNGEAMFELVIEYLREEISLE 61 (133)
T ss_dssp HHHHHHHHHCHHHHHHHHHCCS---TT-TTHHHHHHHHHHHHHHHHHHHTTSS-GG
T ss_pred HHHHHHHHHhHHHHHHHHHhceeeCCCCchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 4578999998888888888777776654 489999999999988776655544
No 62
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=47.25 E-value=58 Score=19.15 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=27.9
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy6239 88 SYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLK 146 (151)
Q Consensus 88 ~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~ 146 (151)
+.+-...+..++++.+.+|+ ... ..+. .-+..+...+.....+|||-
T Consensus 9 DfNT~~Ala~lf~l~~~~N~--~~~---~~~~-------~~~~~~~~~l~~~~~vLGl~ 55 (63)
T PF09190_consen 9 DFNTPEALAALFELVKEINR--ALE---SNDK-------EDLEALAAALRKLLDVLGLL 55 (63)
T ss_dssp TS-HHHHHHHHHHHHHHHHH--HHH---CC-H-------HHHHHHHHHHHHHHHCCT-S
T ss_pred hcCcHHHHHHHHHHHHHHHH--hcc---cCCH-------HHHHHHHHHHHHHHhcCcCC
Confidence 45666777899999999999 111 1111 11233456677778888883
No 63
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=46.73 E-value=2.2e+02 Score=25.65 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=48.7
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
++||++|+....++++|+.+.+.+- +-+..|+.+.++.... .... +-..+..+++.+
T Consensus 530 alRl~lLsshYRspL~fS~e~Le~A--------k~~l~Rl~~~l~~~~~------~~~~---------~~~~l~~~~~~f 586 (699)
T PRK14535 530 VVRFFILRAHYRSPLNYSDAHLDDA--------KGALTRLYTTLKNTPA------AEFM---------LSENVNDYTRRF 586 (699)
T ss_pred HHHHHHHcCCCCCCCCcCHHHHHHH--------HHHHHHHHHHHHhhhh------ccch---------hhhhHHHHHHHH
Confidence 6899999988889999998765332 1223344444433211 0000 001122333333
Q ss_pred HHH-HHhcCHHHHHHHHHHHHHHHHHH
Q psy6239 83 YQA-HESYDSSIVVRYLFNLTNSINKA 108 (151)
Q Consensus 83 ~~a-~~~~~p~~l~~~l~~La~~f~~f 108 (151)
..+ ..+++-...+..|+++++.+|+.
T Consensus 587 ~~AL~DDlntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 587 YAAMNDDFGTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 333 34678888889999999988875
No 64
>COG2445 Uncharacterized conserved protein [Function unknown]
Probab=46.40 E-value=1e+02 Score=21.67 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6239 63 LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQV 114 (151)
Q Consensus 63 l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V 114 (151)
..+++|.+.++.+..|.+++-.-+...++..+.+.+.+.-..+-.|...++.
T Consensus 79 vi~~e~~e~L~~~~gfRN~lVH~Y~~vD~~~v~~~l~~~~~~~~~f~e~i~~ 130 (138)
T COG2445 79 VIPEEEAEELKKMVGFRNILVHRYWAVDPEKVYRSLKELLEDYENFLEEIRK 130 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999877654
No 65
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=42.46 E-value=1.2e+02 Score=21.52 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHH-HH-HHHhhhccc--CC--CCHHHHHHHHHHHHHHHHHHHH
Q psy6239 65 EPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTN-SI-NKALKQLQV--KG--TEYHVSQHRLLLFNKARLVLNQ 138 (151)
Q Consensus 65 ~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~-~f-~~fy~~~~V--~~--~~~~~~~~RL~L~~~~~~vl~~ 138 (151)
.+.++.++..+..+...+.++.++++.+..++-++++.. .+ |.|++..+- .. .+.+. |......+..++..
T Consensus 43 ~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~---~~~~~~~l~~~l~~ 119 (180)
T cd07960 43 LELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLE---RRSAQTVLYHILDA 119 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCHH---HHHHHHHHHHHHHH
Confidence 345566888999999999999999999999999999986 35 667665532 11 11121 22333445556666
Q ss_pred HhhhcCC
Q psy6239 139 GMCVLGL 145 (151)
Q Consensus 139 ~l~llgi 145 (151)
.+.+|.-
T Consensus 120 l~~lL~P 126 (180)
T cd07960 120 LLKLLAP 126 (180)
T ss_pred HHHHHcc
Confidence 6666653
No 66
>KOG0432|consensus
Probab=41.74 E-value=3e+02 Score=25.72 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=64.1
Q ss_pred chhHhHhhcC-CCCCceeeHhHHhcccC-CCHHHHHHHHHHHHHHHhhcCCCCC-C---CCCCCCCCCCHHHHHHHHHHH
Q psy6239 3 ALIVYNLKIR-RLKSYNFNWDECLHMSG-DGGVKLQYSHCRLVSLAQECNAIQP-P---DHCDPKLLAEPVALQLILDIA 76 (151)
Q Consensus 3 ai~~~~L~~~-~~~~~~fd~~~~~~~~~-~~~~~lqya~aR~~sIlrk~~~~~~-~---~~~d~~~l~~~~E~~L~~~l~ 76 (151)
|+||.+++.. ..+++.+|+..+..... .|.. +...|-.. ...+. +. + .+...+... -++|- +..|.
T Consensus 652 ALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKl---WNa~rF~l--~~lg~-~~~p~~~~~~~~~~~~-~d~WI-lsrL~ 723 (995)
T KOG0432|consen 652 ALRFALCSYTTQGRDINLDVLRVEGYRHFCNKL---WNATRFAL--QRLGE-NFVPSPTEDLSGNESL-VDEWI-LSRLA 723 (995)
T ss_pred HHHHHHHHccccCccccccHHHHhhHHHHHHHH---HHHHHHHH--Hhccc-CCCCCcccccCCCcch-hHHHH-HHHHH
Confidence 7899999966 55789999876542211 1111 11122111 11111 11 1 122222221 34444 44566
Q ss_pred HhHHHHHHHHHhcCHHHHHH-----HHHHHHHHHHHHhhhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6239 77 RFDEVLYQAHESYDSSIVVR-----YLFNLTNSINKALKQL-QVKGTEYHVSQHRLLLFNKARLVLNQGMCVLG 144 (151)
Q Consensus 77 ~~~~~l~~a~~~~~p~~l~~-----~l~~La~~f~~fy~~~-~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llg 144 (151)
.--+.+..++..++.+.... ++++||. .|-+.+ +++.++.. ..+-.-.+.+..++.+||.+|.
T Consensus 724 ~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCD---VYlE~~Kp~l~~~~~--~~~~~a~~vL~~~ld~gLrll~ 792 (995)
T KOG0432|consen 724 EAVEEVNESLEARNFHLATSALYAFWLYDLCD---VYLEATKPLLWGDSE--ALAYEARRVLYRCLDNGLRLLH 792 (995)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHhhHHhcCCcH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 66667777888888777653 2344443 454544 34434331 1122223445567778888775
No 67
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=39.00 E-value=1.1e+02 Score=25.26 Aligned_cols=77 Identities=10% Similarity=-0.033 Sum_probs=48.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHH
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVL 82 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~~~~d~~~l~~~~E~~L~~~l~~~~~~l 82 (151)
++||++|+....++++|+.+.+.+- +-...|+.+.++.... + .+..+.+.+
T Consensus 284 ~lR~~lls~~yr~~l~fs~e~l~~a--------~~~l~r~~~~~~~~~~--------------~-------~~~~~~~~f 334 (384)
T PRK12418 284 AIRLALLAGHYRADREWTDAVLAEA--------EARLARWRAAAALPAG--------------P-------DAADVVARV 334 (384)
T ss_pred heeEEEeccCCCCCcccCHHHHHHH--------HHHHHHHHHHHhcccc--------------c-------hHHHHHHHH
Confidence 6899999999999999998876432 2244555555543210 0 011122233
Q ss_pred HH-HHHhcCHHHHHHHHHHHHHHHHHH
Q psy6239 83 YQ-AHESYDSSIVVRYLFNLTNSINKA 108 (151)
Q Consensus 83 ~~-a~~~~~p~~l~~~l~~La~~f~~f 108 (151)
.. ...+++-...+..++++.+.+|.+
T Consensus 335 ~~al~dDlnt~~a~~~l~~~~~~~n~~ 361 (384)
T PRK12418 335 RAALADDLDTPGALAAVDGWATDALEG 361 (384)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 33 334678888889999999887765
No 68
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=38.93 E-value=1.3e+02 Score=20.64 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=53.3
Q ss_pred HHHHHHHHHH--------HHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhc-----c-cCC--CCHHHHHHHHHHH
Q psy6239 66 PVALQLILDI--------ARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQL-----Q-VKG--TEYHVSQHRLLLF 129 (151)
Q Consensus 66 ~~E~~L~~~l--------~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~-----~-V~~--~~~~~~~~RL~L~ 129 (151)
+.-|.||... ....+.+.+...++.|..+..|=..+......-|... . |.+ +++.-.-.|-+|+
T Consensus 4 ~~FW~lI~~~~~~~~~d~~~~~~~L~~~L~~l~~~ei~~F~~~~~~~~~~~~~~~lw~Aa~ii~gg~SdD~F~yFR~wLI 83 (128)
T PF14024_consen 4 DEFWELIERAREASGGDPDEVAEPLVELLAKLPPEEIVAFDKILDQLLDEAYTWDLWAAAYIINGGCSDDGFLYFRCWLI 83 (128)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHcCCCchhhHHHHHHHHH
Confidence 3445565544 2445666777788899999888877777777665432 2 334 4555688999999
Q ss_pred HHHHHHHHHHhh
Q psy6239 130 NKARLVLNQGMC 141 (151)
Q Consensus 130 ~~~~~vl~~~l~ 141 (151)
..=+.+++.++.
T Consensus 84 s~Gre~y~~~l~ 95 (128)
T PF14024_consen 84 SQGREVYEKALA 95 (128)
T ss_pred HccHHHHHHHHh
Confidence 999999988875
No 69
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=38.92 E-value=50 Score=16.86 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCHHHHHHHH
Q psy6239 78 FDEVLYQAHESYDSSIVVRYL 98 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l 98 (151)
.|.+++...+..+|+.+|..+
T Consensus 12 ~~~ii~~l~~~~~p~~iC~~i 32 (35)
T PF03489_consen 12 GPQIIQLLEKQLDPQQICTKI 32 (35)
T ss_dssp HHHHHHHHHTTSTHHHHHHHT
T ss_pred HHHHHHHHHhcCChHHHHHHc
Confidence 377888888888999998754
No 70
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=33.23 E-value=17 Score=30.79 Aligned_cols=28 Identities=11% Similarity=0.368 Sum_probs=23.5
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccC
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSG 29 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~ 29 (151)
++++|++|+..+.+++.||++++..+++
T Consensus 286 ~~i~~f~l~~~~~~~~~fd~~kL~~~N~ 313 (470)
T TIGR00464 286 ELIEIFSLNRVSKSPAKFDWKKLQWLNA 313 (470)
T ss_pred HHHHhcCcccCCCCCCeecHHHHHHHHH
Confidence 4689999999999999999999665543
No 71
>KOG1532|consensus
Probab=32.81 E-value=2.5e+02 Score=22.69 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=52.1
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccCCCHHH-HHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCHHHHHHHHHHHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSGDGGVK-LQYSHCRLVSLAQECNAIQPP---DHCDPKLLAEPVALQLILDIAR 77 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~-lqya~aR~~sIlrk~~~~~~~---~~~d~~~l~~~~E~~L~~~l~~ 77 (151)
|+|+-.-|+......+..-.|...+.+..|=.. .+|| ||||=|... +.. .+.|. .. .|. +...+..
T Consensus 136 GsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA----cSilyktkl-p~ivvfNK~Dv---~d-~~f-a~eWm~D 205 (366)
T KOG1532|consen 136 GSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA----CSILYKTKL-PFIVVFNKTDV---SD-SEF-ALEWMTD 205 (366)
T ss_pred ccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH----HHHHHhccC-CeEEEEecccc---cc-cHH-HHHHHHH
Confidence 455555555544443333334332222211111 6775 789988765 211 12222 11 111 1122334
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6239 78 FDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKG 116 (151)
Q Consensus 78 ~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~ 116 (151)
|+ ..+.|..+.+-+.+-..+..++-.+..||.+.++.+
T Consensus 206 fE-~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~ 243 (366)
T KOG1532|consen 206 FE-AFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVG 243 (366)
T ss_pred HH-HHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEE
Confidence 43 234444544555566777788888999999887553
No 72
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.25 E-value=3.2e+02 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=19.8
Q ss_pred chhHhHhhcCCCCCceeeHhHHh
Q psy6239 3 ALIVYNLKIRRLKSYNFNWDECL 25 (151)
Q Consensus 3 ai~~~~L~~~~~~~~~fd~~~~~ 25 (151)
.+||++|+..-.++++|..+.+.
T Consensus 290 ~lR~~lls~HYR~pl~fsee~L~ 312 (464)
T COG0215 290 VLRLFLLSSHYRSPLDFSEELLE 312 (464)
T ss_pred HHHHHHHHHHhCCccccCHHHHH
Confidence 68999999999999999977653
No 73
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=27.80 E-value=3.4e+02 Score=22.24 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHhc--------------CHHHHHHHHHHHHHHHHHHhhhcccCCC-C---HHHHHHH
Q psy6239 64 AEPVALQLILDIARFDEVLYQAHESY--------------DSSIVVRYLFNLTNSINKALKQLQVKGT-E---YHVSQHR 125 (151)
Q Consensus 64 ~~~~E~~L~~~l~~~~~~l~~a~~~~--------------~p~~l~~~l~~La~~f~~fy~~~~V~~~-~---~~~~~~R 125 (151)
.+++++++-+.|.+=.+-+.+.+... +-|.++..+..|+.. .|=+++++..+ | +++..+|
T Consensus 162 pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~~r~~~NIH~VLerV~~lv~~--e~~~~i~l~rdYDPSLP~v~~d~ 239 (363)
T COG3852 162 PDEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRALVEA--EFADNVRLIRDYDPSLPEVLGDR 239 (363)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHHhc--ccCCceEEeecCCCCCccccCCH
Confidence 45557777776666666666665544 677788888888776 67777776632 2 3577788
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcC
Q psy6239 126 LLLFNKARLVLNQGMCVLGLKPL 148 (151)
Q Consensus 126 L~L~~~~~~vl~~~l~llgi~~~ 148 (151)
=.|++++.++.+|+..-+|-.+.
T Consensus 240 DqliQv~LNlVrNAaqA~~~~~~ 262 (363)
T COG3852 240 DQLIQVFLNLVRNAAQALGGRAD 262 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999885443
No 74
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.80 E-value=1.6e+02 Score=21.00 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHH--------------HHHHHhhhcCCCcCC
Q psy6239 90 DSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARL--------------VLNQGMCVLGLKPLD 149 (151)
Q Consensus 90 ~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~--------------vl~~~l~llgi~~~~ 149 (151)
+-..+..|+.+-...-..||+...++--.- -...|+.|++.... ++-...+||||++-+
T Consensus 67 ~l~ali~~~e~~~~Ea~d~y~fts~l~r~L-d~e~R~eli~~mweIa~ADg~l~e~Ed~vi~RvAeLLgV~~~d 139 (148)
T COG4103 67 ELDALIEAGEEAGYEAIDLYSFTSVLKRHL-DEEQRLELIGLMWEIAYADGELDESEDHVIWRVAELLGVSPED 139 (148)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHhCCCHHH
Confidence 445567888888887788887776553110 03467777776543 567788999998754
No 75
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.95 E-value=1.7e+02 Score=20.99 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=30.2
Q ss_pred HHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q psy6239 74 DIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKAL 109 (151)
Q Consensus 74 ~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy 109 (151)
.+...|..+.+++...+|..+++.-.+....++++-
T Consensus 85 flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 85 FLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhh
Confidence 578889999999999999999887777777777663
No 76
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=24.48 E-value=45 Score=28.71 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=20.3
Q ss_pred cchhHhHhhcCCCCCceeeHhHH
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDEC 24 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~ 24 (151)
.++||++++.++.++++||++.+
T Consensus 295 dalR~~~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 295 EITRFLFARTKPEFHISFDLDVI 317 (515)
T ss_pred HHHHHHHhccCCCCCCcCCHHHH
Confidence 37899999999999999998844
No 77
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=23.83 E-value=1.1e+02 Score=19.04 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy6239 92 SIVVRYLFNLTNSINKALKQL 112 (151)
Q Consensus 92 ~~l~~~l~~La~~f~~fy~~~ 112 (151)
+..|+||.++|..-|.||...
T Consensus 65 ~~~aK~lw~~cv~~H~Ff~~~ 85 (90)
T PF09380_consen 65 PKAAKYLWKLCVEQHTFFRLR 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 457899999999999999654
No 78
>KOG4779|consensus
Probab=23.36 E-value=1.1e+02 Score=19.05 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.4
Q ss_pred hhcccCCCCHH-HHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy6239 110 KQLQVKGTEYH-VSQHRLLLFNKARLVLNQGMCVLGLK 146 (151)
Q Consensus 110 ~~~~V~~~~~~-~~~~RL~L~~~~~~vl~~~l~llgi~ 146 (151)
++....+++.+ ++..-+.|+.+++.++. ..+.+|.
T Consensus 36 d~~~gFG~~q~tiKS~~~~LIravrTvmr--vPLI~iN 71 (82)
T KOG4779|consen 36 DQGIGFGEDQPTIKSQLMNLIRAVRTVMR--VPLIIIN 71 (82)
T ss_pred ccCcccCCCCccHHHHHHHHHHHHHHHHh--cchhhhh
Confidence 34567777655 56666789999998887 5555553
No 79
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=23.26 E-value=1.9e+02 Score=19.12 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy6239 66 PVALQLILDIAR-FDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGT 117 (151)
Q Consensus 66 ~~E~~L~~~l~~-~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~ 117 (151)
..|.+-.+.+.. ||+.+...+-..=-+.-..-+-+|+..+..++.+.-..|+
T Consensus 48 ~SE~~a~~~l~~~fP~~l~~piL~~v~~s~~~rld~Lv~~v~~~~k~~ff~GE 100 (102)
T PF10537_consen 48 ESEKEARKKLEERFPEELREPILRLVQFSTRSRLDDLVDDVYDFFKDRFFVGE 100 (102)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCcCCC
Confidence 346666677777 9998877654332222223466677777777766655554
No 80
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=22.48 E-value=33 Score=29.17 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=24.0
Q ss_pred cchhHhHhhcCCCCCceeeHhHHhcccC
Q psy6239 2 SALIVYNLKIRRLKSYNFNWDECLHMSG 29 (151)
Q Consensus 2 ~ai~~~~L~~~~~~~~~fd~~~~~~~~~ 29 (151)
++|++++|+..+.++..||++++..+++
T Consensus 295 ~~i~~f~l~~~~~s~~~fd~~kL~~~N~ 322 (476)
T PRK01406 295 ELIELFDLERVSKSPARFDIKKLDWLNG 322 (476)
T ss_pred HHHHhcChhhCCCCCccccHHHHHHHHH
Confidence 4688999999999999999999887753
No 81
>PF15002 ERK-JNK_inhib: ERK and JNK pathways, inhibitor
Probab=22.43 E-value=1.1e+02 Score=23.11 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhcCCC----CCCCC--C--CCCC---CCCHHHHH-HH-HHHHHhHHHHHHHH-HhcCHHHHHHHHH
Q psy6239 34 KLQYSHCRLVSLAQECNAI----QPPDH--C--DPKL---LAEPVALQ-LI-LDIARFDEVLYQAH-ESYDSSIVVRYLF 99 (151)
Q Consensus 34 ~lqya~aR~~sIlrk~~~~----~~~~~--~--d~~~---l~~~~E~~-L~-~~l~~~~~~l~~a~-~~~~p~~l~~~l~ 99 (151)
+|+....=+.++|+.+... +..++ + |... +..--|.- ++ ..+.+||+++...+ +..++..++.+.+
T Consensus 52 ~i~~ll~~i~~vL~~Sr~~L~~a~~~p~~~fP~d~~~kdAls~vlENtAffgDl~LrfPdi~h~~~~~~~~w~~ll~Wa~ 131 (207)
T PF15002_consen 52 LIEILLEKIFKVLEESRAVLESADYIPDSPFPKDDKLKDALSSVLENTAFFGDLVLRFPDIVHHILDRNSDWNDLLRWAL 131 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcchHHHHHHHHH
Confidence 4788888888887765321 11111 1 1100 11111222 33 35788999999999 5678999999999
Q ss_pred HHHHHHH
Q psy6239 100 NLTNSIN 106 (151)
Q Consensus 100 ~La~~f~ 106 (151)
+.|....
T Consensus 132 ~f~~~s~ 138 (207)
T PF15002_consen 132 NFCNQSG 138 (207)
T ss_pred HHHHhcC
Confidence 9998854
No 82
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.88 E-value=3e+02 Score=19.50 Aligned_cols=47 Identities=19% Similarity=0.088 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhc
Q psy6239 66 PVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQL 112 (151)
Q Consensus 66 ~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~ 112 (151)
++-++|.+.+..-=..++.|++..++...-++=.+....|+.|.+-+
T Consensus 95 k~a~~L~~~Lf~~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~~~ 141 (142)
T TIGR03042 95 KEALALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADFDAYLDLL 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhC
Confidence 44566777777777788999999999999999999999999998654
No 83
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=63 Score=22.94 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhc
Q psy6239 37 YSHCRLVSLAQEC 49 (151)
Q Consensus 37 ya~aR~~sIlrk~ 49 (151)
.-|.|++||+||-
T Consensus 50 WwY~RaASilRki 62 (147)
T COG2238 50 WWYVRAASILRKI 62 (147)
T ss_pred hHHHHHHHHHHHH
Confidence 5689999999996
No 84
>COG0850 MinC Septum formation inhibitor [Cell division and chromosome partitioning]
Probab=20.72 E-value=53 Score=24.97 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=42.2
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q psy6239 88 SYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKP 147 (151)
Q Consensus 88 ~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~ 147 (151)
..+...+++-|.+.......||.+.++.-+-.++...|..+-..++.+-+.++.++||+.
T Consensus 17 ~~~~~~~~~~L~~~~~~~~~f~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 76 (219)
T COG0850 17 NQDLDEILQALSDKIAQAPGFFKKGPVILDVSLLGNTRLDLKALVKALREAGLRILGISG 76 (219)
T ss_pred cCCHHHHHHHHHHHHHhhHhhhcCCcEEEEeeccccccccHHHHHHHHHhcCceEEEEec
Confidence 456777888899999999999988765533222222277777777777777777887764
Done!